********************************************************************************
STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
********************************************************************************
MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

********************************************************************************


********************************************************************************
REFERENCE
********************************************************************************
If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
********************************************************************************


ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.316 C 0.184 G 0.184 T 0.316 

MOTIF 1-CTATTAAT STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 8 P= 5.0e-001
 0.006023 0.984437 0.003516 0.006023
 0.270948 0.003516 0.003516 0.722019
 0.986944 0.003516 0.003516 0.006023
 0.138273 0.003516 0.003516 0.854694
 0.006023 0.003516 0.135766 0.854694
 0.799947 0.135766 0.058263 0.006023
 0.854694 0.135766 0.003516 0.006023
 0.006023 0.003516 0.003516 0.986944

MOTIF 2-ACATTCTG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 8 P= 1.0e+000
 0.937791 0.016755 0.016755 0.028700
 0.028700 0.925845 0.016755 0.028700
 0.937791 0.016755 0.016755 0.028700
 0.028700 0.016755 0.016755 0.937791
 0.028700 0.016755 0.016755 0.937791
 0.028700 0.925845 0.016755 0.028700
 0.028700 0.016755 0.016755 0.937791
 0.028700 0.016755 0.925845 0.028700

MOTIF 3-AATTAAGC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 7 P= 1.0e+000
 0.986194 0.003718 0.003718 0.006369
 0.986194 0.003718 0.003718 0.006369
 0.006369 0.003718 0.003718 0.986194
 0.006369 0.003718 0.003718 0.986194
 0.846347 0.003718 0.003718 0.146216
 0.846347 0.003718 0.003718 0.146216
 0.006369 0.003718 0.703400 0.286512
 0.006369 0.843696 0.003718 0.146216

MOTIF 4-TTARAAAR STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 21 P= 1.0e+000
 0.001968 0.001149 0.001149 0.995734
 0.185261 0.001149 0.001149 0.812442
 0.794554 0.019036 0.001149 0.185261
 0.304647 0.001149 0.483621 0.210583
 0.952524 0.001149 0.001149 0.045178
 0.769231 0.105456 0.123344 0.001968
 0.736404 0.260479 0.001149 0.001968
 0.491945 0.001149 0.504938 0.001968

MOTIF 5-ACCACAGT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 1.0e+000
 0.804689 0.024496 0.112682 0.058134
 0.058134 0.914838 0.024496 0.002532
 0.025550 0.859236 0.001478 0.113736
 0.883308 0.001478 0.057080 0.058134
 0.113736 0.771050 0.057080 0.058134
 0.938909 0.001478 0.001478 0.058134
 0.113736 0.001478 0.714911 0.169875
 0.113914 0.001478 0.112682 0.771926

********************************************************************************
Stopped because maximum number of motifs (5) reached.
********************************************************************************
COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/ARID3A.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_ARID3A/ --w 8 --nmotifs 5 --verbosity 1
********************************************************************************
CPU:		c22n04.farnam.hpc.yale.internal
********************************************************************************
FINALTIME:	0.68 seconds
********************************************************************************