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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.285 C 0.215 G 0.215 T 0.285 

MOTIF 1-AGAAGTCT STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 24 P= 2.4e-001
 0.994632 0.001615 0.001615 0.002139
 0.054170 0.001615 0.942077 0.002139
 0.890402 0.001615 0.001615 0.106369
 0.994632 0.001615 0.001615 0.002139
 0.158736 0.001615 0.837511 0.002139
 0.002139 0.001615 0.001615 0.994632
 0.002139 0.972569 0.001615 0.023678
 0.316860 0.001615 0.001615 0.679911

MOTIF 2-ACAGCAGA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 5.0e-001
 0.934991 0.019555 0.019555 0.025900
 0.025900 0.928645 0.019555 0.025900
 0.934991 0.019555 0.019555 0.025900
 0.025900 0.019555 0.928645 0.025900
 0.025900 0.928645 0.019555 0.025900
 0.934991 0.019555 0.019555 0.025900
 0.025900 0.019555 0.928645 0.025900
 0.934991 0.019555 0.019555 0.025900

MOTIF 3-AGCAAGGC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 5.0e-001
 0.991539 0.002545 0.002545 0.003371
 0.003371 0.084560 0.744669 0.167400
 0.003371 0.990713 0.002545 0.003371
 0.909524 0.002545 0.002545 0.085386
 0.909524 0.002545 0.002545 0.085386
 0.003371 0.084560 0.908698 0.003371
 0.003371 0.002545 0.826684 0.167400
 0.003371 0.826684 0.002545 0.167400

MOTIF 4-GAAAGAAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 1.0e+000
 0.003551 0.002681 0.990217 0.003551
 0.991087 0.002681 0.002681 0.003551
 0.991087 0.002681 0.002681 0.003551
 0.818291 0.002681 0.089079 0.089949
 0.003551 0.002681 0.817143 0.176625
 0.695849 0.089079 0.038447 0.176625
 0.991087 0.002681 0.002681 0.003551
 0.904689 0.002681 0.002681 0.089949

MOTIF 5-SAAASAAT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 1.0e+000
 0.133969 0.292385 0.570948 0.002698
 0.796322 0.133308 0.002037 0.068333
 0.993229 0.002037 0.002037 0.002698
 0.966058 0.002037 0.002037 0.029869
 0.002698 0.543777 0.423656 0.029869
 0.714809 0.067672 0.187650 0.029869
 0.993229 0.002037 0.002037 0.002698
 0.002698 0.002037 0.002037 0.993229

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/CBX5.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_CBX5/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n10.farnam.hpc.yale.internal
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FINALTIME:	0.82 seconds
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