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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.251 C 0.249 G 0.249 T 0.251 

MOTIF 1-CCTCCCAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 1.0e+000
 0.003117 0.904408 0.003105 0.089370
 0.003117 0.990661 0.003105 0.003117
 0.089370 0.003105 0.003105 0.904421
 0.003117 0.990661 0.003105 0.003117
 0.175900 0.731625 0.003105 0.089370
 0.003117 0.954955 0.003105 0.038823
 0.990673 0.003105 0.003105 0.003117
 0.904421 0.003105 0.003105 0.089370

MOTIF 2-CACCATGY STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 7 P= 1.0e+000
 0.005863 0.982433 0.005840 0.005863
 0.982457 0.005840 0.005840 0.005863
 0.005863 0.982433 0.005840 0.005863
 0.005863 0.982433 0.005840 0.005863
 0.820215 0.005840 0.168081 0.005863
 0.005863 0.005840 0.005840 0.982457
 0.005863 0.005840 0.982433 0.005863
 0.005863 0.657951 0.005840 0.330346

MOTIF 3-AGGAAGGG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 6 P= 1.0e+000
 0.931864 0.022682 0.022682 0.022773
 0.022773 0.022682 0.931773 0.022773
 0.022773 0.022682 0.931773 0.022773
 0.931864 0.022682 0.022682 0.022773
 0.931864 0.022682 0.022682 0.022773
 0.022773 0.022682 0.931773 0.022773
 0.022773 0.022682 0.931773 0.022773
 0.022773 0.022682 0.931773 0.022773

MOTIF 4-GACAGAGC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 7 P= 1.0e+000
 0.022773 0.022682 0.931773 0.022773
 0.931864 0.022682 0.022682 0.022773
 0.022773 0.931773 0.022682 0.022773
 0.931864 0.022682 0.022682 0.022773
 0.022773 0.022682 0.931773 0.022773
 0.931864 0.022682 0.022682 0.022773
 0.022773 0.022682 0.931773 0.022773
 0.022773 0.931773 0.022682 0.022773

MOTIF 5-CCCAGCWA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 7 P= 1.0e+000
 0.005873 0.982406 0.005849 0.005873
 0.005873 0.982406 0.005849 0.005873
 0.005873 0.982406 0.005849 0.005873
 0.982429 0.005849 0.005849 0.005873
 0.005873 0.005849 0.982406 0.005873
 0.005873 0.819908 0.005849 0.168370
 0.493365 0.005849 0.005849 0.494937
 0.819932 0.005849 0.005849 0.168370

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/CHD4.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_CHD4/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n09.farnam.hpc.yale.internal
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FINALTIME:	0.81 seconds
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