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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.284 C 0.216 G 0.216 T 0.284 

MOTIF 1-CTTTAGAT STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 1.0e+000
 0.005024 0.863333 0.003833 0.127809
 0.005024 0.003833 0.126619 0.864524
 0.005024 0.003833 0.003833 0.987310
 0.005024 0.003833 0.126619 0.864524
 0.864524 0.003833 0.126619 0.005024
 0.127809 0.126619 0.740548 0.005024
 0.741738 0.126619 0.126619 0.005024
 0.127809 0.003833 0.003833 0.864524

MOTIF 2-AATCAGCT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 7 P= 1.0e+000
 0.934873 0.019673 0.019673 0.025782
 0.934873 0.019673 0.019673 0.025782
 0.025782 0.019673 0.019673 0.934873
 0.025782 0.928764 0.019673 0.025782
 0.934873 0.019673 0.019673 0.025782
 0.025782 0.019673 0.928764 0.025782
 0.025782 0.928764 0.019673 0.025782
 0.025782 0.019673 0.019673 0.934873

MOTIF 3-TCAATAAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 7 P= 1.0e+000
 0.005711 0.004358 0.004358 0.985572
 0.005711 0.844625 0.004358 0.145305
 0.985572 0.004358 0.004358 0.005711
 0.985572 0.004358 0.004358 0.005711
 0.005711 0.004358 0.004358 0.985572
 0.845979 0.143952 0.004358 0.005711
 0.985572 0.004358 0.004358 0.005711
 0.845979 0.004358 0.143952 0.005711

MOTIF 4-AGAAAWAG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 6 P= 1.0e+000
 0.979934 0.006061 0.006061 0.007944
 0.007944 0.006061 0.978052 0.007944
 0.979934 0.006061 0.006061 0.007944
 0.785786 0.006061 0.006061 0.202092
 0.979934 0.006061 0.006061 0.007944
 0.591013 0.006061 0.006061 0.396865
 0.979934 0.006061 0.006061 0.007944
 0.007944 0.006061 0.978052 0.007944

MOTIF 5-CTGAGAAA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 6 P= 1.0e+000
 0.025782 0.928764 0.019673 0.025782
 0.025782 0.019673 0.019673 0.934873
 0.025782 0.019673 0.928764 0.025782
 0.934873 0.019673 0.019673 0.025782
 0.025782 0.019673 0.928764 0.025782
 0.934873 0.019673 0.019673 0.025782
 0.934873 0.019673 0.019673 0.025782
 0.934873 0.019673 0.019673 0.025782

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/CBX3.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_CBX3/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n10.farnam.hpc.yale.internal
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FINALTIME:	1.02 seconds
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