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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.223 C 0.277 G 0.277 T 0.223 

MOTIF 1-ACCACADN STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 63 P= 8.5e-002
 0.997076 0.001043 0.001043 0.000839
 0.000839 0.997280 0.001043 0.000839
 0.000839 0.997280 0.001043 0.000839
 0.808760 0.001043 0.189359 0.000839
 0.000839 0.997280 0.001043 0.000839
 0.997076 0.001043 0.001043 0.000839
 0.267457 0.001043 0.453574 0.277927
 0.226235 0.333946 0.193727 0.246092

MOTIF 2-CGCGAGAG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 5.0e-001
 0.003419 0.882578 0.110583 0.003419
 0.003419 0.004251 0.988910 0.003419
 0.003419 0.944892 0.004251 0.047438
 0.003419 0.004251 0.988910 0.003419
 0.775072 0.004251 0.217258 0.003419
 0.003419 0.004251 0.988910 0.003419
 0.988079 0.004251 0.004251 0.003419
 0.109752 0.262195 0.580616 0.047438

MOTIF 3-CCACTTCT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 1.0e+000
 0.001990 0.869761 0.064366 0.063882
 0.125774 0.622193 0.126258 0.125774
 0.683402 0.126258 0.188350 0.001990
 0.001990 0.931653 0.064366 0.001990
 0.063882 0.002474 0.002474 0.931169
 0.125974 0.064366 0.064366 0.745294
 0.063882 0.931653 0.002474 0.001990
 0.001990 0.188749 0.002474 0.806786

MOTIF 4-GCCTTTTA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 1.0e+000
 0.020264 0.025191 0.934282 0.020264
 0.020264 0.934282 0.025191 0.020264
 0.020264 0.934282 0.025191 0.020264
 0.020264 0.025191 0.025191 0.929355
 0.020264 0.025191 0.025191 0.929355
 0.020264 0.025191 0.025191 0.929355
 0.020264 0.025191 0.025191 0.929355
 0.929355 0.025191 0.025191 0.020264

MOTIF 5-CATCCTCT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 1.0e+000
 0.003169 0.891176 0.102486 0.003169
 0.791859 0.003940 0.102486 0.101716
 0.101716 0.003940 0.003940 0.890405
 0.003169 0.891176 0.102486 0.003169
 0.200262 0.595536 0.201033 0.003169
 0.101716 0.201350 0.003940 0.692995
 0.003169 0.891176 0.003940 0.101716
 0.003169 0.201350 0.003940 0.791542

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/CBFB.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_CBFB/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n09.farnam.hpc.yale.internal
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FINALTIME:	0.73 seconds
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