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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.27 C 0.23 G 0.23 T 0.27 

MOTIF 1-GAGTCATA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 33 P= 1.7e-001
 0.071612 0.084609 0.700091 0.143688
 0.853549 0.001381 0.101836 0.043234
 0.001620 0.084609 0.828923 0.084848
 0.001620 0.001381 0.001381 0.995617
 0.143688 0.853310 0.001381 0.001620
 0.995617 0.001381 0.001381 0.001620
 0.018847 0.084743 0.084609 0.811801
 0.535706 0.167970 0.060222 0.236102

MOTIF 2-CBCMCCCA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 7 P= 5.0e-001
 0.006334 0.981932 0.005400 0.006334
 0.006334 0.331259 0.330736 0.331670
 0.006334 0.981932 0.005400 0.006334
 0.657530 0.330736 0.005400 0.006334
 0.006334 0.981932 0.005400 0.006334
 0.006334 0.981932 0.005400 0.006334
 0.006334 0.981932 0.005400 0.006334
 0.982866 0.005400 0.005400 0.006334

MOTIF 3-GGAASTGA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 5.0e-001
 0.003830 0.003265 0.989075 0.003830
 0.003830 0.003265 0.989075 0.003830
 0.989640 0.003265 0.003265 0.003830
 0.989640 0.003265 0.003265 0.003830
 0.003830 0.594687 0.397653 0.003830
 0.102189 0.003265 0.003265 0.891281
 0.003830 0.003265 0.989075 0.003830
 0.694246 0.003265 0.298659 0.003830

MOTIF 4-CACAGCMC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 1.0e+000
 0.102384 0.890508 0.003271 0.003837
 0.891073 0.003271 0.101818 0.003837
 0.003837 0.989054 0.003271 0.003837
 0.693980 0.200365 0.101818 0.003837
 0.200930 0.101818 0.693414 0.003837
 0.003837 0.989054 0.003271 0.003837
 0.595117 0.299228 0.101818 0.003837
 0.003837 0.989054 0.003271 0.003837

MOTIF 5-AACCACAA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 41 P= 1.0e+000
 0.665213 0.000859 0.115089 0.218838
 0.820572 0.037452 0.140969 0.001008
 0.089359 0.831137 0.078497 0.001008
 0.001008 0.908774 0.000859 0.089359
 0.753481 0.104460 0.104460 0.037600
 0.110868 0.731989 0.078497 0.078646
 0.841998 0.026738 0.000859 0.130404
 0.753564 0.026738 0.052618 0.167080

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/BCL11A.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_BCL11A/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n09.farnam.hpc.yale.internal
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FINALTIME:	0.68 seconds
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