********************************************************************************
STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
********************************************************************************
MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

********************************************************************************


********************************************************************************
REFERENCE
********************************************************************************
If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
********************************************************************************


ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.299 C 0.201 G 0.201 T 0.299 

MOTIF 1-AGAATAAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 5.0e-001
 0.936300 0.018245 0.018245 0.027209
 0.027209 0.018245 0.927336 0.027209
 0.936300 0.018245 0.018245 0.027209
 0.936300 0.018245 0.018245 0.027209
 0.027209 0.018245 0.018245 0.936300
 0.936300 0.018245 0.018245 0.027209
 0.936300 0.018245 0.018245 0.027209
 0.936300 0.018245 0.018245 0.027209

MOTIF 2-AGAAGRTG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 8 P= 9.5e-001
 0.988737 0.003226 0.003226 0.004811
 0.004811 0.003226 0.987152 0.004811
 0.877322 0.003226 0.114641 0.004811
 0.988737 0.003226 0.003226 0.004811
 0.227642 0.049348 0.672077 0.050933
 0.496953 0.003226 0.495010 0.004811
 0.116226 0.003226 0.003226 0.877322
 0.004811 0.003226 0.875737 0.116226

MOTIF 3-CACTCCAK STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 6 P= 1.0e+000
 0.008389 0.977598 0.005625 0.008389
 0.980361 0.005625 0.005625 0.008389
 0.008389 0.977598 0.005625 0.008389
 0.008389 0.005625 0.199895 0.786092
 0.008389 0.783328 0.199895 0.008389
 0.008389 0.977598 0.005625 0.008389
 0.980361 0.005625 0.005625 0.008389
 0.008389 0.005625 0.394789 0.591197

MOTIF 4-TCACTAAG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 1.0e+000
 0.003089 0.002071 0.073609 0.921231
 0.146164 0.848675 0.002071 0.003089
 0.891616 0.031686 0.002071 0.074627
 0.146164 0.848675 0.002071 0.003089
 0.003089 0.216915 0.031686 0.748311
 0.677003 0.002071 0.145147 0.175779
 0.777925 0.002071 0.073609 0.146395
 0.289470 0.002071 0.705370 0.003089

MOTIF 5-ATTTCGCK STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 6 P= 1.0e+000
 0.801899 0.185123 0.005209 0.007769
 0.007769 0.079687 0.005209 0.907335
 0.187682 0.185123 0.005209 0.621986
 0.007769 0.005209 0.005209 0.981813
 0.007769 0.979253 0.005209 0.007769
 0.007769 0.005209 0.979253 0.007769
 0.007769 0.724862 0.005209 0.262160
 0.007769 0.185123 0.439514 0.367595

********************************************************************************
Stopped because maximum number of motifs (5) reached.
********************************************************************************
COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/ETV6.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_ETV6/ --w 8 --nmotifs 5 --verbosity 1
********************************************************************************
CPU:		c17n09.farnam.hpc.yale.internal
********************************************************************************
FINALTIME:	0.69 seconds
********************************************************************************