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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.156 C 0.344 G 0.344 T 0.156 

MOTIF 1-GCTCCCAC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 27 P= 7.0e-001
 0.022729 0.002583 0.921443 0.053245
 0.001173 0.764611 0.054654 0.179561
 0.053245 0.054654 0.159301 0.732800
 0.001173 0.942999 0.054654 0.001173
 0.001173 0.890928 0.002583 0.105316
 0.001173 0.995070 0.002583 0.001173
 0.983701 0.002583 0.012542 0.001173
 0.053245 0.629561 0.211878 0.105316

MOTIF 2-CGCGGGGC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 1.0e+000
 0.001536 0.857230 0.071539 0.069695
 0.001536 0.139917 0.857011 0.001536
 0.001536 0.993547 0.003381 0.001536
 0.001536 0.139917 0.857011 0.001536
 0.001536 0.003381 0.993547 0.001536
 0.001536 0.208516 0.788412 0.001536
 0.069804 0.037460 0.891200 0.001536
 0.001536 0.925389 0.003381 0.069695

MOTIF 3-AACGCGGC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 6 P= 1.0e+000
 0.923291 0.031255 0.031255 0.014200
 0.923291 0.031255 0.031255 0.014200
 0.014200 0.940345 0.031255 0.014200
 0.014200 0.031255 0.940345 0.014200
 0.014200 0.940345 0.031255 0.014200
 0.014200 0.031255 0.940345 0.014200
 0.014200 0.031255 0.940345 0.014200
 0.014200 0.940345 0.031255 0.014200

MOTIF 4-CAGCGGCG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 1.0e+000
 0.078669 0.915782 0.003816 0.001734
 0.759085 0.003816 0.235365 0.001734
 0.001734 0.035665 0.960868 0.001734
 0.001734 0.992717 0.003816 0.001734
 0.001734 0.157934 0.838599 0.001734
 0.001734 0.035665 0.960868 0.001734
 0.001734 0.992717 0.003816 0.001734
 0.078669 0.003816 0.761664 0.155851

MOTIF 5-CGCAGCAG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 5 P= 1.0e+000
 0.014200 0.940345 0.031255 0.014200
 0.014200 0.031255 0.940345 0.014200
 0.014200 0.940345 0.031255 0.014200
 0.923291 0.031255 0.031255 0.014200
 0.014200 0.031255 0.940345 0.014200
 0.014200 0.940345 0.031255 0.014200
 0.923291 0.031255 0.031255 0.014200
 0.014200 0.031255 0.940345 0.014200

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/GATAD2B.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_GATAD2B/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n10.farnam.hpc.yale.internal
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FINALTIME:	0.66 seconds
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