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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.261 C 0.239 G 0.239 T 0.261 

MOTIF 1-TGAYRTCA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 5.0e-001
 0.002520 0.002308 0.002308 0.992864
 0.002520 0.002308 0.936365 0.058807
 0.891981 0.002308 0.002308 0.103403
 0.035986 0.513066 0.035773 0.415175
 0.415175 0.035773 0.513066 0.035986
 0.103403 0.002308 0.002308 0.891981
 0.058807 0.936365 0.002308 0.002520
 0.992864 0.002308 0.002308 0.002520

MOTIF 2-CACTCCAA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 6 P= 1.0e+000
 0.004622 0.741050 0.126969 0.127359
 0.986914 0.004232 0.004232 0.004622
 0.127359 0.863788 0.004232 0.004622
 0.004622 0.126969 0.126969 0.741440
 0.004622 0.986525 0.004232 0.004622
 0.127359 0.741050 0.126969 0.004622
 0.986914 0.004232 0.004232 0.004622
 0.741440 0.249707 0.004232 0.004622

MOTIF 3-CGCCCGGA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 6 P= 1.0e+000
 0.094543 0.625546 0.185367 0.094543
 0.094543 0.094254 0.807771 0.003431
 0.003431 0.898884 0.094254 0.003431
 0.041148 0.770054 0.185367 0.003431
 0.003431 0.952279 0.040859 0.003431
 0.041148 0.185367 0.770054 0.003431
 0.003431 0.185660 0.807478 0.003431
 0.678937 0.094254 0.185660 0.041148

MOTIF 4-GCATGACV STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 6 P= 1.0e+000
 0.007320 0.006703 0.978658 0.007320
 0.007320 0.978658 0.006703 0.007320
 0.979275 0.006703 0.006703 0.007320
 0.007320 0.006703 0.201094 0.784884
 0.007320 0.201094 0.784267 0.007320
 0.979275 0.006703 0.006703 0.007320
 0.007320 0.978658 0.006703 0.007320
 0.396102 0.201094 0.395485 0.007320

MOTIF 5-AGWWGGAA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 1.0e+000
 0.928122 0.067192 0.002240 0.002446
 0.002446 0.002240 0.992869 0.002446
 0.576262 0.002240 0.002240 0.419259
 0.419468 0.002240 0.002240 0.576053
 0.251289 0.132145 0.614120 0.002446
 0.262465 0.002240 0.614120 0.121175
 0.798008 0.002240 0.197307 0.002446
 0.993075 0.002240 0.002240 0.002446

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/ATF7.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_ATF7/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n09.farnam.hpc.yale.internal
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FINALTIME:	0.70 seconds
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