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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.217 C 0.283 G 0.283 T 0.217 

MOTIF 1-CTGGAGGC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 22 P= 5.0e-001
 0.001700 0.831269 0.110962 0.056069
 0.001700 0.165331 0.110962 0.722007
 0.078577 0.110962 0.808762 0.001700
 0.001700 0.155976 0.840624 0.001700
 0.830572 0.002222 0.002222 0.164984
 0.056069 0.165331 0.776900 0.001700
 0.078577 0.110962 0.808762 0.001700
 0.001700 0.863132 0.056592 0.078577

MOTIF 2-AGCAGAGG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 1.0e+000
 0.962302 0.002924 0.002924 0.031851
 0.031851 0.074462 0.891451 0.002236
 0.073774 0.849528 0.002924 0.073774
 0.848840 0.074462 0.002924 0.073774
 0.073774 0.074462 0.849528 0.002236
 0.705535 0.074462 0.217767 0.002236
 0.002236 0.145999 0.849528 0.002236
 0.073774 0.002924 0.849528 0.073774

MOTIF 3-GCGCCGCC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 1.0e+000
 0.006073 0.007940 0.785643 0.200343
 0.006073 0.979913 0.007940 0.006073
 0.200343 0.007940 0.785643 0.006073
 0.006073 0.979913 0.007940 0.006073
 0.006073 0.979913 0.007940 0.006073
 0.006073 0.007940 0.979913 0.006073
 0.006073 0.979913 0.007940 0.006073
 0.006073 0.785643 0.202210 0.006073

MOTIF 4-CCGGACMG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 6 P= 1.0e+000
 0.005086 0.983180 0.006648 0.005086
 0.167754 0.820512 0.006648 0.005086
 0.005086 0.006648 0.983180 0.005086
 0.005086 0.006648 0.983180 0.005086
 0.818949 0.169317 0.006648 0.005086
 0.005086 0.983180 0.006648 0.005086
 0.493090 0.332508 0.169317 0.005086
 0.167754 0.006648 0.820512 0.005086

MOTIF 5-CCCAGCAC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 1.0e+000
 0.043465 0.851869 0.003990 0.100676
 0.198614 0.794344 0.003990 0.003052
 0.003052 0.892282 0.101614 0.003052
 0.793720 0.101614 0.101614 0.003052
 0.003052 0.003990 0.989906 0.003052
 0.003052 0.989906 0.003990 0.003052
 0.793720 0.003990 0.101614 0.100676
 0.003052 0.892282 0.101614 0.003052

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/CHD1.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_CHD1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n09.farnam.hpc.yale.internal
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FINALTIME:	0.69 seconds
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