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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.209 C 0.291 G 0.291 T 0.209 

MOTIF 1-ACAMYCAR STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 5.0e-001
 0.991337 0.003184 0.003184 0.002294
 0.078243 0.916279 0.003184 0.002294
 0.991337 0.003184 0.003184 0.002294
 0.306331 0.612242 0.003184 0.078243
 0.002294 0.536294 0.003184 0.458228
 0.002294 0.992227 0.003184 0.002294
 0.991337 0.003184 0.003184 0.002294
 0.306087 0.155325 0.384397 0.154191

MOTIF 2-GCGGRGCT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 5.0e-001
 0.002854 0.003961 0.990330 0.002854
 0.002854 0.990330 0.003961 0.002854
 0.002854 0.003961 0.895849 0.097336
 0.002854 0.003961 0.990330 0.002854
 0.514983 0.003961 0.383720 0.097336
 0.002854 0.003961 0.990330 0.002854
 0.002854 0.951218 0.003961 0.041967
 0.002854 0.003961 0.193229 0.799956

MOTIF 3-CACACTCT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 5.0e-001
 0.019036 0.935509 0.026418 0.019036
 0.928127 0.026418 0.026418 0.019036
 0.019036 0.935509 0.026418 0.019036
 0.928127 0.026418 0.026418 0.019036
 0.019036 0.935509 0.026418 0.019036
 0.019036 0.026418 0.026418 0.928127
 0.019036 0.935509 0.026418 0.019036
 0.019036 0.026418 0.026418 0.928127

MOTIF 4-AGGGCAGG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 8.8e-001
 0.890213 0.102678 0.004132 0.002977
 0.101524 0.004132 0.891368 0.002977
 0.002977 0.004132 0.989914 0.002977
 0.002977 0.102678 0.694275 0.200070
 0.002977 0.792821 0.004132 0.200070
 0.988760 0.004132 0.004132 0.002977
 0.101524 0.004132 0.891368 0.002977
 0.002977 0.004132 0.891368 0.101524

MOTIF 5-AGTGGGCG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 1.0e+000
 0.799893 0.098624 0.098624 0.002860
 0.002860 0.003968 0.895657 0.097515
 0.097515 0.098624 0.193583 0.610279
 0.002860 0.098624 0.895657 0.002860
 0.097515 0.003968 0.895657 0.002860
 0.002860 0.003968 0.990313 0.002860
 0.192474 0.666859 0.098624 0.042044
 0.002860 0.003968 0.990313 0.002860

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/HDGF.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_HDGF/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n10.farnam.hpc.yale.internal
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FINALTIME:	0.64 seconds
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