******************************************************************************** STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey, "STREME: Accurate and versatile sequence motif discovery", bioRxiv, (preprint), Nov. 23, 2020. ******************************************************************************** ALPHABET= ACGT strands: + - Background letter frequencies A 0.232 C 0.268 G 0.268 T 0.232 MOTIF 1-ACGAGGAR STREME-1 letter-probability matrix: alength= 4 w= 8 nsites= 7 P= 1.0e+000 0.981986 0.006280 0.006280 0.005454 0.168122 0.657476 0.006280 0.168122 0.005454 0.006280 0.982812 0.005454 0.819318 0.006280 0.006280 0.168122 0.005454 0.006280 0.982812 0.005454 0.005454 0.006280 0.982812 0.005454 0.981986 0.006280 0.006280 0.005454 0.656126 0.006280 0.332140 0.005454 MOTIF 2-GTCAGYTT STREME-2 letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 1.0e+000 0.002899 0.003338 0.990863 0.002899 0.002899 0.003338 0.089809 0.903954 0.002899 0.990863 0.003338 0.002899 0.990424 0.003338 0.003338 0.002899 0.002899 0.263027 0.644704 0.089369 0.002899 0.522438 0.039134 0.435529 0.089369 0.089809 0.089809 0.731013 0.002899 0.176557 0.003338 0.817206 MOTIF 3-AAATGGGA STREME-3 letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 1.0e+000 0.984506 0.005401 0.005401 0.004691 0.704688 0.145311 0.145311 0.004691 0.984506 0.005401 0.005401 0.004691 0.004691 0.005401 0.005401 0.984506 0.004691 0.005401 0.985217 0.004691 0.144600 0.005401 0.705398 0.144600 0.004691 0.005401 0.985217 0.004691 0.844597 0.145311 0.005401 0.004691 MOTIF 4-AGGAACCG STREME-4 letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 1.0e+000 0.872680 0.003224 0.121296 0.002800 0.037368 0.003224 0.956609 0.002800 0.002800 0.086728 0.873104 0.037368 0.872680 0.086728 0.037792 0.002800 0.740239 0.003224 0.086728 0.169809 0.002800 0.907672 0.086728 0.002800 0.086304 0.740395 0.003224 0.170077 0.086304 0.086728 0.824168 0.002800 MOTIF 5-CTGRGAAK STREME-5 letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 1.0e+000 0.001837 0.994212 0.002115 0.001837 0.001837 0.002115 0.002115 0.993934 0.001837 0.221217 0.533156 0.243791 0.330667 0.056890 0.610606 0.001837 0.001837 0.134341 0.861986 0.001837 0.993934 0.002115 0.002115 0.001837 0.884383 0.002115 0.002115 0.111388 0.001837 0.094244 0.495802 0.408118 ******************************************************************************** Stopped because maximum number of motifs (5) reached. ******************************************************************************** COMMAND: streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/EED.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_EED/ --w 8 --nmotifs 5 --verbosity 1 ******************************************************************************** CPU: c17n09.farnam.hpc.yale.internal ******************************************************************************** FINALTIME: 0.67 seconds ********************************************************************************