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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.29 C 0.21 G 0.21 T 0.29 

MOTIF 1-CAGTCATA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 5.0e-001
 0.078909 0.688400 0.002297 0.230394
 0.992239 0.002297 0.002297 0.003167
 0.003167 0.002297 0.991370 0.003167
 0.003167 0.078039 0.002297 0.916497
 0.078909 0.915627 0.002297 0.003167
 0.764279 0.002297 0.002297 0.231127
 0.003167 0.002297 0.002297 0.992239
 0.992239 0.002297 0.002297 0.003167

MOTIF 2-ATGAGTCA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 56 P= 8.3e-001
 0.755624 0.001059 0.001059 0.242258
 0.008140 0.001059 0.015517 0.975284
 0.001460 0.015517 0.967105 0.015918
 0.926571 0.035984 0.001059 0.036385
 0.040622 0.001059 0.921934 0.036385
 0.001460 0.001059 0.001059 0.996422
 0.233165 0.764315 0.001059 0.001460
 0.877076 0.105947 0.001059 0.015918

MOTIF 3-CATTTCCA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 22 P= 1.0e+000
 0.002023 0.829155 0.021496 0.147326
 0.607827 0.146615 0.146770 0.098788
 0.002023 0.146692 0.049850 0.801435
 0.002023 0.049850 0.098232 0.849895
 0.022052 0.001467 0.001467 0.975014
 0.050405 0.897722 0.049850 0.002023
 0.083400 0.767963 0.098232 0.050405
 0.781406 0.001467 0.098232 0.118894

MOTIF 4-ACTTTCAM STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 1.0e+000
 0.780806 0.002143 0.214098 0.002954
 0.002954 0.991950 0.002143 0.002954
 0.002954 0.072794 0.002143 0.922109
 0.144257 0.002143 0.002143 0.851458
 0.002954 0.002143 0.072794 0.922109
 0.002954 0.991950 0.002143 0.002954
 0.639503 0.143446 0.214098 0.002954
 0.426864 0.497388 0.002143 0.073606

MOTIF 5-AGAGGAAR STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 7 P= 1.0e+000
 0.980095 0.005891 0.005891 0.008122
 0.008122 0.005891 0.977864 0.008122
 0.785826 0.005891 0.200161 0.008122
 0.008122 0.005891 0.977864 0.008122
 0.008122 0.005891 0.977864 0.008122
 0.980095 0.005891 0.005891 0.008122
 0.785826 0.005891 0.200161 0.008122
 0.397286 0.005891 0.588700 0.008122

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/BATF.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_BATF/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n04.farnam.hpc.yale.internal
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FINALTIME:	0.66 seconds
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