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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.227 C 0.273 G 0.273 T 0.227 

MOTIF 1-AGGTRRAM STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 21 P= 7.6e-001
 0.993938 0.002140 0.002140 0.001782
 0.164891 0.002140 0.591026 0.241943
 0.001782 0.165249 0.831187 0.001782
 0.001782 0.002140 0.002140 0.993938
 0.590668 0.002140 0.405410 0.001782
 0.536474 0.187756 0.273988 0.001782
 0.830829 0.002140 0.165249 0.001782
 0.427384 0.383077 0.187756 0.001782

MOTIF 2-CGCCGCCT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 1.0e+000
 0.002237 0.992840 0.002686 0.002237
 0.002237 0.002686 0.992840 0.002237
 0.070486 0.924591 0.002686 0.002237
 0.138734 0.719845 0.002686 0.138734
 0.002237 0.002686 0.787765 0.207312
 0.002237 0.992840 0.002686 0.002237
 0.002237 0.719845 0.207432 0.070486
 0.070486 0.105059 0.207542 0.616914

MOTIF 3-GAATGAAC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 7 P= 1.0e+000
 0.004333 0.005203 0.986131 0.004333
 0.853068 0.005203 0.137396 0.004333
 0.930538 0.005203 0.059926 0.004333
 0.004333 0.137396 0.270015 0.588256
 0.004333 0.005203 0.986131 0.004333
 0.985262 0.005203 0.005203 0.004333
 0.588256 0.005203 0.270015 0.136527
 0.004333 0.986131 0.005203 0.004333

MOTIF 4-GACRACCK STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 6 P= 1.0e+000
 0.005335 0.006405 0.982925 0.005335
 0.981854 0.006405 0.006405 0.005335
 0.005335 0.982925 0.006405 0.005335
 0.493595 0.006405 0.331912 0.168088
 0.981854 0.006405 0.006405 0.005335
 0.005335 0.820172 0.169159 0.005335
 0.005335 0.820172 0.169159 0.005335
 0.168088 0.006405 0.331912 0.493595

MOTIF 5-CTGCTCAC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 5 P= 1.0e+000
 0.020655 0.933891 0.024800 0.020655
 0.020655 0.024800 0.024800 0.929745
 0.020655 0.024800 0.933891 0.020655
 0.020655 0.933891 0.024800 0.020655
 0.020655 0.024800 0.024800 0.929745
 0.020655 0.933891 0.024800 0.020655
 0.929745 0.024800 0.024800 0.020655
 0.020655 0.933891 0.024800 0.020655

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/FOXK2.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_FOXK2/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n04.farnam.hpc.yale.internal
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FINALTIME:	0.73 seconds
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