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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.211 C 0.289 G 0.289 T 0.211 

MOTIF 1-ACATACYM STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 2.4e-001
 0.878191 0.004563 0.113921 0.003326
 0.112684 0.879428 0.004563 0.003326
 0.987549 0.004563 0.004563 0.003326
 0.112684 0.004563 0.004563 0.878191
 0.878191 0.004563 0.113921 0.003326
 0.003326 0.770069 0.223279 0.003326
 0.003326 0.332637 0.004563 0.659474
 0.331400 0.551353 0.113921 0.003326

MOTIF 2-GRTGHAKA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 1.0e+000
 0.001588 0.106595 0.890229 0.001588
 0.523674 0.002178 0.420352 0.053796
 0.001588 0.106595 0.002178 0.889639
 0.001588 0.002178 0.994646 0.001588
 0.419256 0.315935 0.002178 0.262631
 0.733013 0.263221 0.002178 0.001588
 0.001588 0.002178 0.472055 0.524178
 0.733013 0.002178 0.263221 0.001588

MOTIF 3-GAAATGAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 1.0e+000
 0.003547 0.121508 0.871398 0.003547
 0.870078 0.004867 0.121508 0.003547
 0.986720 0.004867 0.004867 0.003547
 0.587128 0.287817 0.121508 0.003547
 0.003547 0.004867 0.004867 0.986720
 0.003547 0.004867 0.988039 0.003547
 0.986720 0.004867 0.004867 0.003547
 0.753062 0.004867 0.238524 0.003547

MOTIF 4-ACTGKGCG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 1.0e+000
 0.988112 0.004356 0.004356 0.003175
 0.107585 0.884883 0.004356 0.003175
 0.003175 0.004356 0.004356 0.988112
 0.003175 0.213176 0.780473 0.003175
 0.003175 0.004356 0.526406 0.466062
 0.003175 0.004356 0.989293 0.003175
 0.107585 0.884883 0.004356 0.003175
 0.150808 0.004356 0.737251 0.107585

MOTIF 5-CGSCCGYC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 24 P= 1.0e+000
 0.045645 0.622592 0.153223 0.178540
 0.001347 0.001848 0.951159 0.045645
 0.001347 0.356233 0.641073 0.001347
 0.001347 0.995457 0.001848 0.001347
 0.001347 0.773967 0.001848 0.222838
 0.178540 0.001848 0.818265 0.001347
 0.001347 0.445114 0.001848 0.551691
 0.001347 0.995457 0.001848 0.001347

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/DPF2.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_DPF2/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n09.farnam.hpc.yale.internal
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FINALTIME:	0.85 seconds
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