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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.236 C 0.264 G 0.264 T 0.236 

MOTIF 1-ACACATGC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 33 P= 3.5e-001
 0.988515 0.003965 0.003965 0.003555
 0.107805 0.675842 0.212798 0.003555
 0.988515 0.003965 0.003965 0.003555
 0.003555 0.945769 0.047120 0.003555
 0.884266 0.108214 0.003965 0.003555
 0.003555 0.003965 0.003965 0.988515
 0.003555 0.003965 0.988925 0.003555
 0.003555 0.988925 0.003965 0.003555

MOTIF 2-ACYCAGAC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 25 P= 7.6e-001
 0.994067 0.002048 0.002048 0.001837
 0.001837 0.940422 0.002048 0.055693
 0.001837 0.648845 0.002048 0.347270
 0.163406 0.778853 0.002048 0.055693
 0.832498 0.002048 0.002048 0.163406
 0.001837 0.002048 0.702702 0.293413
 0.702490 0.002048 0.055904 0.239557
 0.001837 0.671140 0.271330 0.055693

MOTIF 3-ACTGATAC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 5 P= 1.0e+000
 0.930582 0.023964 0.023964 0.021491
 0.021491 0.933055 0.023964 0.021491
 0.021491 0.023964 0.023964 0.930582
 0.021491 0.023964 0.933055 0.021491
 0.930582 0.023964 0.023964 0.021491
 0.021491 0.023964 0.023964 0.930582
 0.930582 0.023964 0.023964 0.021491
 0.021491 0.933055 0.023964 0.021491

MOTIF 4-AAGCCTGG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 1.0e+000
 0.693407 0.102327 0.102327 0.101940
 0.890562 0.003749 0.102327 0.003362
 0.200518 0.102327 0.595216 0.101940
 0.101940 0.792371 0.102327 0.003362
 0.101940 0.792371 0.102327 0.003362
 0.003362 0.102327 0.003749 0.890562
 0.003362 0.102327 0.693794 0.200518
 0.003362 0.102327 0.693794 0.200518

MOTIF 5-ATATGTGC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 5 P= 1.0e+000
 0.930582 0.023964 0.023964 0.021491
 0.021491 0.023964 0.023964 0.930582
 0.930582 0.023964 0.023964 0.021491
 0.021491 0.023964 0.023964 0.930582
 0.021491 0.023964 0.933055 0.021491
 0.021491 0.023964 0.023964 0.930582
 0.021491 0.023964 0.933055 0.021491
 0.021491 0.933055 0.023964 0.021491

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/BCL3.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_BCL3/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n09.farnam.hpc.yale.internal
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FINALTIME:	0.56 seconds
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