********************************************************************************
STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
********************************************************************************
MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

********************************************************************************


********************************************************************************
REFERENCE
********************************************************************************
If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
********************************************************************************


ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.176 C 0.324 G 0.324 T 0.176 

MOTIF 1-CGCGAGAR STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 98 P= 2.5e-002
 0.000506 0.998056 0.000933 0.000506
 0.128389 0.000933 0.870173 0.000506
 0.000506 0.901796 0.000933 0.096766
 0.120135 0.000933 0.878427 0.000506
 0.709832 0.000933 0.288730 0.000506
 0.000506 0.120088 0.784278 0.095129
 0.997629 0.000933 0.000933 0.000506
 0.453276 0.169303 0.240395 0.137025

MOTIF 2-CGRCGYCG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 5.0e-001
 0.201041 0.617522 0.020201 0.161236
 0.041823 0.003723 0.872825 0.081628
 0.496277 0.162941 0.338764 0.002019
 0.002019 0.912630 0.003723 0.081628
 0.081628 0.003723 0.912630 0.002019
 0.002019 0.338764 0.162941 0.496277
 0.081628 0.872825 0.003723 0.041823
 0.161236 0.020201 0.617522 0.201041

MOTIF 3-ARCGGGAT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 7 P= 5.0e-001
 0.976900 0.009086 0.009086 0.004927
 0.394091 0.009086 0.591895 0.004927
 0.004927 0.981059 0.009086 0.004927
 0.004927 0.009086 0.981059 0.004927
 0.004927 0.009086 0.981059 0.004927
 0.004927 0.009086 0.786790 0.199197
 0.782630 0.009086 0.203356 0.004927
 0.004927 0.009086 0.009086 0.976900

MOTIF 4-CCGCCGCT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 10 P= 1.0e+000
 0.002499 0.990392 0.004609 0.002499
 0.101046 0.694752 0.103156 0.101046
 0.002499 0.004609 0.990392 0.002499
 0.002499 0.891845 0.103156 0.002499
 0.101046 0.891845 0.004609 0.002499
 0.002499 0.202019 0.792982 0.002499
 0.002499 0.891845 0.004609 0.101046
 0.101046 0.004609 0.004609 0.889736

MOTIF 5-CGGSACTC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 1.0e+000
 0.003548 0.986359 0.006544 0.003548
 0.003548 0.006544 0.846450 0.143458
 0.003548 0.006544 0.986359 0.003548
 0.003548 0.426272 0.566631 0.003548
 0.983364 0.006544 0.006544 0.003548
 0.003548 0.706541 0.286363 0.003548
 0.003548 0.146453 0.006544 0.843454
 0.003548 0.986359 0.006544 0.003548

********************************************************************************
Stopped because maximum number of motifs (5) reached.
********************************************************************************
COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/CHD2.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_CHD2/ --w 8 --nmotifs 5 --verbosity 1
********************************************************************************
CPU:		c17n09.farnam.hpc.yale.internal
********************************************************************************
FINALTIME:	0.70 seconds
********************************************************************************