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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.249 C 0.251 G 0.251 T 0.249 

MOTIF 1-CAGGAAGT STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 1.0e+000
 0.002862 0.911831 0.082446 0.002862
 0.832247 0.162014 0.002878 0.002862
 0.002862 0.082446 0.911831 0.002862
 0.082430 0.082446 0.832263 0.002862
 0.593031 0.241837 0.162270 0.002862
 0.911815 0.002878 0.082446 0.002862
 0.035800 0.002878 0.958460 0.002862
 0.002862 0.002878 0.082446 0.911815

MOTIF 2-AGTGAGAC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 1.0e+000
 0.823947 0.003020 0.086525 0.086508
 0.003003 0.086525 0.907469 0.003003
 0.037571 0.121093 0.003020 0.838316
 0.003003 0.003020 0.823964 0.170012
 0.990956 0.003020 0.003020 0.003003
 0.170281 0.086525 0.740191 0.003003
 0.907452 0.086525 0.003020 0.003003
 0.003003 0.740460 0.086525 0.170012

MOTIF 3-RCACGCCA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 1.0e+000
 0.659969 0.003953 0.332148 0.003930
 0.003930 0.988187 0.003953 0.003930
 0.988165 0.003953 0.003953 0.003930
 0.222493 0.660343 0.113234 0.003930
 0.003930 0.003953 0.988187 0.003930
 0.003930 0.878905 0.113234 0.003930
 0.113212 0.878905 0.003953 0.003930
 0.988165 0.003953 0.003953 0.003930

MOTIF 4-CAGGTCCC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 1.0e+000
 0.108275 0.884186 0.003780 0.003759
 0.988681 0.003780 0.003780 0.003759
 0.003759 0.108296 0.779670 0.108275
 0.108275 0.003780 0.736403 0.151541
 0.003759 0.003780 0.108296 0.884165
 0.003759 0.988702 0.003780 0.003759
 0.108275 0.779670 0.108296 0.003759
 0.003759 0.988702 0.003780 0.003759

MOTIF 5-GCWAATCA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 1.0e+000
 0.256283 0.054597 0.687225 0.001895
 0.159968 0.656347 0.001906 0.181780
 0.603645 0.001906 0.001906 0.392543
 0.994293 0.001906 0.001906 0.001895
 0.836221 0.001906 0.159978 0.001895
 0.001895 0.001906 0.287342 0.708858
 0.076398 0.919801 0.001906 0.001895
 0.941603 0.001906 0.054597 0.001895

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/ARNT.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_ARNT/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n09.farnam.hpc.yale.internal
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FINALTIME:	0.85 seconds
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