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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.262 C 0.238 G 0.238 T 0.262 

MOTIF 1-AGGTTTGG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 21 P= 7.6e-001
 0.823760 0.101843 0.022444 0.051952
 0.051952 0.051782 0.794252 0.102014
 0.202137 0.051782 0.694129 0.051952
 0.152075 0.101843 0.051782 0.694299
 0.001891 0.051782 0.001720 0.944607
 0.072676 0.051782 0.001720 0.873822
 0.022615 0.072506 0.852927 0.051952
 0.001891 0.151905 0.744190 0.102014

MOTIF 2-ACTTCCYC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 8.8e-001
 0.744479 0.249594 0.002824 0.003103
 0.003103 0.908801 0.084992 0.003103
 0.003103 0.002824 0.002824 0.991249
 0.085272 0.002824 0.002824 0.909080
 0.003103 0.908801 0.002824 0.085272
 0.003103 0.990969 0.002824 0.003103
 0.003103 0.415260 0.084992 0.496644
 0.003103 0.990969 0.002824 0.003103

MOTIF 3-AAACAGAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 1.0e+000
 0.990531 0.003056 0.003056 0.003358
 0.990531 0.003056 0.003056 0.003358
 0.662862 0.003056 0.330724 0.003358
 0.003358 0.901312 0.091971 0.003358
 0.990531 0.003056 0.003056 0.003358
 0.270391 0.003056 0.723195 0.003358
 0.812699 0.003056 0.091971 0.092274
 0.864807 0.039864 0.091971 0.003358

MOTIF 4-TGACTMAY STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 1.0e+000
 0.003193 0.002905 0.002905 0.990997
 0.003193 0.002905 0.906174 0.087728
 0.737392 0.002905 0.171975 0.087728
 0.003193 0.990709 0.002905 0.003193
 0.003193 0.002905 0.002905 0.990997
 0.510674 0.483228 0.002905 0.003193
 0.990997 0.002905 0.002905 0.003193
 0.087728 0.341045 0.087440 0.483788

MOTIF 5-AGGGAAGG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 6 P= 1.0e+000
 0.932891 0.021655 0.021655 0.023800
 0.023800 0.021655 0.930745 0.023800
 0.023800 0.021655 0.930745 0.023800
 0.023800 0.021655 0.930745 0.023800
 0.932891 0.021655 0.021655 0.023800
 0.932891 0.021655 0.021655 0.023800
 0.023800 0.021655 0.930745 0.023800
 0.023800 0.021655 0.930745 0.023800

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/IKZF2.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_IKZF2/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n09.farnam.hpc.yale.internal
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FINALTIME:	0.68 seconds
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