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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.26 C 0.24 G 0.24 T 0.26 

MOTIF 1-TTGCGCAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 65 P= 1.4e-001
 0.001367 0.001265 0.001265 0.996102
 0.008922 0.001265 0.001265 0.988548
 0.055103 0.001265 0.904017 0.039615
 0.093201 0.712892 0.008820 0.185087
 0.185087 0.008820 0.712892 0.093201
 0.039615 0.904017 0.001265 0.055103
 0.988548 0.001265 0.001265 0.008922
 0.996102 0.001265 0.001265 0.001367

MOTIF 2-GATGCAAY STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 30 P= 7.0e-001
 0.052456 0.102876 0.833103 0.011565
 0.944038 0.001753 0.001753 0.052456
 0.103017 0.001753 0.001753 0.893477
 0.001894 0.001753 0.994458 0.001894
 0.174510 0.720720 0.001753 0.103017
 0.994600 0.001753 0.001753 0.001894
 0.994600 0.001753 0.001753 0.001894
 0.052456 0.488007 0.123969 0.335568

MOTIF 3-CAAGCCAG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 8 P= 1.0e+000
 0.023609 0.930936 0.021845 0.023609
 0.932700 0.021845 0.021845 0.023609
 0.932700 0.021845 0.021845 0.023609
 0.023609 0.021845 0.930936 0.023609
 0.023609 0.930936 0.021845 0.023609
 0.023609 0.930936 0.021845 0.023609
 0.932700 0.021845 0.021845 0.023609
 0.023609 0.021845 0.930936 0.023609

MOTIF 4-ATCTCCAG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 7 P= 1.0e+000
 0.932700 0.021845 0.021845 0.023609
 0.023609 0.021845 0.021845 0.932700
 0.023609 0.930936 0.021845 0.023609
 0.023609 0.021845 0.021845 0.932700
 0.023609 0.930936 0.021845 0.023609
 0.023609 0.930936 0.021845 0.023609
 0.932700 0.021845 0.021845 0.023609
 0.023609 0.021845 0.930936 0.023609

MOTIF 5-ARCAGGGC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 1.0e+000
 0.819958 0.168307 0.005639 0.006095
 0.657290 0.005639 0.330976 0.006095
 0.006095 0.982171 0.005639 0.006095
 0.819958 0.168307 0.005639 0.006095
 0.006095 0.005639 0.982171 0.006095
 0.006095 0.005639 0.982171 0.006095
 0.006095 0.005639 0.982171 0.006095
 0.006095 0.819503 0.005639 0.168763

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/CEBPB.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_CEBPB/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n04.farnam.hpc.yale.internal
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FINALTIME:	0.68 seconds
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