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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.303 C 0.197 G 0.197 T 0.303 

MOTIF 1-RTGACTCA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 40 P= 3.3e-001
 0.500050 0.001410 0.290082 0.208458
 0.002172 0.001410 0.001410 0.995008
 0.022731 0.051072 0.841254 0.084943
 0.945345 0.001410 0.051072 0.002172
 0.002172 0.795597 0.001410 0.200821
 0.002172 0.051072 0.001410 0.945345
 0.151159 0.795597 0.001410 0.051834
 0.995008 0.001410 0.001410 0.002172

MOTIF 2-AACAAGAA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 8.8e-001
 0.989010 0.003104 0.003104 0.004782
 0.879691 0.112423 0.003104 0.004782
 0.114102 0.768693 0.112423 0.004782
 0.770371 0.112423 0.003104 0.114102
 0.770371 0.003104 0.112423 0.114102
 0.004782 0.003104 0.987332 0.004782
 0.989010 0.003104 0.003104 0.004782
 0.989010 0.003104 0.003104 0.004782

MOTIF 3-GAAGTGAC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 20 P= 1.0e+000
 0.065937 0.001794 0.929506 0.002763
 0.930476 0.001794 0.001794 0.065937
 0.867302 0.001794 0.128141 0.002763
 0.235365 0.064967 0.570558 0.129110
 0.002763 0.001794 0.001794 0.993649
 0.002763 0.001794 0.866333 0.129110
 0.930476 0.001794 0.001794 0.065937
 0.065937 0.739783 0.191517 0.002763

MOTIF 4-AAAAGCTC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 7 P= 1.0e+000
 0.936655 0.017891 0.017891 0.027564
 0.936655 0.017891 0.017891 0.027564
 0.936655 0.017891 0.017891 0.027564
 0.936655 0.017891 0.017891 0.027564
 0.027564 0.017891 0.926982 0.027564
 0.027564 0.926982 0.017891 0.027564
 0.027564 0.017891 0.017891 0.936655
 0.027564 0.926982 0.017891 0.027564

MOTIF 5-GCCRAGGG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 6 P= 1.0e+000
 0.130923 0.055488 0.808103 0.005487
 0.005487 0.985465 0.003561 0.005487
 0.256359 0.734593 0.003561 0.005487
 0.559157 0.128997 0.306359 0.005487
 0.611083 0.003561 0.254433 0.130923
 0.130923 0.003561 0.860029 0.005487
 0.057413 0.003561 0.808103 0.130923
 0.005487 0.003561 0.985465 0.005487

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/JUNB.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_JUNB/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n05.farnam.hpc.yale.internal
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FINALTIME:	0.61 seconds
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