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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.177 C 0.323 G 0.323 T 0.177 

MOTIF 1-GGTGACGT STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 74 P= 2.6e-001
 0.031417 0.108011 0.772004 0.088568
 0.161180 0.089724 0.741481 0.007615
 0.011348 0.052841 0.001203 0.934608
 0.026479 0.001203 0.935152 0.037167
 0.732416 0.074217 0.115250 0.078117
 0.000660 0.909332 0.037710 0.052298
 0.078117 0.001203 0.894202 0.026479
 0.026479 0.173807 0.078660 0.721054

MOTIF 2-TGACGCAM STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 5.0e-001
 0.002788 0.005084 0.005084 0.987044
 0.002788 0.005084 0.989340 0.002788
 0.877917 0.114211 0.005084 0.002788
 0.002788 0.880213 0.005084 0.111915
 0.002788 0.005084 0.989340 0.002788
 0.002788 0.989340 0.005084 0.002788
 0.768790 0.114211 0.114211 0.002788
 0.658607 0.333521 0.005084 0.002788

MOTIF 3-CCGGCGCG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 22 P= 1.0e+000
 0.001303 0.995018 0.002376 0.001303
 0.001303 0.995018 0.002376 0.001303
 0.001303 0.155707 0.841687 0.001303
 0.001303 0.002376 0.995018 0.001303
 0.154469 0.688850 0.053377 0.103304
 0.103304 0.002376 0.893017 0.001303
 0.001303 0.944017 0.053377 0.001303
 0.028783 0.258368 0.574765 0.138084

MOTIF 4-CCGCGACG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 1.0e+000
 0.207713 0.718916 0.071622 0.001749
 0.030078 0.936656 0.031518 0.001749
 0.001749 0.071622 0.924881 0.001749
 0.001749 0.993315 0.003188 0.001749
 0.001749 0.071622 0.924881 0.001749
 0.743633 0.223101 0.003188 0.030078
 0.070183 0.856446 0.071622 0.001749
 0.001749 0.003188 0.993315 0.001749

MOTIF 5-AAGGCGCG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 1.0e+000
 0.894307 0.004401 0.004401 0.096890
 0.703980 0.004401 0.289205 0.002414
 0.002414 0.004401 0.990771 0.002414
 0.002414 0.098878 0.896294 0.002414
 0.002414 0.896294 0.098878 0.002414
 0.002414 0.098878 0.896294 0.002414
 0.002414 0.896294 0.004401 0.096890
 0.002414 0.004401 0.990771 0.002414

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/CREM.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_CREM/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n05.farnam.hpc.yale.internal
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FINALTIME:	0.63 seconds
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