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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.203 C 0.297 G 0.297 T 0.203 

MOTIF 1-CAGCCAAT STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 17 P= 5.0e-001
 0.002390 0.991728 0.003493 0.002390
 0.990624 0.003493 0.003493 0.002390
 0.002390 0.003493 0.991728 0.002390
 0.083943 0.910174 0.003493 0.002390
 0.002390 0.991728 0.003493 0.002390
 0.990624 0.003493 0.003493 0.002390
 0.745964 0.003493 0.085047 0.165496
 0.002390 0.003493 0.003493 0.990624

MOTIF 2-ATAGGAAG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 8 P= 7.6e-001
 0.740415 0.005257 0.250732 0.003596
 0.003596 0.127995 0.005257 0.863152
 0.863152 0.127995 0.005257 0.003596
 0.003596 0.127995 0.619338 0.249071
 0.003596 0.005257 0.987550 0.003596
 0.740415 0.250732 0.005257 0.003596
 0.985889 0.005257 0.005257 0.003596
 0.003596 0.127995 0.864813 0.003596

MOTIF 3-CCGGMACG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 1.0e+000
 0.126383 0.741974 0.005259 0.126383
 0.003598 0.987545 0.005259 0.003598
 0.003598 0.128045 0.741974 0.126383
 0.126383 0.005259 0.864759 0.003598
 0.249169 0.496402 0.128045 0.126383
 0.863098 0.005259 0.128045 0.003598
 0.003598 0.987545 0.005259 0.003598
 0.003598 0.005259 0.987545 0.003598

MOTIF 4-GCCGTCCT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 1.0e+000
 0.101338 0.004217 0.891561 0.002885
 0.002885 0.990013 0.004217 0.002885
 0.200107 0.694338 0.004217 0.101338
 0.002885 0.004217 0.990013 0.002885
 0.002885 0.004217 0.102670 0.890228
 0.002885 0.793108 0.102670 0.101338
 0.200107 0.694338 0.102670 0.002885
 0.002885 0.102670 0.004217 0.890228

MOTIF 5-AGAGAGGC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 1.0e+000
 0.927555 0.026991 0.026991 0.018464
 0.018464 0.026991 0.936082 0.018464
 0.927555 0.026991 0.026991 0.018464
 0.018464 0.026991 0.936082 0.018464
 0.927555 0.026991 0.026991 0.018464
 0.018464 0.026991 0.936082 0.018464
 0.018464 0.026991 0.936082 0.018464
 0.018464 0.936082 0.026991 0.018464

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/FOS.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_FOS/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n09.farnam.hpc.yale.internal
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FINALTIME:	0.71 seconds
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