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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.265 C 0.235 G 0.235 T 0.265 

MOTIF 1-CCCTCTTC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 17 P= 5.0e-001
 0.002552 0.992631 0.002266 0.002552
 0.069342 0.859050 0.002266 0.069342
 0.002552 0.898191 0.096706 0.002552
 0.202923 0.002266 0.069057 0.725754
 0.269713 0.697820 0.029915 0.002552
 0.069342 0.069057 0.002266 0.859335
 0.136132 0.069057 0.135847 0.658964
 0.096991 0.764610 0.002266 0.136132

MOTIF 2-AGGAARAG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 23 P= 5.0e-001
 0.857333 0.138583 0.001921 0.002163
 0.002163 0.001921 0.993753 0.002163
 0.172184 0.001921 0.823732 0.002163
 0.993995 0.001921 0.001921 0.002163
 0.898775 0.001921 0.001921 0.097383
 0.285410 0.195378 0.517050 0.002163
 0.654135 0.001921 0.115147 0.228797
 0.002163 0.081970 0.913705 0.002163

MOTIF 3-ACAAAATT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 8 P= 5.0e-001
 0.933164 0.021382 0.021382 0.024073
 0.024073 0.930473 0.021382 0.024073
 0.933164 0.021382 0.021382 0.024073
 0.933164 0.021382 0.021382 0.024073
 0.933164 0.021382 0.021382 0.024073
 0.933164 0.021382 0.021382 0.024073
 0.024073 0.021382 0.021382 0.933164
 0.024073 0.021382 0.021382 0.933164

MOTIF 4-AACCACAG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 1.0e+000
 0.987620 0.003960 0.003960 0.004459
 0.870906 0.120675 0.003960 0.004459
 0.004459 0.870407 0.003960 0.121173
 0.121173 0.870407 0.003960 0.004459
 0.987620 0.003960 0.003960 0.004459
 0.004459 0.987122 0.003960 0.004459
 0.987620 0.003960 0.003960 0.004459
 0.052775 0.120675 0.705377 0.121173

MOTIF 5-AGYAGGCT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 1.0e+000
 0.988405 0.003709 0.003709 0.004176
 0.004176 0.003709 0.987938 0.004176
 0.113496 0.550659 0.003709 0.332135
 0.988405 0.003709 0.003709 0.004176
 0.113496 0.003709 0.769299 0.113496
 0.004176 0.003709 0.987938 0.004176
 0.004176 0.987938 0.003709 0.004176
 0.004176 0.222349 0.113029 0.660446

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/IKZF1.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_IKZF1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n04.farnam.hpc.yale.internal
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FINALTIME:	0.67 seconds
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