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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.252 C 0.248 G 0.248 T 0.252 

MOTIF 1-GACCTTGA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 55 P= 9.1e-001
 0.001404 0.040050 0.957142 0.001404
 0.853463 0.066418 0.040050 0.040069
 0.001404 0.995807 0.001385 0.001404
 0.040069 0.918477 0.040050 0.001404
 0.017410 0.040050 0.001385 0.941155
 0.001404 0.001385 0.040050 0.957161
 0.001404 0.095180 0.863347 0.040069
 0.661856 0.040050 0.231657 0.066437

MOTIF 2-ACTCTGBC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 1.0e+000
 0.592726 0.150154 0.180686 0.076434
 0.076434 0.918245 0.002642 0.002678
 0.002678 0.002642 0.002642 0.992038
 0.002678 0.844490 0.076398 0.076434
 0.002678 0.002642 0.002642 0.992038
 0.002678 0.002642 0.992001 0.002678
 0.002678 0.445178 0.223910 0.328234
 0.076434 0.770734 0.150154 0.002678

MOTIF 3-AAGAGGAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 1.0e+000
 0.931973 0.022573 0.022573 0.022882
 0.931973 0.022573 0.022573 0.022882
 0.022882 0.022573 0.931664 0.022882
 0.931973 0.022573 0.022573 0.022882
 0.022882 0.022573 0.931664 0.022882
 0.022882 0.022573 0.931664 0.022882
 0.931973 0.022573 0.022573 0.022882
 0.931973 0.022573 0.022573 0.022882

MOTIF 4-GTTTACAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 7 P= 1.0e+000
 0.022882 0.022573 0.931664 0.022882
 0.022882 0.022573 0.022573 0.931973
 0.022882 0.022573 0.022573 0.931973
 0.022882 0.022573 0.022573 0.931973
 0.931973 0.022573 0.022573 0.022882
 0.022882 0.931664 0.022573 0.022882
 0.931973 0.022573 0.022573 0.022882
 0.931973 0.022573 0.022573 0.022882

MOTIF 5-ACCTTCCT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 1.0e+000
 0.931973 0.022573 0.022573 0.022882
 0.022882 0.931664 0.022573 0.022882
 0.022882 0.931664 0.022573 0.022882
 0.022882 0.022573 0.022573 0.931973
 0.022882 0.022573 0.022573 0.931973
 0.022882 0.931664 0.022573 0.022882
 0.022882 0.931664 0.022573 0.022882
 0.022882 0.022573 0.022573 0.931973

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/ESRRA.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_ESRRA/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n04.farnam.hpc.yale.internal
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FINALTIME:	0.68 seconds
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