********************************************************************************
STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
********************************************************************************
MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

********************************************************************************


********************************************************************************
REFERENCE
********************************************************************************
If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
********************************************************************************


ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.312 C 0.188 G 0.188 T 0.312 

MOTIF 1-ARATGAGT STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 40 P= 3.5e-001
 0.821032 0.080325 0.096857 0.001786
 0.557666 0.040699 0.296144 0.105492
 0.974718 0.001072 0.022424 0.001786
 0.041412 0.001072 0.001072 0.956443
 0.001786 0.001072 0.978952 0.018190
 0.948863 0.001072 0.048278 0.001786
 0.001786 0.192342 0.804087 0.001786
 0.041412 0.001072 0.001072 0.956443

MOTIF 2-AMTCAGAA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 5.0e-001
 0.980741 0.005255 0.005255 0.008750
 0.397671 0.588324 0.005255 0.008750
 0.008750 0.005255 0.005255 0.980741
 0.202898 0.783097 0.005255 0.008750
 0.980741 0.005255 0.005255 0.008750
 0.008750 0.005255 0.977245 0.008750
 0.980741 0.005255 0.005255 0.008750
 0.980741 0.005255 0.005255 0.008750

MOTIF 3-CAGGAAGA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 1.0e+000
 0.106251 0.886415 0.002752 0.004582
 0.989915 0.002752 0.002752 0.004582
 0.004582 0.002752 0.988084 0.004582
 0.004582 0.104420 0.886415 0.004582
 0.888246 0.104420 0.002752 0.004582
 0.888246 0.002752 0.002752 0.106251
 0.175583 0.002752 0.817083 0.004582
 0.683926 0.002752 0.002752 0.310571

MOTIF 4-CATTTGCT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 7 P= 1.0e+000
 0.005960 0.852250 0.135829 0.005960
 0.932134 0.003579 0.003579 0.060707
 0.005960 0.003579 0.003579 0.986881
 0.005960 0.135829 0.003579 0.854631
 0.005960 0.003579 0.135829 0.854631
 0.005960 0.003579 0.984500 0.005960
 0.005960 0.984500 0.003579 0.005960
 0.270885 0.135829 0.003579 0.589706

MOTIF 5-AGAATGAA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 1.0e+000
 0.881782 0.002911 0.110460 0.004847
 0.004847 0.110460 0.648208 0.236485
 0.881782 0.002911 0.002911 0.112397
 0.989331 0.002911 0.002911 0.004847
 0.112397 0.002911 0.002911 0.881782
 0.004847 0.002911 0.987395 0.004847
 0.989331 0.002911 0.002911 0.004847
 0.774232 0.110460 0.110460 0.004847

********************************************************************************
Stopped because maximum number of motifs (5) reached.
********************************************************************************
COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/JUND.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_JUND/ --w 8 --nmotifs 5 --verbosity 1
********************************************************************************
CPU:		c22n04.farnam.hpc.yale.internal
********************************************************************************
FINALTIME:	1.18 seconds
********************************************************************************