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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.215 C 0.285 G 0.285 T 0.215 

MOTIF 1-AGTTGCCA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 9.5e-001
 0.630597 0.077711 0.163832 0.127861
 0.002316 0.003068 0.992299 0.002316
 0.002316 0.003068 0.003068 0.991548
 0.002316 0.077711 0.003068 0.916905
 0.076959 0.077711 0.693489 0.151842
 0.002316 0.917657 0.003068 0.076959
 0.002316 0.917657 0.003068 0.076959
 0.916905 0.003068 0.077711 0.002316

MOTIF 2-GASTKVTT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 1.0e+000
 0.001809 0.002397 0.993985 0.001809
 0.993398 0.002397 0.002397 0.001809
 0.176729 0.410918 0.235623 0.176729
 0.176729 0.002397 0.235623 0.585251
 0.176729 0.002397 0.294117 0.526757
 0.235036 0.469037 0.294117 0.001809
 0.001809 0.235623 0.002397 0.760171
 0.001809 0.002397 0.002397 0.993398

MOTIF 3-CATRGCAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 23 P= 1.0e+000
 0.001033 0.929968 0.034667 0.034332
 0.807031 0.090673 0.067965 0.034332
 0.067630 0.215049 0.048451 0.668870
 0.589308 0.001369 0.408290 0.001033
 0.057039 0.001369 0.940559 0.001033
 0.001033 0.916077 0.001369 0.081521
 0.815954 0.067965 0.101263 0.014818
 0.863037 0.067965 0.034667 0.034332

MOTIF 4-CCGCGGCG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 1.0e+000
 0.003057 0.989838 0.004049 0.003057
 0.003057 0.792522 0.201365 0.003057
 0.003057 0.004049 0.891180 0.101715
 0.101556 0.792839 0.102548 0.003057
 0.003057 0.004049 0.989838 0.003057
 0.003057 0.102548 0.792839 0.101556
 0.003057 0.989838 0.004049 0.003057
 0.101556 0.004049 0.891338 0.003057

MOTIF 5-GCCCCAGC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 8 P= 1.0e+000
 0.005048 0.006686 0.983218 0.005048
 0.005048 0.657882 0.169354 0.167716
 0.005048 0.983218 0.006686 0.005048
 0.167716 0.820550 0.006686 0.005048
 0.005048 0.983218 0.006686 0.005048
 0.981580 0.006686 0.006686 0.005048
 0.005048 0.006686 0.983218 0.005048
 0.167716 0.820550 0.006686 0.005048

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/BMI1.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_BMI1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n09.farnam.hpc.yale.internal
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FINALTIME:	0.87 seconds
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