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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.184 C 0.316 G 0.316 T 0.184 

MOTIF 1-GRACTACA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 20 P= 5.0e-001
 0.001862 0.003194 0.993083 0.001862
 0.424654 0.003194 0.570290 0.001862
 0.991750 0.003194 0.003194 0.001862
 0.071949 0.922996 0.003194 0.001862
 0.001862 0.003194 0.003194 0.991750
 0.991750 0.003194 0.003194 0.001862
 0.001862 0.993083 0.003194 0.001862
 0.991750 0.003194 0.003194 0.001862

MOTIF 2-CAGGAWGY STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 31 P= 8.8e-001
 0.001047 0.798975 0.120077 0.079901
 0.810702 0.186454 0.001797 0.001047
 0.001047 0.159504 0.838402 0.001047
 0.001047 0.080777 0.917129 0.001047
 0.877079 0.001797 0.120077 0.001047
 0.439414 0.080650 0.080650 0.399286
 0.001047 0.001797 0.996109 0.001047
 0.001047 0.531556 0.057545 0.409851

MOTIF 3-CGGGAGGG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 1.0e+000
 0.002617 0.793181 0.004491 0.199711
 0.101164 0.103038 0.793181 0.002617
 0.101164 0.004491 0.891727 0.002617
 0.002617 0.004491 0.990274 0.002617
 0.889854 0.103038 0.004491 0.002617
 0.002617 0.004491 0.990274 0.002617
 0.002617 0.300448 0.694317 0.002617
 0.002617 0.004491 0.891727 0.101164

MOTIF 4-CCCAGCAG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 8 P= 1.0e+000
 0.003714 0.986198 0.006373 0.003714
 0.003714 0.986198 0.006373 0.003714
 0.003714 0.986198 0.006373 0.003714
 0.983539 0.006373 0.006373 0.003714
 0.143561 0.006373 0.846352 0.003714
 0.003714 0.846352 0.146220 0.003714
 0.703396 0.006373 0.286516 0.003714
 0.003714 0.006373 0.846352 0.143561

MOTIF 5-CAAGCCCG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 1.0e+000
 0.002901 0.989218 0.004979 0.002901
 0.877898 0.004979 0.114222 0.002901
 0.987141 0.004979 0.004979 0.002901
 0.002901 0.114222 0.770733 0.112144
 0.002901 0.770381 0.223816 0.002901
 0.002901 0.989218 0.004979 0.002901
 0.002901 0.989218 0.004979 0.002901
 0.002901 0.004979 0.770381 0.221739

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/ETS1.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_ETS1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n04.farnam.hpc.yale.internal
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FINALTIME:	0.70 seconds
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