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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.268 C 0.232 G 0.232 T 0.268 

MOTIF 1-TTCCAGAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 68 P= 6.3e-001
 0.001509 0.001307 0.001307 0.995877
 0.001509 0.001307 0.061369 0.935815
 0.001509 0.995676 0.001307 0.001509
 0.001509 0.642660 0.165766 0.190065
 0.956846 0.001307 0.001307 0.040540
 0.001509 0.040339 0.956644 0.001509
 0.661400 0.236829 0.084105 0.017666
 0.878657 0.001307 0.001307 0.118729

MOTIF 2-CAAGHAAG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 7 P= 1.0e+000
 0.005114 0.853037 0.004430 0.137420
 0.931256 0.004430 0.004430 0.059884
 0.853720 0.004430 0.136736 0.005114
 0.005114 0.004430 0.853037 0.137420
 0.269726 0.456119 0.004430 0.269726
 0.853720 0.136736 0.004430 0.005114
 0.853720 0.004430 0.004430 0.137420
 0.005114 0.004430 0.985343 0.005114

MOTIF 3-GCTAATTC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 7 P= 1.0e+000
 0.006290 0.005450 0.981969 0.006290
 0.169044 0.819216 0.005450 0.006290
 0.169044 0.168203 0.005450 0.657303
 0.820057 0.168203 0.005450 0.006290
 0.982810 0.005450 0.005450 0.006290
 0.006290 0.168203 0.005450 0.820057
 0.169044 0.005450 0.005450 0.820057
 0.006290 0.981969 0.005450 0.006290

MOTIF 4-CTAGAACC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 1.0e+000
 0.003178 0.908655 0.084988 0.003178
 0.003178 0.002754 0.002754 0.991314
 0.744347 0.002754 0.167487 0.085413
 0.085413 0.002754 0.908655 0.003178
 0.991314 0.002754 0.002754 0.003178
 0.909080 0.002754 0.084988 0.003178
 0.085413 0.661688 0.167487 0.085413
 0.003178 0.990890 0.002754 0.003178

MOTIF 5-ATCTCAGA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 7 P= 1.0e+000
 0.657303 0.168203 0.005450 0.169044
 0.006290 0.005450 0.005450 0.982810
 0.006290 0.819216 0.168203 0.006290
 0.006290 0.005450 0.005450 0.982810
 0.006290 0.981969 0.005450 0.006290
 0.982810 0.005450 0.005450 0.006290
 0.006290 0.005450 0.819216 0.169044
 0.657303 0.168203 0.168203 0.006290

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/HSF1.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_HSF1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n09.farnam.hpc.yale.internal
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FINALTIME:	0.63 seconds
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