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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.275 C 0.225 G 0.225 T 0.275 

MOTIF 1-TGACTCAT STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 48 P= 8.5e-002
 0.001974 0.001619 0.022242 0.974165
 0.051791 0.101414 0.745027 0.101769
 0.994787 0.001619 0.001619 0.001974
 0.001974 0.820222 0.076035 0.101769
 0.051791 0.051436 0.022242 0.874531
 0.001974 0.944615 0.051436 0.001974
 0.944970 0.001619 0.051436 0.001974
 0.252673 0.085409 0.026528 0.635391

MOTIF 2-AGTGAGAG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 20 P= 2.4e-001
 0.993687 0.001961 0.001961 0.002391
 0.148230 0.183158 0.666221 0.002391
 0.183588 0.207940 0.062295 0.546176
 0.002391 0.001961 0.993257 0.002391
 0.993687 0.001961 0.001961 0.002391
 0.002391 0.001961 0.932922 0.062725
 0.933352 0.062295 0.001961 0.002391
 0.304257 0.001961 0.691391 0.002391

MOTIF 3-AACTGAAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 1.0e+000
 0.990394 0.002984 0.002984 0.003638
 0.806788 0.094787 0.002984 0.095441
 0.003638 0.989740 0.002984 0.003638
 0.095441 0.094787 0.002984 0.806788
 0.003638 0.002984 0.989740 0.003638
 0.898591 0.002984 0.094787 0.003638
 0.990394 0.002984 0.002984 0.003638
 0.990394 0.002984 0.002984 0.003638

MOTIF 4-ACTGGAGG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 1.0e+000
 0.934064 0.020482 0.020482 0.024973
 0.024973 0.929573 0.020482 0.024973
 0.024973 0.020482 0.020482 0.934064
 0.024973 0.020482 0.929573 0.024973
 0.024973 0.020482 0.929573 0.024973
 0.934064 0.020482 0.020482 0.024973
 0.024973 0.020482 0.929573 0.024973
 0.024973 0.020482 0.929573 0.024973

MOTIF 5-CAAARCCA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 1.0e+000
 0.004284 0.987917 0.003514 0.004284
 0.988688 0.003514 0.003514 0.004284
 0.988688 0.003514 0.003514 0.004284
 0.943934 0.003514 0.003514 0.049038
 0.329660 0.111624 0.554432 0.004284
 0.112394 0.879807 0.003514 0.004284
 0.112394 0.879807 0.003514 0.004284
 0.806853 0.185349 0.003514 0.004284

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/IRF4.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_IRF4/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n05.farnam.hpc.yale.internal
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FINALTIME:	0.66 seconds
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