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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.177 C 0.323 G 0.323 T 0.177 

MOTIF 1-ATCTCGCG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 70 P= 5.0e-001
 0.552723 0.180258 0.181084 0.085936
 0.000841 0.094566 0.067329 0.837264
 0.000841 0.983167 0.001532 0.014460
 0.000841 0.067329 0.001532 0.930298
 0.066638 0.818676 0.067329 0.047358
 0.132434 0.015151 0.851574 0.000841
 0.000841 0.785778 0.080947 0.132434
 0.000841 0.001532 0.996786 0.000841

MOTIF 2-AGAAGACA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 9.5e-001
 0.987023 0.005091 0.005091 0.002795
 0.002795 0.005091 0.880000 0.112114
 0.877704 0.114411 0.005091 0.002795
 0.987023 0.005091 0.005091 0.002795
 0.002795 0.114411 0.880000 0.002795
 0.659064 0.114411 0.114411 0.112114
 0.112114 0.770680 0.114411 0.002795
 0.877704 0.005091 0.114411 0.002795

MOTIF 3-AGAAGRGT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 7 P= 1.0e+000
 0.983400 0.006513 0.006513 0.003575
 0.003575 0.006513 0.986337 0.003575
 0.703707 0.146359 0.146359 0.003575
 0.983400 0.006513 0.006513 0.003575
 0.003575 0.006513 0.986337 0.003575
 0.563411 0.146359 0.286655 0.003575
 0.003575 0.006513 0.986337 0.003575
 0.003575 0.006513 0.286655 0.703257

MOTIF 4-AGCCCCAC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 6 P= 1.0e+000
 0.925200 0.029345 0.029345 0.016109
 0.016109 0.029345 0.938436 0.016109
 0.016109 0.938436 0.029345 0.016109
 0.016109 0.938436 0.029345 0.016109
 0.016109 0.938436 0.029345 0.016109
 0.016109 0.938436 0.029345 0.016109
 0.925200 0.029345 0.029345 0.016109
 0.016109 0.938436 0.029345 0.016109

MOTIF 5-AGGACSCA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 6 P= 1.0e+000
 0.976925 0.009053 0.009053 0.004970
 0.004970 0.009053 0.981008 0.004970
 0.004970 0.009053 0.981008 0.004970
 0.782534 0.009053 0.203444 0.004970
 0.199361 0.786617 0.009053 0.004970
 0.004970 0.592226 0.397835 0.004970
 0.004970 0.786617 0.203444 0.004970
 0.976925 0.009053 0.009053 0.004970

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/BRCA1.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_BRCA1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n10.farnam.hpc.yale.internal
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FINALTIME:	0.74 seconds
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