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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.197 C 0.303 G 0.303 T 0.197 

MOTIF 1-ATGGGCGG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 23 P= 2.4e-001
 0.682611 0.064510 0.251125 0.001754
 0.125564 0.002704 0.188719 0.683013
 0.001754 0.002704 0.993788 0.001754
 0.001754 0.064510 0.931982 0.001754
 0.001754 0.064510 0.931982 0.001754
 0.001754 0.993788 0.002704 0.001754
 0.063560 0.002704 0.931982 0.001754
 0.001754 0.002704 0.931982 0.063560

MOTIF 2-GCGGGAGC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 23 P= 5.0e-001
 0.003027 0.004668 0.989278 0.003027
 0.003027 0.989278 0.004668 0.003027
 0.003027 0.169476 0.824469 0.003027
 0.003027 0.111341 0.882605 0.003027
 0.003027 0.004668 0.989278 0.003027
 0.880964 0.004668 0.004668 0.109700
 0.109700 0.004668 0.882605 0.003027
 0.182446 0.596170 0.004668 0.216717

MOTIF 3-CTCCCGCG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 1.0e+000
 0.092199 0.901334 0.003923 0.002544
 0.002544 0.003923 0.003923 0.989610
 0.002544 0.721158 0.273753 0.002544
 0.002544 0.990989 0.003923 0.002544
 0.002544 0.990989 0.003923 0.002544
 0.092199 0.003923 0.901334 0.002544
 0.092199 0.722025 0.093577 0.092199
 0.092199 0.003923 0.811680 0.092199

MOTIF 4-AATAGGAG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 1.0e+000
 0.878011 0.114103 0.004783 0.003102
 0.987331 0.004783 0.004783 0.003102
 0.222093 0.004783 0.004783 0.768340
 0.768691 0.223423 0.004783 0.003102
 0.003102 0.114103 0.879692 0.003102
 0.112422 0.223423 0.661053 0.003102
 0.987331 0.004783 0.004783 0.003102
 0.112422 0.114103 0.661053 0.112422

MOTIF 5-AATGGGGC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 8 P= 1.0e+000
 0.852424 0.138037 0.005787 0.003753
 0.852424 0.138037 0.005787 0.003753
 0.003753 0.005787 0.138037 0.852424
 0.003753 0.138037 0.799711 0.058500
 0.003753 0.005787 0.854458 0.136003
 0.003753 0.005787 0.854458 0.136003
 0.003753 0.005787 0.854458 0.136003
 0.003753 0.986707 0.005787 0.003753

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/E2F4.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_E2F4/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n04.farnam.hpc.yale.internal
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FINALTIME:	0.68 seconds
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