********************************************************************************
STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
********************************************************************************
MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

********************************************************************************


********************************************************************************
REFERENCE
********************************************************************************
If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
********************************************************************************


ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.175 C 0.325 G 0.325 T 0.175 

MOTIF 1-AGGACTAC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 24 P= 5.5e-002
 0.924982 0.029564 0.029564 0.015891
 0.015891 0.029564 0.938655 0.015891
 0.015891 0.029564 0.938655 0.015891
 0.924982 0.029564 0.029564 0.015891
 0.015891 0.938655 0.029564 0.015891
 0.015891 0.029564 0.029564 0.924982
 0.924982 0.029564 0.029564 0.015891
 0.015891 0.938655 0.029564 0.015891

MOTIF 2-YGCTGGGA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 1.2e-001
 0.187871 0.321640 0.022060 0.468428
 0.002336 0.096964 0.898365 0.002336
 0.002336 0.990983 0.004345 0.002336
 0.002336 0.004345 0.004345 0.988974
 0.002336 0.004345 0.990983 0.002336
 0.002336 0.004345 0.990983 0.002336
 0.002336 0.004345 0.990983 0.002336
 0.988974 0.004345 0.004345 0.002336

MOTIF 3-CSSCGSSG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 32 P= 5.0e-001
 0.001386 0.994651 0.002578 0.001386
 0.001386 0.633001 0.364227 0.001386
 0.001386 0.326499 0.494342 0.177774
 0.001386 0.994651 0.002578 0.001386
 0.001386 0.002578 0.994651 0.001386
 0.177774 0.494342 0.326499 0.001386
 0.001386 0.364227 0.633001 0.001386
 0.001386 0.002578 0.994651 0.001386

MOTIF 4-CGCGCCGC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 8 P= 5.0e-001
 0.015891 0.938655 0.029564 0.015891
 0.015891 0.029564 0.938655 0.015891
 0.015891 0.938655 0.029564 0.015891
 0.015891 0.029564 0.938655 0.015891
 0.015891 0.938655 0.029564 0.015891
 0.015891 0.938655 0.029564 0.015891
 0.015891 0.029564 0.938655 0.015891
 0.015891 0.938655 0.029564 0.015891

MOTIF 5-AGAGCTCT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 10 P= 1.0e+000
 0.988264 0.004625 0.004625 0.002486
 0.002486 0.152492 0.743959 0.101064
 0.643242 0.300358 0.004625 0.051775
 0.051775 0.300358 0.645381 0.002486
 0.002486 0.645381 0.300358 0.051775
 0.051775 0.004625 0.300358 0.643242
 0.101064 0.743959 0.152492 0.002486
 0.002486 0.004625 0.004625 0.988264

********************************************************************************
Stopped because maximum number of motifs (5) reached.
********************************************************************************
COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/HCFC1.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_HCFC1/ --w 8 --nmotifs 5 --verbosity 1
********************************************************************************
CPU:		c22n04.farnam.hpc.yale.internal
********************************************************************************
FINALTIME:	0.68 seconds
********************************************************************************