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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.195 C 0.305 G 0.305 T 0.195 

MOTIF 1-GTCGTAAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 36 P= 2.1e-001
 0.116030 0.002518 0.879850 0.001603
 0.058724 0.224143 0.002518 0.714615
 0.058724 0.856387 0.059639 0.025249
 0.001603 0.026164 0.970630 0.001603
 0.001603 0.013443 0.002518 0.982436
 0.831149 0.026164 0.141084 0.001603
 0.936240 0.002518 0.002518 0.058724
 0.855473 0.083285 0.002518 0.058724

MOTIF 2-GCGCCGCC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 7.6e-001
 0.075700 0.224858 0.697377 0.002066
 0.075700 0.845356 0.076879 0.002066
 0.002066 0.150749 0.845119 0.002066
 0.002066 0.992622 0.003245 0.002066
 0.002066 0.992622 0.003245 0.002066
 0.075700 0.003245 0.918989 0.002066
 0.032548 0.888507 0.003245 0.075700
 0.002066 0.992622 0.003245 0.002066

MOTIF 3-GCGWCGCA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 7 P= 7.6e-001
 0.004565 0.007169 0.983701 0.004565
 0.004565 0.821033 0.007169 0.167233
 0.004565 0.007169 0.983701 0.004565
 0.655237 0.007169 0.007169 0.330424
 0.004565 0.983701 0.007169 0.004565
 0.004565 0.007169 0.983701 0.004565
 0.004565 0.821033 0.169838 0.004565
 0.818428 0.007169 0.007169 0.167233

MOTIF 4-GACCCGGA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 6 P= 1.0e+000
 0.017682 0.027773 0.936864 0.017682
 0.926773 0.027773 0.027773 0.017682
 0.017682 0.936864 0.027773 0.017682
 0.017682 0.936864 0.027773 0.017682
 0.017682 0.936864 0.027773 0.017682
 0.017682 0.027773 0.936864 0.017682
 0.017682 0.027773 0.936864 0.017682
 0.926773 0.027773 0.027773 0.017682

MOTIF 5-CAGAGGGA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 5 P= 1.0e+000
 0.017682 0.936864 0.027773 0.017682
 0.926773 0.027773 0.027773 0.017682
 0.017682 0.027773 0.936864 0.017682
 0.926773 0.027773 0.027773 0.017682
 0.017682 0.027773 0.936864 0.017682
 0.017682 0.027773 0.936864 0.017682
 0.017682 0.027773 0.936864 0.017682
 0.926773 0.027773 0.027773 0.017682

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/E4F1.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_E4F1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n05.farnam.hpc.yale.internal
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FINALTIME:	0.66 seconds
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