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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.21 C 0.29 G 0.29 T 0.21 

MOTIF 1-CCGCCTCC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 22 P= 3.0e-001
 0.001818 0.813742 0.062549 0.121891
 0.026671 0.908962 0.002513 0.061855
 0.001818 0.122779 0.873585 0.001818
 0.061855 0.873778 0.002513 0.061855
 0.206877 0.608682 0.062549 0.121891
 0.001818 0.094994 0.062549 0.840639
 0.001818 0.993851 0.002513 0.001818
 0.061855 0.693088 0.062549 0.182508

MOTIF 2-CAACCCGC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 5.0e-001
 0.192294 0.706161 0.098677 0.002868
 0.799778 0.098677 0.003964 0.097581
 0.799778 0.003964 0.003964 0.192294
 0.097581 0.895587 0.003964 0.002868
 0.002868 0.990300 0.003964 0.002868
 0.042076 0.856379 0.003964 0.097581
 0.002868 0.003964 0.895587 0.097581
 0.097581 0.706161 0.098677 0.097581

MOTIF 3-ATTGGCTR STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 37 P= 7.6e-001
 0.961836 0.001434 0.001434 0.035296
 0.001037 0.001434 0.001434 0.996095
 0.035296 0.001434 0.001434 0.961836
 0.001037 0.001434 0.996491 0.001037
 0.001037 0.001434 0.996491 0.001037
 0.191122 0.597236 0.118724 0.092918
 0.001037 0.157260 0.070062 0.771641
 0.544295 0.084540 0.301610 0.069555

MOTIF 4-CAGARGCC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 8.8e-001
 0.107143 0.696070 0.063815 0.132972
 0.845354 0.001835 0.089504 0.063308
 0.088997 0.001835 0.907841 0.001327
 0.995003 0.001835 0.001835 0.001327
 0.494112 0.001835 0.309242 0.194812
 0.001327 0.045669 0.933530 0.019473
 0.001327 0.820172 0.001835 0.176666
 0.045162 0.820172 0.133338 0.001327

MOTIF 5-AATGACAG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 6 P= 1.0e+000
 0.928173 0.026373 0.026373 0.019082
 0.928173 0.026373 0.026373 0.019082
 0.019082 0.026373 0.026373 0.928173
 0.019082 0.026373 0.935464 0.019082
 0.928173 0.026373 0.026373 0.019082
 0.019082 0.935464 0.026373 0.019082
 0.928173 0.026373 0.026373 0.019082
 0.019082 0.026373 0.935464 0.019082

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/IRF3.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_IRF3/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n04.farnam.hpc.yale.internal
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FINALTIME:	0.71 seconds
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