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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.189 C 0.311 G 0.311 T 0.189 

MOTIF 1-CGTGACAG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 36 P= 7.0e-001
 0.001753 0.993620 0.002874 0.001753
 0.001753 0.067020 0.929474 0.001753
 0.065899 0.131373 0.067020 0.735708
 0.001753 0.002874 0.993620 0.001753
 0.836891 0.158482 0.002874 0.001753
 0.001753 0.993620 0.002874 0.001753
 0.735294 0.067020 0.002874 0.194811
 0.001753 0.002874 0.865122 0.130251

MOTIF 2-CACGTGCG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 7.0e-001
 0.017218 0.937327 0.028236 0.017218
 0.926309 0.028236 0.028236 0.017218
 0.017218 0.937327 0.028236 0.017218
 0.017218 0.028236 0.937327 0.017218
 0.017218 0.028236 0.028236 0.926309
 0.017218 0.028236 0.937327 0.017218
 0.017218 0.937327 0.028236 0.017218
 0.017218 0.028236 0.937327 0.017218

MOTIF 3-GACTCACG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 1.0e+000
 0.101175 0.004413 0.891721 0.002691
 0.593913 0.201698 0.004413 0.199976
 0.101175 0.891721 0.004413 0.002691
 0.002691 0.004413 0.004413 0.988483
 0.002691 0.990205 0.004413 0.002691
 0.988483 0.004413 0.004413 0.002691
 0.002691 0.990205 0.004413 0.002691
 0.101175 0.102897 0.793237 0.002691

MOTIF 4-GGTTRCAC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 6 P= 1.0e+000
 0.004166 0.006833 0.984834 0.004166
 0.004166 0.159313 0.679874 0.156646
 0.004166 0.069954 0.006833 0.919047
 0.004166 0.006833 0.006833 0.982168
 0.524728 0.006833 0.311793 0.156646
 0.004166 0.984834 0.006833 0.004166
 0.982168 0.006833 0.006833 0.004166
 0.004166 0.616753 0.222434 0.156646

MOTIF 5-CCHGCACG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 20 P= 1.0e+000
 0.001816 0.993389 0.002979 0.001816
 0.001816 0.860442 0.002979 0.134763
 0.401944 0.212620 0.136139 0.249297
 0.001816 0.002979 0.993389 0.001816
 0.068289 0.926916 0.002979 0.001816
 0.925753 0.002979 0.002979 0.068289
 0.001816 0.926916 0.002979 0.068289
 0.001816 0.002979 0.993389 0.001816

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/BHLHE40.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_BHLHE40/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n04.farnam.hpc.yale.internal
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FINALTIME:	0.61 seconds
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