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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.197 C 0.303 G 0.303 T 0.197 

MOTIF 1-ASCCAAKG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 5.0e-001
 0.989036 0.004134 0.004134 0.002696
 0.002696 0.516749 0.477858 0.002696
 0.002696 0.761910 0.232697 0.002696
 0.002696 0.895790 0.004134 0.097380
 0.989036 0.004134 0.004134 0.002696
 0.760473 0.232697 0.004134 0.002696
 0.002696 0.004134 0.611738 0.381432
 0.002696 0.232697 0.761910 0.002696

MOTIF 2-CKCTCAGT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 5.0e-001
 0.003986 0.985917 0.006111 0.003986
 0.003986 0.006111 0.426028 0.563876
 0.003986 0.985917 0.006111 0.003986
 0.003986 0.006111 0.286055 0.703848
 0.003986 0.985917 0.006111 0.003986
 0.983793 0.006111 0.006111 0.003986
 0.003986 0.006111 0.845945 0.143959
 0.003986 0.006111 0.286055 0.703848

MOTIF 3-AGGGCTAC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 7.6e-001
 0.899935 0.093596 0.003915 0.002554
 0.181915 0.093596 0.721936 0.002554
 0.002554 0.093596 0.811616 0.092234
 0.002554 0.003915 0.990977 0.002554
 0.182203 0.631967 0.003915 0.181915
 0.002554 0.183276 0.003915 0.810255
 0.989616 0.003915 0.003915 0.002554
 0.002554 0.811616 0.003915 0.181915

MOTIF 4-CCGGAAGY STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 55 P= 9.1e-001
 0.061587 0.935816 0.001572 0.001025
 0.001025 0.996377 0.001572 0.001025
 0.001025 0.001572 0.996377 0.001025
 0.037032 0.001572 0.945465 0.015931
 0.959824 0.001572 0.037579 0.001025
 0.923701 0.001572 0.073701 0.001025
 0.124067 0.001572 0.873335 0.001025
 0.001025 0.440642 0.052484 0.505848

MOTIF 5-ATATGGGC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 1.0e+000
 0.927036 0.027509 0.027509 0.017945
 0.017945 0.027509 0.027509 0.927036
 0.927036 0.027509 0.027509 0.017945
 0.017945 0.027509 0.027509 0.927036
 0.017945 0.027509 0.936600 0.017945
 0.017945 0.027509 0.936600 0.017945
 0.017945 0.027509 0.936600 0.017945
 0.017945 0.936600 0.027509 0.017945

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/ELK1.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_ELK1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n04.farnam.hpc.yale.internal
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FINALTIME:	0.67 seconds
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