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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.205 C 0.295 G 0.295 T 0.205 

MOTIF 1-CCCAGCCC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 2.4e-001
 0.018655 0.935891 0.026800 0.018655
 0.018655 0.935891 0.026800 0.018655
 0.018655 0.935891 0.026800 0.018655
 0.927745 0.026800 0.026800 0.018655
 0.018655 0.026800 0.935891 0.018655
 0.018655 0.935891 0.026800 0.018655
 0.018655 0.935891 0.026800 0.018655
 0.018655 0.935891 0.026800 0.018655

MOTIF 2-CGAGGCTG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 8 P= 1.0e+000
 0.144116 0.845787 0.005953 0.004144
 0.004144 0.005953 0.985759 0.004144
 0.843978 0.005953 0.005953 0.144116
 0.004144 0.005953 0.985759 0.004144
 0.004144 0.005953 0.985759 0.004144
 0.144116 0.845787 0.005953 0.004144
 0.004144 0.145925 0.145925 0.704005
 0.004144 0.145925 0.845787 0.004144

MOTIF 3-CTCCCGGC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 1.0e+000
 0.018655 0.935891 0.026800 0.018655
 0.018655 0.026800 0.026800 0.927745
 0.018655 0.935891 0.026800 0.018655
 0.018655 0.935891 0.026800 0.018655
 0.018655 0.935891 0.026800 0.018655
 0.018655 0.026800 0.935891 0.018655
 0.018655 0.026800 0.935891 0.018655
 0.018655 0.935891 0.026800 0.018655

MOTIF 4-GGCCGCCA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 6 P= 1.0e+000
 0.018655 0.026800 0.935891 0.018655
 0.018655 0.026800 0.935891 0.018655
 0.018655 0.935891 0.026800 0.018655
 0.018655 0.935891 0.026800 0.018655
 0.018655 0.026800 0.935891 0.018655
 0.018655 0.935891 0.026800 0.018655
 0.018655 0.935891 0.026800 0.018655
 0.927745 0.026800 0.026800 0.018655

MOTIF 5-WCCYAAAS STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 1.0e+000
 0.540894 0.003815 0.003815 0.451476
 0.002656 0.990873 0.003815 0.002656
 0.002656 0.901167 0.003815 0.092362
 0.092362 0.542342 0.093522 0.271775
 0.989714 0.003815 0.003815 0.002656
 0.810301 0.183228 0.003815 0.002656
 0.989714 0.003815 0.003815 0.002656
 0.002656 0.452347 0.452635 0.092362

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/ASH2L.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_ASH2L/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n09.farnam.hpc.yale.internal
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FINALTIME:	0.68 seconds
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