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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.28 C 0.22 G 0.22 T 0.28 

MOTIF 1-TATGTCAW STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 7.6e-001
 0.003620 0.002851 0.092557 0.900972
 0.990678 0.002851 0.002851 0.003620
 0.003620 0.002851 0.002851 0.990678
 0.183032 0.092557 0.720790 0.003620
 0.003620 0.002851 0.002851 0.990678
 0.183032 0.631084 0.002851 0.183032
 0.900972 0.002851 0.002851 0.093326
 0.452151 0.182264 0.092557 0.273027

MOTIF 2-ATTGCAGA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 1.0e+000
 0.900972 0.092557 0.002851 0.003620
 0.003620 0.092557 0.002851 0.900972
 0.183032 0.002851 0.002851 0.811265
 0.003620 0.092557 0.900203 0.003620
 0.003620 0.810497 0.092557 0.093326
 0.900972 0.002851 0.002851 0.093326
 0.003620 0.002851 0.900203 0.093326
 0.811265 0.092557 0.092557 0.003620

MOTIF 3-GTGACTTC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 10 P= 1.0e+000
 0.025427 0.020027 0.929118 0.025427
 0.025427 0.020027 0.020027 0.934518
 0.025427 0.020027 0.929118 0.025427
 0.934518 0.020027 0.020027 0.025427
 0.025427 0.929118 0.020027 0.025427
 0.025427 0.020027 0.020027 0.934518
 0.025427 0.020027 0.020027 0.934518
 0.025427 0.929118 0.020027 0.025427

MOTIF 4-AGGGATGA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 10 P= 1.0e+000
 0.618789 0.003899 0.249672 0.127640
 0.127640 0.003899 0.863510 0.004951
 0.127640 0.003899 0.863510 0.004951
 0.004951 0.126588 0.863510 0.004951
 0.987251 0.003899 0.003899 0.004951
 0.004951 0.003899 0.003899 0.987251
 0.004951 0.003899 0.986199 0.004951
 0.987251 0.003899 0.003899 0.004951

MOTIF 5-AAATAAAA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 10 P= 1.0e+000
 0.934518 0.020027 0.020027 0.025427
 0.934518 0.020027 0.020027 0.025427
 0.934518 0.020027 0.020027 0.025427
 0.025427 0.020027 0.020027 0.934518
 0.934518 0.020027 0.020027 0.025427
 0.934518 0.020027 0.020027 0.025427
 0.934518 0.020027 0.020027 0.025427
 0.934518 0.020027 0.020027 0.025427

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/ATF2.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_ATF2/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n04.farnam.hpc.yale.internal
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FINALTIME:	1.27 seconds
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