********************************************************************************
STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
********************************************************************************
MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

********************************************************************************


********************************************************************************
REFERENCE
********************************************************************************
If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
********************************************************************************


ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.228 C 0.272 G 0.272 T 0.228 

MOTIF 1-ACGCGAGC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 5.0e-001
 0.890550 0.003862 0.102346 0.003242
 0.003242 0.891170 0.102346 0.003242
 0.003242 0.102346 0.891170 0.003242
 0.003242 0.989654 0.003862 0.003242
 0.101726 0.102346 0.694202 0.101726
 0.692630 0.003862 0.300266 0.003242
 0.003242 0.102346 0.891170 0.003242
 0.003242 0.792686 0.200830 0.003242

MOTIF 2-ASTCAGCA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 47 P= 9.1e-001
 0.908594 0.001698 0.088283 0.001425
 0.001425 0.604417 0.392733 0.001425
 0.001425 0.001698 0.001698 0.995179
 0.044718 0.952159 0.001698 0.001425
 0.977258 0.001698 0.019619 0.001425
 0.001425 0.088283 0.908867 0.001425
 0.088010 0.908867 0.001698 0.001425
 0.951887 0.044990 0.001698 0.001425

MOTIF 3-CATGCTCM STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 10 P= 1.0e+000
 0.004039 0.987111 0.004811 0.004039
 0.986339 0.004811 0.004811 0.004039
 0.004039 0.004811 0.004811 0.986339
 0.126728 0.004811 0.618650 0.249811
 0.004039 0.864422 0.004811 0.126728
 0.004039 0.004811 0.004811 0.986339
 0.126728 0.864422 0.004811 0.004039
 0.372106 0.619044 0.004811 0.004039

MOTIF 4-CMCGGCWC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 1.0e+000
 0.003243 0.989650 0.003863 0.003243
 0.397622 0.595272 0.003863 0.003243
 0.003243 0.989650 0.003863 0.003243
 0.003243 0.003863 0.989650 0.003243
 0.003243 0.003863 0.989650 0.003243
 0.200591 0.792303 0.003863 0.003243
 0.496137 0.102378 0.102378 0.299106
 0.101759 0.891135 0.003863 0.003243

MOTIF 5-AAACAAAG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 8 P= 1.0e+000
 0.800150 0.098367 0.003712 0.097771
 0.855621 0.003712 0.003712 0.136955
 0.799846 0.003712 0.193326 0.003116
 0.003116 0.895401 0.098367 0.003116
 0.950276 0.042896 0.003712 0.003116
 0.800150 0.003712 0.098367 0.097771
 0.800150 0.003712 0.003712 0.192426
 0.192731 0.003712 0.800441 0.003116

********************************************************************************
Stopped because maximum number of motifs (5) reached.
********************************************************************************
COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/BACH1.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_BACH1/ --w 8 --nmotifs 5 --verbosity 1
********************************************************************************
CPU:		c17n10.farnam.hpc.yale.internal
********************************************************************************
FINALTIME:	0.90 seconds
********************************************************************************