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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.287 C 0.213 G 0.213 T 0.287 

MOTIF 1-GATCAATA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 2.4e-001
 0.235569 0.001780 0.644040 0.118611
 0.936025 0.001780 0.001780 0.060414
 0.002404 0.001780 0.001780 0.994035
 0.002404 0.993411 0.001780 0.002404
 0.994035 0.001780 0.001780 0.002404
 0.994035 0.001780 0.001780 0.002404
 0.002404 0.001780 0.001780 0.994035
 0.819819 0.001780 0.117987 0.060414

MOTIF 2-AGAAACTG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 5.0e-001
 0.573738 0.002562 0.253276 0.170424
 0.003460 0.002562 0.788995 0.204983
 0.907934 0.086044 0.002562 0.003460
 0.991416 0.002562 0.002562 0.003460
 0.907934 0.002562 0.002562 0.086942
 0.003460 0.788995 0.002562 0.204983
 0.254175 0.002562 0.002562 0.740702
 0.003460 0.002562 0.990518 0.003460

MOTIF 3-CAAAACCA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 7 P= 1.0e+000
 0.116033 0.653099 0.003419 0.227449
 0.719591 0.049541 0.114834 0.116033
 0.988544 0.003419 0.003419 0.004618
 0.719591 0.003419 0.114834 0.162156
 0.877129 0.003419 0.114834 0.004618
 0.004618 0.987345 0.003419 0.004618
 0.004618 0.941223 0.003419 0.050740
 0.988544 0.003419 0.003419 0.004618

MOTIF 4-CTTCTCAG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 22 P= 1.0e+000
 0.026118 0.928427 0.019336 0.026118
 0.026118 0.019336 0.019336 0.935209
 0.026118 0.019336 0.019336 0.935209
 0.026118 0.928427 0.019336 0.026118
 0.026118 0.019336 0.019336 0.935209
 0.026118 0.928427 0.019336 0.026118
 0.935209 0.019336 0.019336 0.026118
 0.026118 0.019336 0.928427 0.026118

MOTIF 5-CCCACAGG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 1.0e+000
 0.003582 0.903762 0.089074 0.003582
 0.003582 0.990184 0.002652 0.003582
 0.003582 0.903762 0.002652 0.090004
 0.904692 0.002652 0.002652 0.090004
 0.176704 0.817062 0.002652 0.003582
 0.782494 0.002652 0.211272 0.003582
 0.003582 0.002652 0.990184 0.003582
 0.090004 0.175496 0.730918 0.003582

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/CUX1.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_CUX1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n10.farnam.hpc.yale.internal
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FINALTIME:	0.74 seconds
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