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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.25 C 0.25 G 0.25 T 0.25 

MOTIF 1-CAWCCASM STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 1.0e+000
 0.003550 0.989341 0.003559 0.003550
 0.890786 0.003559 0.102105 0.003550
 0.397736 0.003559 0.003559 0.595146
 0.003550 0.989341 0.003559 0.003550
 0.102097 0.890795 0.003559 0.003550
 0.890786 0.102105 0.003559 0.003550
 0.003550 0.299198 0.595155 0.102097
 0.496283 0.299198 0.003559 0.200960

MOTIF 2-GCGGAGAT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 1.0e+000
 0.003580 0.003589 0.989250 0.003580
 0.003580 0.889861 0.003589 0.102970
 0.102970 0.003589 0.889861 0.003580
 0.102970 0.003589 0.889861 0.003580
 0.600235 0.193817 0.003589 0.202359
 0.102970 0.003589 0.889861 0.003580
 0.740769 0.003589 0.252062 0.003580
 0.102970 0.293526 0.003589 0.599916

MOTIF 3-CMAAGAAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 28 P= 1.0e+000
 0.220845 0.742464 0.035458 0.001233
 0.372012 0.508685 0.001236 0.118067
 0.528958 0.098015 0.138126 0.234902
 0.962073 0.001236 0.001236 0.035455
 0.001233 0.001236 0.927854 0.069678
 0.605571 0.172348 0.001236 0.220845
 0.680015 0.001236 0.035458 0.283291
 0.893628 0.001236 0.103903 0.001233

MOTIF 4-AGAKGHCA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 1.0e+000
 0.989333 0.003559 0.003559 0.003550
 0.003550 0.003559 0.989341 0.003550
 0.792240 0.003559 0.003559 0.200643
 0.102097 0.003559 0.595155 0.299190
 0.200643 0.003559 0.792248 0.003550
 0.398053 0.397745 0.003559 0.200643
 0.003550 0.989341 0.003559 0.003550
 0.989333 0.003559 0.003559 0.003550

MOTIF 5-CCTCTCCC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 6 P= 1.0e+000
 0.022700 0.931845 0.022755 0.022700
 0.022700 0.931845 0.022755 0.022700
 0.022700 0.022755 0.022755 0.931791
 0.022700 0.931845 0.022755 0.022700
 0.022700 0.022755 0.022755 0.931791
 0.022700 0.931845 0.022755 0.022700
 0.022700 0.931845 0.022755 0.022700
 0.022700 0.931845 0.022755 0.022700

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/EZH2.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_EZH2/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n10.farnam.hpc.yale.internal
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FINALTIME:	0.70 seconds
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