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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.205 C 0.295 G 0.295 T 0.205 

MOTIF 1-CCMAGGGA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 82 P= 9.8e-002
 0.000807 0.821926 0.001159 0.176108
 0.000807 0.997227 0.001159 0.000807
 0.470544 0.461713 0.028407 0.039336
 0.769173 0.055744 0.148315 0.026769
 0.000807 0.001159 0.997227 0.000807
 0.163896 0.001159 0.834139 0.000807
 0.000807 0.001159 0.997227 0.000807
 0.805518 0.137931 0.055744 0.000807

MOTIF 2-AAGCCCTC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 5.0e-001
 0.818879 0.156170 0.023431 0.001520
 0.746301 0.126089 0.104841 0.022769
 0.155508 0.053512 0.789460 0.001520
 0.022769 0.849621 0.104841 0.022769
 0.052850 0.840789 0.053512 0.052850
 0.074098 0.768212 0.053512 0.104179
 0.190512 0.156170 0.074760 0.578558
 0.001520 0.857115 0.088515 0.052850

MOTIF 3-CAGATGTA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 6 P= 1.0e+000
 0.004516 0.984485 0.006483 0.004516
 0.982518 0.006483 0.006483 0.004516
 0.156996 0.158963 0.527045 0.156996
 0.830038 0.006483 0.158963 0.004516
 0.004516 0.006483 0.006483 0.982518
 0.004516 0.158963 0.768883 0.067638
 0.004516 0.006483 0.006483 0.982518
 0.677558 0.158963 0.006483 0.156996

MOTIF 4-ACACATTG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 5 P= 1.0e+000
 0.927755 0.026791 0.026791 0.018664
 0.018664 0.935882 0.026791 0.018664
 0.927755 0.026791 0.026791 0.018664
 0.018664 0.935882 0.026791 0.018664
 0.927755 0.026791 0.026791 0.018664
 0.018664 0.026791 0.026791 0.927755
 0.018664 0.026791 0.026791 0.927755
 0.018664 0.026791 0.935882 0.018664

MOTIF 5-CCCACTCC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 5 P= 1.0e+000
 0.018664 0.935882 0.026791 0.018664
 0.018664 0.935882 0.026791 0.018664
 0.018664 0.935882 0.026791 0.018664
 0.927755 0.026791 0.026791 0.018664
 0.018664 0.935882 0.026791 0.018664
 0.018664 0.026791 0.026791 0.927755
 0.018664 0.935882 0.026791 0.018664
 0.018664 0.935882 0.026791 0.018664

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/EBF1.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_EBF1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n10.farnam.hpc.yale.internal
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FINALTIME:	0.60 seconds
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