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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.191 C 0.309 G 0.309 T 0.191 

MOTIF 1-CYGGAGAC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 7.6e-001
 0.004487 0.983773 0.007253 0.004487
 0.004487 0.495513 0.170006 0.329994
 0.004487 0.007253 0.983773 0.004487
 0.167240 0.170006 0.658266 0.004487
 0.981007 0.007253 0.007253 0.004487
 0.004487 0.007253 0.821019 0.167240
 0.981007 0.007253 0.007253 0.004487
 0.004487 0.983773 0.007253 0.004487

MOTIF 2-CCGCGCCT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 1.0e+000
 0.002033 0.918900 0.003287 0.075780
 0.002033 0.992647 0.003287 0.002033
 0.075780 0.077034 0.623793 0.223393
 0.032562 0.888371 0.077034 0.002033
 0.149528 0.077034 0.771406 0.002033
 0.002033 0.845153 0.077034 0.075780
 0.002033 0.918900 0.077034 0.002033
 0.149646 0.077034 0.003287 0.770034

MOTIF 3-AAAATYAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 1.0e+000
 0.767238 0.115602 0.002520 0.114641
 0.653974 0.002520 0.172324 0.171182
 0.823779 0.115602 0.059061 0.001559
 0.767238 0.228684 0.002520 0.001559
 0.001559 0.002520 0.172143 0.823779
 0.145106 0.455029 0.059061 0.340805
 0.680050 0.315871 0.002520 0.001559
 0.823779 0.059061 0.059061 0.058100

MOTIF 4-ACCTGGGG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 1.0e+000
 0.984573 0.005891 0.005891 0.003645
 0.003645 0.986820 0.005891 0.003645
 0.003645 0.986820 0.005891 0.003645
 0.003645 0.138085 0.005891 0.852380
 0.003645 0.005891 0.986820 0.003645
 0.135838 0.270703 0.589814 0.003645
 0.003645 0.138085 0.854626 0.003645
 0.003645 0.005891 0.932096 0.058368

MOTIF 5-RTTCCCGC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 7 P= 1.0e+000
 0.655338 0.007245 0.332935 0.004482
 0.004482 0.169829 0.007245 0.818444
 0.004482 0.007245 0.007245 0.981027
 0.004482 0.983790 0.007245 0.004482
 0.004482 0.983790 0.007245 0.004482
 0.167065 0.821207 0.007245 0.004482
 0.004482 0.007245 0.983790 0.004482
 0.004482 0.983790 0.007245 0.004482

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/HDAC2.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_HDAC2/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n09.farnam.hpc.yale.internal
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FINALTIME:	0.70 seconds
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