******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/ZZZ3.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3:138328382-138328402 1.0000 20 chr4:155338415-155338435 1.0000 20 chr3:114173037-114173057 1.0000 20 chr10:110654335-11065435 1.0000 20 chr4:160025674-160025694 1.0000 20 chr7:30560509-30560529 1.0000 20 chr15:60691233-60691253 1.0000 20 chr6:37665892-37665912 1.0000 20 chr15:70308489-70308509 1.0000 20 chr1:97991333-97991353 1.0000 20 chr2:65529253-65529273 1.0000 20 chr16:46725842-46725862 1.0000 20 chr18:11143685-11143705 1.0000 20 chr11:64472119-64472139 1.0000 20 chr15:37390612-37390632 1.0000 20 chr8:81076274-81076294 1.0000 20 chrX:70474920-70474940 1.0000 20 chr10:91053431-91053451 1.0000 20 chr1:161706331-161706351 1.0000 20 chr14:68623173-68623193 1.0000 20 chr14:101083790-10108381 1.0000 20 chr11:9696946-9696966 1.0000 20 chr4:144299792-144299812 1.0000 20 chr20:7999172-7999192 1.0000 20 chr4:79550439-79550459 1.0000 20 chr1:89487515-89487535 1.0000 20 chr7:44885697-44885717 1.0000 20 chr2:65832123-65832143 1.0000 20 chr16:27296466-27296486 1.0000 20 chr14:71347854-71347874 1.0000 20 chr8:67434047-67434067 1.0000 20 chrX:40653399-40653419 1.0000 20 chr2:158271108-158271128 1.0000 20 chr11:131760072-13176009 1.0000 20 chr9:7052912-7052932 1.0000 20 chr17:28498960-28498980 1.0000 20 chr2:175464525-175464545 1.0000 20 chr7:29235228-29235248 1.0000 20 chr9:21990613-21990633 1.0000 20 chr10:60818453-60818473 1.0000 20 chr2:198920020-198920040 1.0000 20 chrX:106985623-106985643 1.0000 20 chr5:110867601-110867621 1.0000 20 chr6:18327755-18327775 1.0000 20 chrX:139844384-139844404 1.0000 20 chr17:46755332-46755352 1.0000 20 chr4:164165362-164165382 1.0000 20 chr9:109626290-109626310 1.0000 20 chr12:66218547-66218567 1.0000 20 chr9:100926019-100926039 1.0000 20 chr9:23850726-23850746 1.0000 20 chr1:208260312-208260332 1.0000 20 chr2:43274006-43274026 1.0000 20 chr14:22926177-22926197 1.0000 20 chr1:59482280-59482300 1.0000 20 chr11:128761333-12876135 1.0000 20 chr8:38741332-38741352 1.0000 20 chr13:49067420-49067440 1.0000 20 chr11:62421295-62421315 1.0000 20 chrX:23760330-23760350 1.0000 20 chr8:76320507-76320527 1.0000 20 chr10:29798275-29798295 1.0000 20 chr4:1874327-1874347 1.0000 20 chr3:57029669-57029689 1.0000 20 chr3:136993236-136993256 1.0000 20 chr7:150452699-150452719 1.0000 20 chr18:32993014-32993034 1.0000 20 chr10:18647446-18647466 1.0000 20 chr1:31807157-31807177 1.0000 20 chr3:105473363-105473383 1.0000 20 chr3:43275221-43275241 1.0000 20 chr7:83824364-83824384 1.0000 20 chrX:129086774-129086794 1.0000 20 chr3:31258043-31258063 1.0000 20 chr6:14877095-14877115 1.0000 20 chr12:2034043-2034063 1.0000 20 chr13:24845131-24845151 1.0000 20 chr20:35095333-35095353 1.0000 20 chr11:128284444-12828446 1.0000 20 chr1:111162716-111162736 1.0000 20 chr3:164914713-164914733 1.0000 20 chr12:46519285-46519305 1.0000 20 chr16:46864184-46864204 1.0000 20 chrX:114828932-114828952 1.0000 20 chr8:73330651-73330671 1.0000 20 chr20:61147904-61147924 1.0000 20 chr1:33921516-33921536 1.0000 20 chr12:49616499-49616519 1.0000 20 chr16:9133232-9133252 1.0000 20 chr2:203520435-203520455 1.0000 20 chr8:71072906-71072926 1.0000 20 chr2:74517788-74517808 1.0000 20 chr6:75917905-75917925 1.0000 20 chr9:108645899-108645919 1.0000 20 chr10:30061953-30061973 1.0000 20 chr7:74058217-74058237 1.0000 20 chr21:25485921-25485941 1.0000 20 chr4:129474186-129474206 1.0000 20 chr5:17217179-17217199 1.0000 20 chr6:157177778-157177798 1.0000 20 chr1:180992224-180992244 1.0000 20 chr1:109656125-109656145 1.0000 20 chr5:150439337-150439357 1.0000 20 chr8:58136229-58136249 1.0000 20 chr11:128563865-12856388 1.0000 20 chr3:14726938-14726958 1.0000 20 chr1:226899151-226899171 1.0000 20 chr5:38832135-38832155 1.0000 20 chr17:38601216-38601236 1.0000 20 chr10:44503794-44503814 1.0000 20 chr13:74861534-74861554 1.0000 20 chr1:161067421-161067441 1.0000 20 chr18:58756177-58756197 1.0000 20 chr7:43665330-43665350 1.0000 20 chr15:44580686-44580706 1.0000 20 chrX:80065171-80065191 1.0000 20 chr1:156613425-156613445 1.0000 20 chr11:107734980-10773500 1.0000 20 chr9:4600480-4600500 1.0000 20 chr4:124697670-124697690 1.0000 20 chr12:72092438-72092458 1.0000 20 chr8:82754785-82754805 1.0000 20 chr5:102172567-102172587 1.0000 20 chr6:42230242-42230262 1.0000 20 chr1:207997393-207997413 1.0000 20 chr3:105087085-105087105 1.0000 20 chr2:85960068-85960088 1.0000 20 chr10:100538088-10053810 1.0000 20 chr2:145268269-145268289 1.0000 20 chr12:90052378-90052398 1.0000 20 chr5:159953909-159953929 1.0000 20 chr2:175459382-175459402 1.0000 20 chr1:89529914-89529934 1.0000 20 chr1:156786877-156786897 1.0000 20 chr5:158477171-158477191 1.0000 20 chrX:78212923-78212943 1.0000 20 chr21:47066046-47066066 1.0000 20 chrX:122317975-122317995 1.0000 20 chr1:199498644-199498664 1.0000 20 chr18:29665347-29665367 1.0000 20 chr3:57051031-57051051 1.0000 20 chrX:13044212-13044232 1.0000 20 chr10:63383642-63383662 1.0000 20 chr6:31509630-31509650 1.0000 20 chr21:34144268-34144288 1.0000 20 chr19:597665-597685 1.0000 20 chr5:10508960-10508980 1.0000 20 chr5:92917539-92917559 1.0000 20 chr18:29665546-29665566 1.0000 20 chr3:165443325-165443345 1.0000 20 chr17:65693405-65693425 1.0000 20 chr1:92921078-92921098 1.0000 20 chr19:46172232-46172252 1.0000 20 chr15:89956091-89956111 1.0000 20 chr20:62362271-62362291 1.0000 20 chr6:115035072-115035092 1.0000 20 chr5:52152522-52152542 1.0000 20 chr4:54973607-54973627 1.0000 20 chr14:60798038-60798058 1.0000 20 chrX:114849834-114849854 1.0000 20 chr8:129325555-129325575 1.0000 20 chr14:98604152-98604172 1.0000 20 chr2:221996859-221996879 1.0000 20 chr6:12104599-12104619 1.0000 20 chr19:55166502-55166522 1.0000 20 chr3:121749478-121749498 1.0000 20 chr20:57551776-57551796 1.0000 20 chr1:155214641-155214661 1.0000 20 chr17:5153173-5153193 1.0000 20 chr5:95664154-95664174 1.0000 20 chr17:57287331-57287351 1.0000 20 chr1:184756072-184756092 1.0000 20 chr15:49714340-49714360 1.0000 20 chr8:82783064-82783084 1.0000 20 chr20:2451291-2451311 1.0000 20 chr6:143141435-143141455 1.0000 20 chr10:114206865-11420688 1.0000 20 chr10:71892890-71892910 1.0000 20 chr19:41816334-41816354 1.0000 20 chr12:95158051-95158071 1.0000 20 chrX:9979704-9979724 1.0000 20 chr22:27044851-27044871 1.0000 20 chr8:121457435-121457455 1.0000 20 chr13:46774570-46774590 1.0000 20 chr12:112847278-11284729 1.0000 20 chr20:43239136-43239156 1.0000 20 chr9:93862407-93862427 1.0000 20 chr4:54358640-54358660 1.0000 20 chr11:72436301-72436321 1.0000 20 chr1:44679076-44679096 1.0000 20 chr17:47946254-47946274 1.0000 20 chr2:3622772-3622792 1.0000 20 chr2:224822138-224822158 1.0000 20 chr7:137530877-137530897 1.0000 20 chr15:68222758-68222778 1.0000 20 chr2:198238768-198238788 1.0000 20 chr5:38832339-38832359 1.0000 20 chr15:89748421-89748441 1.0000 20 chrX:119443539-119443559 1.0000 20 chr22:33599058-33599078 1.0000 20 chr11:64863582-64863602 1.0000 20 chr2:27886703-27886723 1.0000 20 chr11:82393547-82393567 1.0000 20 chr6:18749785-18749805 1.0000 20 chr5:19935911-19935931 1.0000 20 chr13:28555146-28555166 1.0000 20 chr12:109915317-10991533 1.0000 20 chr20:61732933-61732953 1.0000 20 chr10:53459425-53459445 1.0000 20 chr8:101844764-101844784 1.0000 20 chr11:111944836-11194485 1.0000 20 chr12:93579491-93579511 1.0000 20 chr1:147012908-147012928 1.0000 20 chr4:119811901-119811921 1.0000 20 chr1:31538384-31538404 1.0000 20 chr15:49447920-49447940 1.0000 20 chr19:51523451-51523471 1.0000 20 chr15:37392419-37392439 1.0000 20 chr19:50083973-50083993 1.0000 20 chr4:106629886-106629906 1.0000 20 chr2:201936644-201936664 1.0000 20 chr17:72292532-72292552 1.0000 20 chr2:64927706-64927726 1.0000 20 chr10:49509620-49509640 1.0000 20 chr19:1383834-1383854 1.0000 20 chr16:58970765-58970785 1.0000 20 chr19:47924174-47924194 1.0000 20 chr1:63989021-63989041 1.0000 20 chr20:30434229-30434249 1.0000 20 chr4:106819501-106819521 1.0000 20 chr19:45186323-45186343 1.0000 20 chr5:64071886-64071906 1.0000 20 chrX:119149521-119149541 1.0000 20 chr3:157824336-157824356 1.0000 20 chr19:14385677-14385697 1.0000 20 chr12:1116610-1116630 1.0000 20 chr20:34824318-34824338 1.0000 20 chr5:33836035-33836055 1.0000 20 chr17:80231452-80231472 1.0000 20 chr8:120082681-120082701 1.0000 20 chr4:113783025-113783045 1.0000 20 chr20:52489677-52489697 1.0000 20 chr5:74062977-74062997 1.0000 20 chr3:197677165-197677185 1.0000 20 chr1:37656379-37656399 1.0000 20 chrX:135755985-135756005 1.0000 20 chrX:1008410-1008430 1.0000 20 chr3:12882925-12882945 1.0000 20 chr16:17347729-17347749 1.0000 20 chrX:71792880-71792900 1.0000 20 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/GM12878/inference_raw/MEME/RankLinear0.6_10_ZZZ3/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/ZZZ3.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 5000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 5000 norand= no csites= 1000 Letter frequencies in dataset: A 0.263 C 0.226 G 0.282 T 0.228 Background letter frequencies (from file dataset with add-one prior applied): A 0.263 C 0.226 G 0.282 T 0.228 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF AGAGAGAG MEME-1 width = 8 sites = 89 llr = 865 E-value = 7.4e-188 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGAGAGAG MEME-1 Description -------------------------------------------------------------------------------- Simplified A a:9:a:a: pos.-specific C :::::::: probability G :a1a:a:a matrix T :::::::: bits 2.1 1.9 * **** 1.7 * **** 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (14.0 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGAGAGAG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGAGAG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr19:14385677-14385697 4 3.03e-05 gag agagagag agagagaga chr5:64071886-64071906 13 3.03e-05 GTGgagcgag agagagag chr16:58970765-58970785 11 3.03e-05 agcaagagag agagagag ag chr19:51523451-51523471 12 3.03e-05 CCagagagag agagagag a chr1:147012908-147012928 1 3.03e-05 . agagagag acagagagag chr11:82393547-82393567 6 3.03e-05 gagac agagagag agagaga chr22:27044851-27044871 3 3.03e-05 aa agagagag agagagtgag chr12:95158051-95158071 10 3.03e-05 gagagacgg agagagag aga chr10:71892890-71892910 7 3.03e-05 agagag agagagag agagag chr17:5153173-5153193 13 3.03e-05 gagaaagaga agagagag chr1:155214641-155214661 1 3.03e-05 . agagagag agagagagag chr4:54973607-54973627 4 3.03e-05 gag agagagag agagagaga chr5:52152522-52152542 9 3.03e-05 agagagag agagagag agag chr6:115035072-115035092 1 3.03e-05 . agagagag agagagagag chr15:89956091-89956111 4 3.03e-05 gag agagagag agagagaga chr1:92921078-92921098 2 3.03e-05 g agagagag agagagagag chr3:165443325-165443345 2 3.03e-05 g agagagag agagcgagag chr21:34144268-34144288 2 3.03e-05 g agagagag agagagcgag chrX:13044212-13044232 9 3.03e-05 Tgagagag agagagag agag chr18:29665347-29665367 4 3.03e-05 gag agagagag agagagaga chr1:89529914-89529934 11 3.03e-05 tgtgtgtgtg agagagag ag chr5:159953909-159953929 6 3.03e-05 gagag agagagag agtacca chr12:90052378-90052398 11 3.03e-05 agagagagag agagagag ag chr2:85960068-85960088 3 3.03e-05 ag agagagag agagagagag chr3:105087085-105087105 1 3.03e-05 . agagagag agagagagag chr6:42230242-42230262 4 3.03e-05 gag agagagag agagagaga chr5:102172567-102172587 4 3.03e-05 gag agagagag agagagaga chr8:82754785-82754805 13 3.03e-05 agcgagagcg agagagag chr4:124697670-124697690 1 3.03e-05 . agagagag agagagagag chr9:4600480-4600500 4 3.03e-05 gcc agagagag ccagagaga chr1:156613425-156613445 11 3.03e-05 acagagagag agagagag ag chr15:44580686-44580706 7 3.03e-05 cgagcg agagagag cgagag chr18:58756177-58756197 7 3.03e-05 agagag agagagag agagag chr17:38601216-38601236 9 3.03e-05 agagagag agagagag agag chr11:128563865-12856388 1 3.03e-05 . agagagag agagagagag chr5:150439337-150439357 4 3.03e-05 gac agagagag agagagaga chr5:17217179-17217199 7 3.03e-05 tgagag agagagag agagag chr21:25485921-25485941 7 3.03e-05 gagagg agagagag aATGCT chr2:74517788-74517808 2 3.03e-05 g agagagag aagtgagagg chr8:71072906-71072926 13 3.03e-05 agagagaggg agagagag chr2:203520435-203520455 7 3.03e-05 agagag agagagag agagag chr16:9133232-9133252 4 3.03e-05 gag agagagag agagagaga chr12:49616499-49616519 11 3.03e-05 agacagagag agagagag ag chr1:33921516-33921536 1 3.03e-05 . agagagag agagagagag chr16:46864184-46864204 13 3.03e-05 agagagagag agagagag chr1:111162716-111162736 3 3.03e-05 ag agagagag agagaAATTT chr3:105473363-105473383 7 3.03e-05 agacag agagagag agagag chr18:32993014-32993034 3 3.03e-05 ag agagagag agagagagag chr7:150452699-150452719 1 3.03e-05 . agagagag agagagagag chr3:136993236-136993256 6 3.03e-05 gaggg agagagag agggaga chr3:57029669-57029689 3 3.03e-05 ag agagagag agagagagag chr4:1874327-1874347 9 3.03e-05 agagagag agagagag agag chr10:29798275-29798295 4 3.03e-05 gag agagagag agagagaga chrX:23760330-23760350 4 3.03e-05 gag agagagag agagagaga chr11:62421295-62421315 2 3.03e-05 g agagagag agagagagag chr8:38741332-38741352 1 3.03e-05 . agagagag agagaCTCAC chr11:128761333-12876135 10 3.03e-05 cacagagag agagagag aga chr9:100926019-100926039 6 3.03e-05 gtgtg agagagag agagaga chr4:164165362-164165382 1 3.03e-05 . agagagag agagagagag chrX:139844384-139844404 11 3.03e-05 agagagagag agagagag ag chr9:21990613-21990633 3 3.03e-05 ag agagagag agagagagag chr7:29235228-29235248 1 3.03e-05 . agagagag agagagagag chr2:158271108-158271128 4 3.03e-05 gag agagagag agagagaga chrX:40653399-40653419 2 3.03e-05 g agagagag agagagagag chr8:67434047-67434067 2 3.03e-05 g agagagag agagagagag chr16:27296466-27296486 4 3.03e-05 gag agagagag agagagaga chr11:9696946-9696966 7 3.03e-05 agagag agagagag agagag chr14:101083790-10108381 2 3.03e-05 g agagagag agagagagag chr1:161706331-161706351 7 3.03e-05 agaggg agagagag agagag chr10:91053431-91053451 7 3.03e-05 gagatg agagagag agagag chr8:81076274-81076294 4 3.03e-05 gag agagagag agagacaga chr15:37390612-37390632 4 3.03e-05 gag agagagag agaAAATAA chr11:64472119-64472139 7 3.03e-05 agagag agagagag agagag chr2:65529253-65529273 1 3.03e-05 . agagagag agagagagag chr1:97991333-97991353 4 3.03e-05 gag agagagag agTGTGTGT chr15:60691233-60691253 10 3.03e-05 cacagagag agagagag aga chr7:30560509-30560529 2 3.03e-05 g agagagag agagagagag chr4:160025674-160025694 13 3.03e-05 agggagagac agagagag chr3:114173037-114173057 3 3.03e-05 ag agagagag agagagagag chr4:119811901-119811921 11 6.27e-05 gtgtgtgtgt AGGGAGAG AG chrX:106985623-106985643 4 6.27e-05 gag agggagag agACTGAGT chr17:72292532-72292552 1 9.09e-05 . agagagaa agaaagaAAA chrX:114849834-114849854 2 9.09e-05 g agagagaa agGAAACAGT chrX:78212923-78212943 11 9.09e-05 GTGAGGGAAC AGAGAGAA GG chrX:119149521-119149541 12 1.68e-04 tgtgtgtgtg ACagagag a chr3:157824336-157824356 13 2.61e-04 GGGAGGGGAA AAGgagag chrX:80065171-80065191 9 2.61e-04 GGAGGAGG AAGgagag gaga chr1:89487515-89487535 12 3.39e-04 agTGCCAGCA AGGGAGAT G chr6:18327755-18327775 1 3.74e-04 . agggaggg agggagggaa -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGAGAG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:14385677-14385697 3e-05 3_[+1]_9 chr5:64071886-64071906 3e-05 12_[+1] chr16:58970765-58970785 3e-05 10_[+1]_2 chr19:51523451-51523471 3e-05 11_[+1]_1 chr1:147012908-147012928 3e-05 [+1]_12 chr11:82393547-82393567 3e-05 5_[+1]_7 chr22:27044851-27044871 3e-05 2_[+1]_10 chr12:95158051-95158071 3e-05 9_[+1]_3 chr10:71892890-71892910 3e-05 6_[+1]_6 chr17:5153173-5153193 3e-05 12_[+1] chr1:155214641-155214661 3e-05 [+1]_12 chr4:54973607-54973627 3e-05 3_[+1]_9 chr5:52152522-52152542 3e-05 8_[+1]_4 chr6:115035072-115035092 3e-05 [+1]_12 chr15:89956091-89956111 3e-05 3_[+1]_9 chr1:92921078-92921098 3e-05 1_[+1]_11 chr3:165443325-165443345 3e-05 1_[+1]_11 chr21:34144268-34144288 3e-05 1_[+1]_11 chrX:13044212-13044232 3e-05 8_[+1]_4 chr18:29665347-29665367 3e-05 3_[+1]_9 chr1:89529914-89529934 3e-05 10_[+1]_2 chr5:159953909-159953929 3e-05 5_[+1]_7 chr12:90052378-90052398 3e-05 10_[+1]_2 chr2:85960068-85960088 3e-05 2_[+1]_10 chr3:105087085-105087105 3e-05 [+1]_12 chr6:42230242-42230262 3e-05 3_[+1]_9 chr5:102172567-102172587 3e-05 3_[+1]_9 chr8:82754785-82754805 3e-05 12_[+1] chr4:124697670-124697690 3e-05 [+1]_12 chr9:4600480-4600500 3e-05 3_[+1]_9 chr1:156613425-156613445 3e-05 10_[+1]_2 chr15:44580686-44580706 3e-05 6_[+1]_6 chr18:58756177-58756197 3e-05 6_[+1]_6 chr17:38601216-38601236 3e-05 8_[+1]_4 chr11:128563865-12856388 3e-05 [+1]_12 chr5:150439337-150439357 3e-05 3_[+1]_9 chr5:17217179-17217199 3e-05 6_[+1]_6 chr21:25485921-25485941 3e-05 6_[+1]_6 chr2:74517788-74517808 3e-05 1_[+1]_11 chr8:71072906-71072926 3e-05 12_[+1] chr2:203520435-203520455 3e-05 6_[+1]_6 chr16:9133232-9133252 3e-05 3_[+1]_9 chr12:49616499-49616519 3e-05 10_[+1]_2 chr1:33921516-33921536 3e-05 [+1]_12 chr16:46864184-46864204 3e-05 12_[+1] chr1:111162716-111162736 3e-05 2_[+1]_10 chr3:105473363-105473383 3e-05 6_[+1]_6 chr18:32993014-32993034 3e-05 2_[+1]_10 chr7:150452699-150452719 3e-05 [+1]_12 chr3:136993236-136993256 3e-05 5_[+1]_7 chr3:57029669-57029689 3e-05 2_[+1]_10 chr4:1874327-1874347 3e-05 8_[+1]_4 chr10:29798275-29798295 3e-05 3_[+1]_9 chrX:23760330-23760350 3e-05 3_[+1]_9 chr11:62421295-62421315 3e-05 1_[+1]_11 chr8:38741332-38741352 3e-05 [+1]_12 chr11:128761333-12876135 3e-05 9_[+1]_3 chr9:100926019-100926039 3e-05 5_[+1]_7 chr4:164165362-164165382 3e-05 [+1]_12 chrX:139844384-139844404 3e-05 10_[+1]_2 chr9:21990613-21990633 3e-05 2_[+1]_10 chr7:29235228-29235248 3e-05 [+1]_12 chr2:158271108-158271128 3e-05 3_[+1]_9 chrX:40653399-40653419 3e-05 1_[+1]_11 chr8:67434047-67434067 3e-05 1_[+1]_11 chr16:27296466-27296486 3e-05 3_[+1]_9 chr11:9696946-9696966 3e-05 6_[+1]_6 chr14:101083790-10108381 3e-05 1_[+1]_11 chr1:161706331-161706351 3e-05 6_[+1]_6 chr10:91053431-91053451 3e-05 6_[+1]_6 chr8:81076274-81076294 3e-05 3_[+1]_9 chr15:37390612-37390632 3e-05 3_[+1]_9 chr11:64472119-64472139 3e-05 6_[+1]_6 chr2:65529253-65529273 3e-05 [+1]_12 chr1:97991333-97991353 3e-05 3_[+1]_9 chr15:60691233-60691253 3e-05 9_[+1]_3 chr7:30560509-30560529 3e-05 1_[+1]_11 chr4:160025674-160025694 3e-05 12_[+1] chr3:114173037-114173057 3e-05 2_[+1]_10 chr4:119811901-119811921 6.3e-05 10_[+1]_2 chrX:106985623-106985643 6.3e-05 3_[+1]_9 chr17:72292532-72292552 9.1e-05 [+1]_12 chrX:114849834-114849854 9.1e-05 1_[+1]_11 chrX:78212923-78212943 9.1e-05 10_[+1]_2 chrX:119149521-119149541 0.00017 11_[+1]_1 chr3:157824336-157824356 0.00026 12_[+1] chrX:80065171-80065191 0.00026 8_[+1]_4 chr1:89487515-89487535 0.00034 11_[+1]_1 chr6:18327755-18327775 0.00037 [+1]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGAGAG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGAGAGAG width=8 seqs=89 chr19:14385677-14385697 ( 4) AGAGAGAG 1 chr5:64071886-64071906 ( 13) AGAGAGAG 1 chr16:58970765-58970785 ( 11) AGAGAGAG 1 chr19:51523451-51523471 ( 12) AGAGAGAG 1 chr1:147012908-147012928 ( 1) AGAGAGAG 1 chr11:82393547-82393567 ( 6) AGAGAGAG 1 chr22:27044851-27044871 ( 3) AGAGAGAG 1 chr12:95158051-95158071 ( 10) AGAGAGAG 1 chr10:71892890-71892910 ( 7) AGAGAGAG 1 chr17:5153173-5153193 ( 13) AGAGAGAG 1 chr1:155214641-155214661 ( 1) AGAGAGAG 1 chr4:54973607-54973627 ( 4) AGAGAGAG 1 chr5:52152522-52152542 ( 9) AGAGAGAG 1 chr6:115035072-115035092 ( 1) AGAGAGAG 1 chr15:89956091-89956111 ( 4) AGAGAGAG 1 chr1:92921078-92921098 ( 2) AGAGAGAG 1 chr3:165443325-165443345 ( 2) AGAGAGAG 1 chr21:34144268-34144288 ( 2) AGAGAGAG 1 chrX:13044212-13044232 ( 9) AGAGAGAG 1 chr18:29665347-29665367 ( 4) AGAGAGAG 1 chr1:89529914-89529934 ( 11) AGAGAGAG 1 chr5:159953909-159953929 ( 6) AGAGAGAG 1 chr12:90052378-90052398 ( 11) AGAGAGAG 1 chr2:85960068-85960088 ( 3) AGAGAGAG 1 chr3:105087085-105087105 ( 1) AGAGAGAG 1 chr6:42230242-42230262 ( 4) AGAGAGAG 1 chr5:102172567-102172587 ( 4) AGAGAGAG 1 chr8:82754785-82754805 ( 13) AGAGAGAG 1 chr4:124697670-124697690 ( 1) AGAGAGAG 1 chr9:4600480-4600500 ( 4) AGAGAGAG 1 chr1:156613425-156613445 ( 11) AGAGAGAG 1 chr15:44580686-44580706 ( 7) AGAGAGAG 1 chr18:58756177-58756197 ( 7) AGAGAGAG 1 chr17:38601216-38601236 ( 9) AGAGAGAG 1 chr11:128563865-12856388 ( 1) AGAGAGAG 1 chr5:150439337-150439357 ( 4) AGAGAGAG 1 chr5:17217179-17217199 ( 7) AGAGAGAG 1 chr21:25485921-25485941 ( 7) AGAGAGAG 1 chr2:74517788-74517808 ( 2) AGAGAGAG 1 chr8:71072906-71072926 ( 13) AGAGAGAG 1 chr2:203520435-203520455 ( 7) AGAGAGAG 1 chr16:9133232-9133252 ( 4) AGAGAGAG 1 chr12:49616499-49616519 ( 11) AGAGAGAG 1 chr1:33921516-33921536 ( 1) AGAGAGAG 1 chr16:46864184-46864204 ( 13) AGAGAGAG 1 chr1:111162716-111162736 ( 3) AGAGAGAG 1 chr3:105473363-105473383 ( 7) AGAGAGAG 1 chr18:32993014-32993034 ( 3) AGAGAGAG 1 chr7:150452699-150452719 ( 1) AGAGAGAG 1 chr3:136993236-136993256 ( 6) AGAGAGAG 1 chr3:57029669-57029689 ( 3) AGAGAGAG 1 chr4:1874327-1874347 ( 9) AGAGAGAG 1 chr10:29798275-29798295 ( 4) AGAGAGAG 1 chrX:23760330-23760350 ( 4) AGAGAGAG 1 chr11:62421295-62421315 ( 2) AGAGAGAG 1 chr8:38741332-38741352 ( 1) AGAGAGAG 1 chr11:128761333-12876135 ( 10) AGAGAGAG 1 chr9:100926019-100926039 ( 6) AGAGAGAG 1 chr4:164165362-164165382 ( 1) AGAGAGAG 1 chrX:139844384-139844404 ( 11) AGAGAGAG 1 chr9:21990613-21990633 ( 3) AGAGAGAG 1 chr7:29235228-29235248 ( 1) AGAGAGAG 1 chr2:158271108-158271128 ( 4) AGAGAGAG 1 chrX:40653399-40653419 ( 2) AGAGAGAG 1 chr8:67434047-67434067 ( 2) AGAGAGAG 1 chr16:27296466-27296486 ( 4) AGAGAGAG 1 chr11:9696946-9696966 ( 7) AGAGAGAG 1 chr14:101083790-10108381 ( 2) AGAGAGAG 1 chr1:161706331-161706351 ( 7) AGAGAGAG 1 chr10:91053431-91053451 ( 7) AGAGAGAG 1 chr8:81076274-81076294 ( 4) AGAGAGAG 1 chr15:37390612-37390632 ( 4) AGAGAGAG 1 chr11:64472119-64472139 ( 7) AGAGAGAG 1 chr2:65529253-65529273 ( 1) AGAGAGAG 1 chr1:97991333-97991353 ( 4) AGAGAGAG 1 chr15:60691233-60691253 ( 10) AGAGAGAG 1 chr7:30560509-30560529 ( 2) AGAGAGAG 1 chr4:160025674-160025694 ( 13) AGAGAGAG 1 chr3:114173037-114173057 ( 3) AGAGAGAG 1 chr4:119811901-119811921 ( 11) AGGGAGAG 1 chrX:106985623-106985643 ( 4) AGGGAGAG 1 chr17:72292532-72292552 ( 1) AGAGAGAA 1 chrX:114849834-114849854 ( 2) AGAGAGAA 1 chrX:78212923-78212943 ( 11) AGAGAGAA 1 chrX:119149521-119149541 ( 12) ACAGAGAG 1 chr3:157824336-157824356 ( 13) AAGGAGAG 1 chrX:80065171-80065191 ( 9) AAGGAGAG 1 chr1:89487515-89487535 ( 12) AGGGAGAT 1 chr6:18327755-18327775 ( 1) AGGGAGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGAGAG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 4.70256 E= 7.4e-188 193 -1312 -1312 -1312 -355 -433 177 -1312 183 -1312 -207 -1312 -1312 -1312 182 -1312 193 -1312 -1312 -1312 -1312 -1312 182 -1312 191 -1312 -465 -1312 -296 -1312 176 -434 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGAGAG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 89 E= 7.4e-188 1.000000 0.000000 0.000000 0.000000 0.022472 0.011236 0.966292 0.000000 0.932584 0.000000 0.067416 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.988764 0.000000 0.011236 0.000000 0.033708 0.000000 0.955056 0.011236 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGAGAG MEME-1 regular expression -------------------------------------------------------------------------------- AGAGAGAG -------------------------------------------------------------------------------- Time 1.97 secs. ******************************************************************************** ******************************************************************************** MOTIF CTCTCTCT MEME-2 width = 8 sites = 69 llr = 752 E-value = 1.1e-170 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTCTCTCT MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::1:: pos.-specific C a:9:a:a: probability G :::::::: matrix T :a:a:9:a bits 2.1 ** * 1.9 ** ** ** 1.7 ******** 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (15.7 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTCTCTCT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTCTCT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:135755985-135756005 12 7.05e-06 ctctctttct ctctctct c chr8:120082681-120082701 13 7.05e-06 cgctctctct ctctctct chr5:33836035-33836055 13 7.05e-06 ctctctctct ctctctct chr19:45186323-45186343 11 7.05e-06 TGGActctct ctctctct ct chr4:106819501-106819521 8 7.05e-06 tctctct ctctctct ctctc chr10:49509620-49509640 8 7.05e-06 tctctct ctctctct ctctc chr20:61732933-61732953 1 7.05e-06 . ctctctct ctccctctct chr13:28555146-28555166 7 7.05e-06 ctctct ctctctct ctctcc chr5:19935911-19935931 8 7.05e-06 tctctct ctctctct ctctc chr22:33599058-33599078 13 7.05e-06 ctctctctct ctctctct chr2:198238768-198238788 13 7.05e-06 ctctctctct ctctctct chr7:137530877-137530897 9 7.05e-06 ctttctct ctctctct ctct chr17:47946254-47946274 9 7.05e-06 TCAGGGAt ctctctct ctct chr9:93862407-93862427 10 7.05e-06 tctatttct ctctctct ctc chr6:143141435-143141455 13 7.05e-06 ctctctctct ctctctct chr8:82783064-82783084 11 7.05e-06 GGCAGtctct ctctctct ct chr3:121749478-121749498 8 7.05e-06 tctctct ctctctct ctctc chr6:12104599-12104619 4 7.05e-06 tct ctctctct ttctctctc chr8:129325555-129325575 13 7.05e-06 ctctctctct ctctctct chr14:60798038-60798058 12 7.05e-06 ctctctctct ctctctct A chr20:62362271-62362291 11 7.05e-06 cattctctct ctctctct ct chr17:65693405-65693425 9 7.05e-06 ctcgccct ctctctct ctct chr5:92917539-92917559 8 7.05e-06 ctcctct ctctctct ctctc chr10:63383642-63383662 1 7.05e-06 . ctctctct ctctctctct chr3:57051031-57051051 10 7.05e-06 tgtctctct ctctctct ctc chr1:199498644-199498664 12 7.05e-06 ccctctctct ctctctct c chrX:122317975-122317995 4 7.05e-06 tct ctctctct ctATCATAG chr5:158477171-158477191 1 7.05e-06 . ctctctct ctctctctct chr2:145268269-145268289 4 7.05e-06 tct ctctctct ctctttctc chr1:207997393-207997413 10 7.05e-06 tctctctct ctctctct ctc chr11:107734980-10773500 12 7.05e-06 ctctctctct ctctctct c chr10:44503794-44503814 7 7.05e-06 TCTTTt ctctctct ctctct chr3:14726938-14726958 11 7.05e-06 CCAGTGACct ctctctct ct chr1:180992224-180992244 8 7.05e-06 ctctctc ctctctct cctct chr4:129474186-129474206 8 7.05e-06 tctctct ctctctct ctctc chr9:108645899-108645919 8 7.05e-06 tctctct ctctctct ttctc chrX:114828932-114828952 3 7.05e-06 GC ctctctct ctctctctcc chr3:164914713-164914733 3 7.05e-06 tc ctctctct gtctctctct chr20:35095333-35095353 8 7.05e-06 tctctct ctctctct gtctc chr13:24845131-24845151 2 7.05e-06 t ctctctct ctctctccac chr6:14877095-14877115 7 7.05e-06 gtctct ctctctct ctctct chrX:129086774-129086794 13 7.05e-06 ctctctctct ctctctct chr1:31807157-31807177 13 7.05e-06 ctctctctct ctctctct chr10:18647446-18647466 13 7.05e-06 ctctctctct ctctctct chr14:22926177-22926197 6 7.05e-06 tctct ctctctct ctctctc chr2:43274006-43274026 10 7.05e-06 tctctctct ctctctct ctc chr1:208260312-208260332 2 7.05e-06 t ctctctct ctctGTGTGT chr9:23850726-23850746 9 7.05e-06 ttctctct ctctctct ctct chr17:46755332-46755352 13 7.05e-06 ctctctctct ctctctct chr2:198920020-198920040 13 7.05e-06 ctctctctct ctctctct chr2:175464525-175464545 6 7.05e-06 tctct ctctctct ctagcta chr11:131760072-13176009 2 7.05e-06 t ctctctct ctctctcACA chr14:71347854-71347874 10 7.05e-06 tctctctct ctctctct ctc chr4:144299792-144299812 2 7.05e-06 t ctctctct ctctctctct chr14:68623173-68623193 13 7.05e-06 ctctctctct ctctctct chr15:70308489-70308509 13 7.05e-06 ctctctctct ctctctct chr3:138328382-138328402 12 7.05e-06 ctctctctct ctctctct c chr1:59482280-59482300 3 1.52e-05 CA CTCTCACT CCTATGCAGG chr10:110654335-11065435 4 1.52e-05 Cct ctctcact ctcgctctc chr11:72436301-72436321 7 2.23e-05 GACAGA CTTTCTCT TCTCTA chr1:156786877-156786897 11 2.23e-05 GCTTCTATTT CTTTCTCT CT chr10:60818453-60818473 1 2.23e-05 . ctttctct cATAGTCTAC chr15:89748421-89748441 5 3.04e-05 gggt ctcactct gttgccca chr1:161067421-161067441 1 3.04e-05 . CTCACTCT TCCCCCACTT chr8:101844764-101844784 3 5.39e-05 cg ctctcttt attgctctct chrX:119443539-119443559 8 6.26e-05 tctctcg ctctcgct gtcgc chr4:113783025-113783045 2 9.78e-05 A CTCTCACA GTTTATGCGA chr20:43239136-43239156 2 9.78e-05 t ctctcaca cacacacaca chr20:61147904-61147924 6 1.67e-04 TCTCC CTAACTCT GCACCAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTCTCT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:135755985-135756005 7e-06 11_[+2]_1 chr8:120082681-120082701 7e-06 12_[+2] chr5:33836035-33836055 7e-06 12_[+2] chr19:45186323-45186343 7e-06 10_[+2]_2 chr4:106819501-106819521 7e-06 7_[+2]_5 chr10:49509620-49509640 7e-06 7_[+2]_5 chr20:61732933-61732953 7e-06 [+2]_12 chr13:28555146-28555166 7e-06 6_[+2]_6 chr5:19935911-19935931 7e-06 7_[+2]_5 chr22:33599058-33599078 7e-06 12_[+2] chr2:198238768-198238788 7e-06 12_[+2] chr7:137530877-137530897 7e-06 8_[+2]_4 chr17:47946254-47946274 7e-06 8_[+2]_4 chr9:93862407-93862427 7e-06 9_[+2]_3 chr6:143141435-143141455 7e-06 12_[+2] chr8:82783064-82783084 7e-06 10_[+2]_2 chr3:121749478-121749498 7e-06 7_[+2]_5 chr6:12104599-12104619 7e-06 3_[+2]_9 chr8:129325555-129325575 7e-06 12_[+2] chr14:60798038-60798058 7e-06 11_[+2]_1 chr20:62362271-62362291 7e-06 10_[+2]_2 chr17:65693405-65693425 7e-06 8_[+2]_4 chr5:92917539-92917559 7e-06 7_[+2]_5 chr10:63383642-63383662 7e-06 [+2]_12 chr3:57051031-57051051 7e-06 9_[+2]_3 chr1:199498644-199498664 7e-06 11_[+2]_1 chrX:122317975-122317995 7e-06 3_[+2]_9 chr5:158477171-158477191 7e-06 [+2]_12 chr2:145268269-145268289 7e-06 3_[+2]_9 chr1:207997393-207997413 7e-06 9_[+2]_3 chr11:107734980-10773500 7e-06 11_[+2]_1 chr10:44503794-44503814 7e-06 6_[+2]_6 chr3:14726938-14726958 7e-06 10_[+2]_2 chr1:180992224-180992244 7e-06 7_[+2]_5 chr4:129474186-129474206 7e-06 7_[+2]_5 chr9:108645899-108645919 7e-06 7_[+2]_5 chrX:114828932-114828952 7e-06 2_[+2]_10 chr3:164914713-164914733 7e-06 2_[+2]_10 chr20:35095333-35095353 7e-06 7_[+2]_5 chr13:24845131-24845151 7e-06 1_[+2]_11 chr6:14877095-14877115 7e-06 6_[+2]_6 chrX:129086774-129086794 7e-06 12_[+2] chr1:31807157-31807177 7e-06 12_[+2] chr10:18647446-18647466 7e-06 12_[+2] chr14:22926177-22926197 7e-06 5_[+2]_7 chr2:43274006-43274026 7e-06 9_[+2]_3 chr1:208260312-208260332 7e-06 1_[+2]_11 chr9:23850726-23850746 7e-06 8_[+2]_4 chr17:46755332-46755352 7e-06 12_[+2] chr2:198920020-198920040 7e-06 12_[+2] chr2:175464525-175464545 7e-06 5_[+2]_7 chr11:131760072-13176009 7e-06 1_[+2]_11 chr14:71347854-71347874 7e-06 9_[+2]_3 chr4:144299792-144299812 7e-06 1_[+2]_11 chr14:68623173-68623193 7e-06 12_[+2] chr15:70308489-70308509 7e-06 12_[+2] chr3:138328382-138328402 7e-06 11_[+2]_1 chr1:59482280-59482300 1.5e-05 2_[+2]_10 chr10:110654335-11065435 1.5e-05 3_[+2]_9 chr11:72436301-72436321 2.2e-05 6_[+2]_6 chr1:156786877-156786897 2.2e-05 10_[+2]_2 chr10:60818453-60818473 2.2e-05 [+2]_12 chr15:89748421-89748441 3e-05 4_[+2]_8 chr1:161067421-161067441 3e-05 [+2]_12 chr8:101844764-101844784 5.4e-05 2_[+2]_10 chrX:119443539-119443559 6.3e-05 7_[+2]_5 chr4:113783025-113783045 9.8e-05 1_[+2]_11 chr20:43239136-43239156 9.8e-05 1_[+2]_11 chr20:61147904-61147924 0.00017 5_[+2]_7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTCTCT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTCTCTCT width=8 seqs=69 chrX:135755985-135756005 ( 12) CTCTCTCT 1 chr8:120082681-120082701 ( 13) CTCTCTCT 1 chr5:33836035-33836055 ( 13) CTCTCTCT 1 chr19:45186323-45186343 ( 11) CTCTCTCT 1 chr4:106819501-106819521 ( 8) CTCTCTCT 1 chr10:49509620-49509640 ( 8) CTCTCTCT 1 chr20:61732933-61732953 ( 1) CTCTCTCT 1 chr13:28555146-28555166 ( 7) CTCTCTCT 1 chr5:19935911-19935931 ( 8) CTCTCTCT 1 chr22:33599058-33599078 ( 13) CTCTCTCT 1 chr2:198238768-198238788 ( 13) CTCTCTCT 1 chr7:137530877-137530897 ( 9) CTCTCTCT 1 chr17:47946254-47946274 ( 9) CTCTCTCT 1 chr9:93862407-93862427 ( 10) CTCTCTCT 1 chr6:143141435-143141455 ( 13) CTCTCTCT 1 chr8:82783064-82783084 ( 11) CTCTCTCT 1 chr3:121749478-121749498 ( 8) CTCTCTCT 1 chr6:12104599-12104619 ( 4) CTCTCTCT 1 chr8:129325555-129325575 ( 13) CTCTCTCT 1 chr14:60798038-60798058 ( 12) CTCTCTCT 1 chr20:62362271-62362291 ( 11) CTCTCTCT 1 chr17:65693405-65693425 ( 9) CTCTCTCT 1 chr5:92917539-92917559 ( 8) CTCTCTCT 1 chr10:63383642-63383662 ( 1) CTCTCTCT 1 chr3:57051031-57051051 ( 10) CTCTCTCT 1 chr1:199498644-199498664 ( 12) CTCTCTCT 1 chrX:122317975-122317995 ( 4) CTCTCTCT 1 chr5:158477171-158477191 ( 1) CTCTCTCT 1 chr2:145268269-145268289 ( 4) CTCTCTCT 1 chr1:207997393-207997413 ( 10) CTCTCTCT 1 chr11:107734980-10773500 ( 12) CTCTCTCT 1 chr10:44503794-44503814 ( 7) CTCTCTCT 1 chr3:14726938-14726958 ( 11) CTCTCTCT 1 chr1:180992224-180992244 ( 8) CTCTCTCT 1 chr4:129474186-129474206 ( 8) CTCTCTCT 1 chr9:108645899-108645919 ( 8) CTCTCTCT 1 chrX:114828932-114828952 ( 3) CTCTCTCT 1 chr3:164914713-164914733 ( 3) CTCTCTCT 1 chr20:35095333-35095353 ( 8) CTCTCTCT 1 chr13:24845131-24845151 ( 2) CTCTCTCT 1 chr6:14877095-14877115 ( 7) CTCTCTCT 1 chrX:129086774-129086794 ( 13) CTCTCTCT 1 chr1:31807157-31807177 ( 13) CTCTCTCT 1 chr10:18647446-18647466 ( 13) CTCTCTCT 1 chr14:22926177-22926197 ( 6) CTCTCTCT 1 chr2:43274006-43274026 ( 10) CTCTCTCT 1 chr1:208260312-208260332 ( 2) CTCTCTCT 1 chr9:23850726-23850746 ( 9) CTCTCTCT 1 chr17:46755332-46755352 ( 13) CTCTCTCT 1 chr2:198920020-198920040 ( 13) CTCTCTCT 1 chr2:175464525-175464545 ( 6) CTCTCTCT 1 chr11:131760072-13176009 ( 2) CTCTCTCT 1 chr14:71347854-71347874 ( 10) CTCTCTCT 1 chr4:144299792-144299812 ( 2) CTCTCTCT 1 chr14:68623173-68623193 ( 13) CTCTCTCT 1 chr15:70308489-70308509 ( 13) CTCTCTCT 1 chr3:138328382-138328402 ( 12) CTCTCTCT 1 chr1:59482280-59482300 ( 3) CTCTCACT 1 chr10:110654335-11065435 ( 4) CTCTCACT 1 chr11:72436301-72436321 ( 7) CTTTCTCT 1 chr1:156786877-156786897 ( 11) CTTTCTCT 1 chr10:60818453-60818473 ( 1) CTTTCTCT 1 chr15:89748421-89748441 ( 5) CTCACTCT 1 chr1:161067421-161067441 ( 1) CTCACTCT 1 chr8:101844764-101844784 ( 3) CTCTCTTT 1 chrX:119443539-119443559 ( 8) CTCTCGCT 1 chr4:113783025-113783045 ( 2) CTCTCACA 1 chr20:43239136-43239156 ( 2) CTCTCACA 1 chr20:61147904-61147924 ( 6) CTAACTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTCTCT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 5.61471 E= 1.1e-170 -1275 214 -1275 -1275 -1275 -1275 -1275 213 -418 206 -1275 -239 -260 -1275 -1275 207 -1275 214 -1275 -1275 -218 -1275 -428 202 -1275 212 -1275 -397 -318 -1275 -1275 209 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTCTCT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 69 E= 1.1e-170 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.014493 0.942029 0.000000 0.043478 0.043478 0.000000 0.000000 0.956522 0.000000 1.000000 0.000000 0.000000 0.057971 0.000000 0.014493 0.927536 0.000000 0.985507 0.000000 0.014493 0.028986 0.000000 0.000000 0.971014 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTCTCT MEME-2 regular expression -------------------------------------------------------------------------------- CTCTCTCT -------------------------------------------------------------------------------- Time 2.90 secs. ******************************************************************************** ******************************************************************************** MOTIF AGAGAGAG MEME-3 width = 8 sites = 57 llr = 527 E-value = 5.1e-091 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGAGAGAG MEME-3 Description -------------------------------------------------------------------------------- Simplified A a:9:9:a: pos.-specific C :1::1::: probability G :9:a:9:a matrix T ::1::::: bits 2.1 1.9 * ** 1.7 * ** ** 1.5 **** *** Relative 1.3 ******** Entropy 1.1 ******** (13.3 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGAGAGAG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGAGAG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr19:14385677-14385697 12 3.03e-05 agagagagag agagagag a chr19:51523451-51523471 4 3.03e-05 GCC agagagag agagagaga chr1:147012908-147012928 11 3.03e-05 agagagagac agagagag ag chr1:155214641-155214661 13 3.03e-05 agagagagag agagagag chr4:54973607-54973627 12 3.03e-05 agagagagag agagagag a chr5:52152522-52152542 1 3.03e-05 . agagagag agagagagag chr6:115035072-115035092 9 3.03e-05 agagagag agagagag agag chr15:89956091-89956111 12 3.03e-05 agagagagag agagagag a chr1:92921078-92921098 10 3.03e-05 gagagagag agagagag aga chr18:29665347-29665367 12 3.03e-05 agagagagag agagagag a chr12:90052378-90052398 1 3.03e-05 . agagagag agagagagag chr2:85960068-85960088 13 3.03e-05 agagagagag agagagag chr3:105087085-105087105 9 3.03e-05 agagagag agagagag agag chr6:42230242-42230262 12 3.03e-05 agagagagag agagagag a chr5:102172567-102172587 12 3.03e-05 agagagagag agagagag a chr4:124697670-124697690 11 3.03e-05 agagagagag agagagag ac chr1:156613425-156613445 3 3.03e-05 ac agagagag agagagagag chr17:38601216-38601236 1 3.03e-05 . agagagag agagagagag chr11:128563865-12856388 11 3.03e-05 agagagagag agagagag ag chr5:150439337-150439357 12 3.03e-05 acagagagag agagagag a chr8:71072906-71072926 1 3.03e-05 . agagagag agggagagag chr16:9133232-9133252 12 3.03e-05 agagagagag agagagag a chr1:33921516-33921536 9 3.03e-05 agagagag agagagag agag chr16:46864184-46864204 3 3.03e-05 ag agagagag agagagagag chr18:32993014-32993034 11 3.03e-05 agagagagag agagagag ag chr7:150452699-150452719 11 3.03e-05 agagagagag agagagag ag chr3:57029669-57029689 11 3.03e-05 agagagagag agagagag ag chr4:1874327-1874347 1 3.03e-05 . agagagag agagagagag chr10:29798275-29798295 12 3.03e-05 agagagagag agagagag a chrX:23760330-23760350 12 3.03e-05 agagagagag agagagag a chr11:62421295-62421315 10 3.03e-05 gagagagag agagagag aga chr4:164165362-164165382 9 3.03e-05 agagagag agagagag agag chrX:139844384-139844404 1 3.03e-05 . agagagag agagagagag chr9:21990613-21990633 11 3.03e-05 agagagagag agagagag ag chr7:29235228-29235248 9 3.03e-05 agagagag agagagag agtg chr2:158271108-158271128 12 3.03e-05 agagagagag agagagag a chrX:40653399-40653419 10 3.03e-05 gagagagag agagagag aga chr8:67434047-67434067 12 3.03e-05 agagagagag agagagag a chr16:27296466-27296486 12 3.03e-05 agagagagag agagagag a chr14:101083790-10108381 12 3.03e-05 agagagagag agagagag a chr2:65529253-65529273 13 3.03e-05 agagagagag agagagag chr7:30560509-30560529 12 3.03e-05 agagagagag agagagag a chr3:114173037-114173057 11 3.03e-05 agagagagag agagagag ag chr3:165443325-165443345 10 1.07e-04 gagagagag agagcgag aga chr21:34144268-34144288 12 1.07e-04 agagagagag agagcgag a chr8:82754785-82754805 1 1.07e-04 . agagcgag agcgagagag chr2:74517788-74517808 11 1.07e-04 gagagagaga agtgagag gg chr12:49616499-49616519 3 1.07e-04 ag acagagag agagagagag chr11:128761333-12876135 2 1.07e-04 c acagagag agagagagag chr15:60691233-60691253 2 1.07e-04 c acagagag agagagagag chrX:13044212-13044232 1 1.33e-04 . Tgagagag agagagagag chr17:5153173-5153193 2 1.61e-04 a agagaaag agaagagaga chr22:27044851-27044871 13 2.12e-04 agagagagag agagtgag chr8:81076274-81076294 12 2.12e-04 agagagagag agagacag a chr4:160025674-160025694 1 2.44e-04 . agagggag agacagagag chr2:65832123-65832143 13 3.75e-04 tgtgtgtgtg tgtgagag chr20:30434229-30434249 1 4.46e-04 . AGTGAAAG GAATGAATag -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGAGAG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:14385677-14385697 3e-05 11_[+3]_1 chr19:51523451-51523471 3e-05 3_[+3]_9 chr1:147012908-147012928 3e-05 10_[+3]_2 chr1:155214641-155214661 3e-05 12_[+3] chr4:54973607-54973627 3e-05 11_[+3]_1 chr5:52152522-52152542 3e-05 [+3]_12 chr6:115035072-115035092 3e-05 8_[+3]_4 chr15:89956091-89956111 3e-05 11_[+3]_1 chr1:92921078-92921098 3e-05 9_[+3]_3 chr18:29665347-29665367 3e-05 11_[+3]_1 chr12:90052378-90052398 3e-05 [+3]_12 chr2:85960068-85960088 3e-05 12_[+3] chr3:105087085-105087105 3e-05 8_[+3]_4 chr6:42230242-42230262 3e-05 11_[+3]_1 chr5:102172567-102172587 3e-05 11_[+3]_1 chr4:124697670-124697690 3e-05 10_[+3]_2 chr1:156613425-156613445 3e-05 2_[+3]_10 chr17:38601216-38601236 3e-05 [+3]_12 chr11:128563865-12856388 3e-05 10_[+3]_2 chr5:150439337-150439357 3e-05 11_[+3]_1 chr8:71072906-71072926 3e-05 [+3]_12 chr16:9133232-9133252 3e-05 11_[+3]_1 chr1:33921516-33921536 3e-05 8_[+3]_4 chr16:46864184-46864204 3e-05 2_[+3]_10 chr18:32993014-32993034 3e-05 10_[+3]_2 chr7:150452699-150452719 3e-05 10_[+3]_2 chr3:57029669-57029689 3e-05 10_[+3]_2 chr4:1874327-1874347 3e-05 [+3]_12 chr10:29798275-29798295 3e-05 11_[+3]_1 chrX:23760330-23760350 3e-05 11_[+3]_1 chr11:62421295-62421315 3e-05 9_[+3]_3 chr4:164165362-164165382 3e-05 8_[+3]_4 chrX:139844384-139844404 3e-05 [+3]_12 chr9:21990613-21990633 3e-05 10_[+3]_2 chr7:29235228-29235248 3e-05 8_[+3]_4 chr2:158271108-158271128 3e-05 11_[+3]_1 chrX:40653399-40653419 3e-05 9_[+3]_3 chr8:67434047-67434067 3e-05 11_[+3]_1 chr16:27296466-27296486 3e-05 11_[+3]_1 chr14:101083790-10108381 3e-05 11_[+3]_1 chr2:65529253-65529273 3e-05 12_[+3] chr7:30560509-30560529 3e-05 11_[+3]_1 chr3:114173037-114173057 3e-05 10_[+3]_2 chr3:165443325-165443345 0.00011 9_[+3]_3 chr21:34144268-34144288 0.00011 11_[+3]_1 chr8:82754785-82754805 0.00011 [+3]_12 chr2:74517788-74517808 0.00011 10_[+3]_2 chr12:49616499-49616519 0.00011 2_[+3]_10 chr11:128761333-12876135 0.00011 1_[+3]_11 chr15:60691233-60691253 0.00011 1_[+3]_11 chrX:13044212-13044232 0.00013 [+3]_12 chr17:5153173-5153193 0.00016 1_[+3]_11 chr22:27044851-27044871 0.00021 12_[+3] chr8:81076274-81076294 0.00021 11_[+3]_1 chr4:160025674-160025694 0.00024 [+3]_12 chr2:65832123-65832143 0.00037 12_[+3] chr20:30434229-30434249 0.00045 [+3]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGAGAG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGAGAGAG width=8 seqs=57 chr19:14385677-14385697 ( 12) AGAGAGAG 1 chr19:51523451-51523471 ( 4) AGAGAGAG 1 chr1:147012908-147012928 ( 11) AGAGAGAG 1 chr1:155214641-155214661 ( 13) AGAGAGAG 1 chr4:54973607-54973627 ( 12) AGAGAGAG 1 chr5:52152522-52152542 ( 1) AGAGAGAG 1 chr6:115035072-115035092 ( 9) AGAGAGAG 1 chr15:89956091-89956111 ( 12) AGAGAGAG 1 chr1:92921078-92921098 ( 10) AGAGAGAG 1 chr18:29665347-29665367 ( 12) AGAGAGAG 1 chr12:90052378-90052398 ( 1) AGAGAGAG 1 chr2:85960068-85960088 ( 13) AGAGAGAG 1 chr3:105087085-105087105 ( 9) AGAGAGAG 1 chr6:42230242-42230262 ( 12) AGAGAGAG 1 chr5:102172567-102172587 ( 12) AGAGAGAG 1 chr4:124697670-124697690 ( 11) AGAGAGAG 1 chr1:156613425-156613445 ( 3) AGAGAGAG 1 chr17:38601216-38601236 ( 1) AGAGAGAG 1 chr11:128563865-12856388 ( 11) AGAGAGAG 1 chr5:150439337-150439357 ( 12) AGAGAGAG 1 chr8:71072906-71072926 ( 1) AGAGAGAG 1 chr16:9133232-9133252 ( 12) AGAGAGAG 1 chr1:33921516-33921536 ( 9) AGAGAGAG 1 chr16:46864184-46864204 ( 3) AGAGAGAG 1 chr18:32993014-32993034 ( 11) AGAGAGAG 1 chr7:150452699-150452719 ( 11) AGAGAGAG 1 chr3:57029669-57029689 ( 11) AGAGAGAG 1 chr4:1874327-1874347 ( 1) AGAGAGAG 1 chr10:29798275-29798295 ( 12) AGAGAGAG 1 chrX:23760330-23760350 ( 12) AGAGAGAG 1 chr11:62421295-62421315 ( 10) AGAGAGAG 1 chr4:164165362-164165382 ( 9) AGAGAGAG 1 chrX:139844384-139844404 ( 1) AGAGAGAG 1 chr9:21990613-21990633 ( 11) AGAGAGAG 1 chr7:29235228-29235248 ( 9) AGAGAGAG 1 chr2:158271108-158271128 ( 12) AGAGAGAG 1 chrX:40653399-40653419 ( 10) AGAGAGAG 1 chr8:67434047-67434067 ( 12) AGAGAGAG 1 chr16:27296466-27296486 ( 12) AGAGAGAG 1 chr14:101083790-10108381 ( 12) AGAGAGAG 1 chr2:65529253-65529273 ( 13) AGAGAGAG 1 chr7:30560509-30560529 ( 12) AGAGAGAG 1 chr3:114173037-114173057 ( 11) AGAGAGAG 1 chr3:165443325-165443345 ( 10) AGAGCGAG 1 chr21:34144268-34144288 ( 12) AGAGCGAG 1 chr8:82754785-82754805 ( 1) AGAGCGAG 1 chr2:74517788-74517808 ( 11) AGTGAGAG 1 chr12:49616499-49616519 ( 3) ACAGAGAG 1 chr11:128761333-12876135 ( 2) ACAGAGAG 1 chr15:60691233-60691253 ( 2) ACAGAGAG 1 chrX:13044212-13044232 ( 1) TGAGAGAG 1 chr17:5153173-5153193 ( 2) AGAGAAAG 1 chr22:27044851-27044871 ( 13) AGAGTGAG 1 chr8:81076274-81076294 ( 12) AGAGACAG 1 chr4:160025674-160025694 ( 1) AGAGGGAG 1 chr2:65832123-65832143 ( 13) TGTGAGAG 1 chr20:30434229-30434249 ( 1) AGTGAAAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGAGAG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 5.67007 E= 5.1e-091 187 -1248 -1248 -270 -1248 -210 175 -1248 185 -1248 -1248 -211 -1248 -1248 182 -1248 179 -210 -400 -370 -291 -369 175 -1248 193 -1248 -1248 -1248 -1248 -1248 182 -1248 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGAGAG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 57 E= 5.1e-091 0.964912 0.000000 0.000000 0.035088 0.000000 0.052632 0.947368 0.000000 0.947368 0.000000 0.000000 0.052632 0.000000 0.000000 1.000000 0.000000 0.912281 0.052632 0.017544 0.017544 0.035088 0.017544 0.947368 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGAGAG MEME-3 regular expression -------------------------------------------------------------------------------- AGAGAGAG -------------------------------------------------------------------------------- Time 3.54 secs. ******************************************************************************** ******************************************************************************** MOTIF CTCTCTCT MEME-4 width = 8 sites = 37 llr = 390 E-value = 3.4e-069 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTCTCTCT MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 9:a:9:a: probability G :::::::: matrix T 1a:a1a:9 bits 2.1 ** 1.9 ****** 1.7 ******* 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (15.2 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTCTCTCT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTCTCT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr8:120082681-120082701 5 7.05e-06 ctcg ctctctct ctctctct chr5:33836035-33836055 3 7.05e-06 ct ctctctct ctctctctct chr20:61732933-61732953 13 7.05e-06 ctctctctcc ctctctct chr22:33599058-33599078 3 7.05e-06 ct ctctctct ctctctctct chr2:198238768-198238788 5 7.05e-06 ctct ctctctct ctctctct chr6:143141435-143141455 5 7.05e-06 ctct ctctctct ctctctct chr8:129325555-129325575 3 7.05e-06 ct ctctctct ctctctctct chr14:60798038-60798058 2 7.05e-06 t ctctctct ctctctctct chr10:63383642-63383662 9 7.05e-06 ctctctct ctctctct ctca chr1:199498644-199498664 4 7.05e-06 tcc ctctctct ctctctctc chr5:158477171-158477191 9 7.05e-06 ctctctct ctctctct cttc chr1:207997393-207997413 2 7.05e-06 t ctctctct ctctctctct chr11:107734980-10773500 4 7.05e-06 tct ctctctct ctctctctc chrX:114828932-114828952 11 7.05e-06 GCctctctct ctctctct cc chr3:164914713-164914733 13 7.05e-06 ctctctctgt ctctctct chrX:129086774-129086794 3 7.05e-06 ct ctctctct ctctctctct chr1:31807157-31807177 1 7.05e-06 . ctctctct ctctctctct chr10:18647446-18647466 1 7.05e-06 . ctctctct ctctctctct chr2:43274006-43274026 2 7.05e-06 t ctctctct ctctctctct chr17:46755332-46755352 3 7.05e-06 ct ctctctct ctctctctct chr2:198920020-198920040 1 7.05e-06 . ctctctct ctctctctct chr14:71347854-71347874 2 7.05e-06 t ctctctct ctctctctct chr4:144299792-144299812 12 7.05e-06 ctctctctct ctctctct c chr14:68623173-68623193 1 7.05e-06 . ctctctct ctctctctct chr15:70308489-70308509 3 7.05e-06 ct ctctctct ctctctctct chr3:138328382-138328402 4 7.05e-06 tct ctctctct ctctctctc chr6:12104599-12104619 12 1.42e-05 ctctctctct ttctctct c chr20:62362271-62362291 3 1.42e-05 ca ttctctct ctctctctct chr9:23850726-23850746 1 1.42e-05 . ttctctct ctctctctct chrX:135755985-135756005 4 2.13e-05 tct ctctttct ctctctctc chr2:145268269-145268289 12 2.13e-05 ctctctctct ctctttct c chr13:24845131-24845151 10 2.83e-05 tctctctct ctctctcc act chr7:137530877-137530897 1 4.42e-05 . ctttctct ctctctctct chr3:57051031-57051051 2 4.42e-05 t gtctctct ctctctctct chr11:131760072-13176009 10 5.23e-05 tctctctct ctctctcA CAC chr10:110654335-11065435 12 6.97e-05 ctctctcact ctcgctct c chr8:101844764-101844784 13 1.17e-04 ctctctttat tgctctct -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTCTCT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr8:120082681-120082701 7e-06 4_[+4]_8 chr5:33836035-33836055 7e-06 2_[+4]_10 chr20:61732933-61732953 7e-06 12_[+4] chr22:33599058-33599078 7e-06 2_[+4]_10 chr2:198238768-198238788 7e-06 4_[+4]_8 chr6:143141435-143141455 7e-06 4_[+4]_8 chr8:129325555-129325575 7e-06 2_[+4]_10 chr14:60798038-60798058 7e-06 1_[+4]_11 chr10:63383642-63383662 7e-06 8_[+4]_4 chr1:199498644-199498664 7e-06 3_[+4]_9 chr5:158477171-158477191 7e-06 8_[+4]_4 chr1:207997393-207997413 7e-06 1_[+4]_11 chr11:107734980-10773500 7e-06 3_[+4]_9 chrX:114828932-114828952 7e-06 10_[+4]_2 chr3:164914713-164914733 7e-06 12_[+4] chrX:129086774-129086794 7e-06 2_[+4]_10 chr1:31807157-31807177 7e-06 [+4]_12 chr10:18647446-18647466 7e-06 [+4]_12 chr2:43274006-43274026 7e-06 1_[+4]_11 chr17:46755332-46755352 7e-06 2_[+4]_10 chr2:198920020-198920040 7e-06 [+4]_12 chr14:71347854-71347874 7e-06 1_[+4]_11 chr4:144299792-144299812 7e-06 11_[+4]_1 chr14:68623173-68623193 7e-06 [+4]_12 chr15:70308489-70308509 7e-06 2_[+4]_10 chr3:138328382-138328402 7e-06 3_[+4]_9 chr6:12104599-12104619 1.4e-05 11_[+4]_1 chr20:62362271-62362291 1.4e-05 2_[+4]_10 chr9:23850726-23850746 1.4e-05 [+4]_12 chrX:135755985-135756005 2.1e-05 3_[+4]_9 chr2:145268269-145268289 2.1e-05 11_[+4]_1 chr13:24845131-24845151 2.8e-05 9_[+4]_3 chr7:137530877-137530897 4.4e-05 [+4]_12 chr3:57051031-57051051 4.4e-05 1_[+4]_11 chr11:131760072-13176009 5.2e-05 9_[+4]_3 chr10:110654335-11065435 7e-05 11_[+4]_1 chr8:101844764-101844784 0.00012 12_[+4] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTCTCT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTCTCTCT width=8 seqs=37 chr8:120082681-120082701 ( 5) CTCTCTCT 1 chr5:33836035-33836055 ( 3) CTCTCTCT 1 chr20:61732933-61732953 ( 13) CTCTCTCT 1 chr22:33599058-33599078 ( 3) CTCTCTCT 1 chr2:198238768-198238788 ( 5) CTCTCTCT 1 chr6:143141435-143141455 ( 5) CTCTCTCT 1 chr8:129325555-129325575 ( 3) CTCTCTCT 1 chr14:60798038-60798058 ( 2) CTCTCTCT 1 chr10:63383642-63383662 ( 9) CTCTCTCT 1 chr1:199498644-199498664 ( 4) CTCTCTCT 1 chr5:158477171-158477191 ( 9) CTCTCTCT 1 chr1:207997393-207997413 ( 2) CTCTCTCT 1 chr11:107734980-10773500 ( 4) CTCTCTCT 1 chrX:114828932-114828952 ( 11) CTCTCTCT 1 chr3:164914713-164914733 ( 13) CTCTCTCT 1 chrX:129086774-129086794 ( 3) CTCTCTCT 1 chr1:31807157-31807177 ( 1) CTCTCTCT 1 chr10:18647446-18647466 ( 1) CTCTCTCT 1 chr2:43274006-43274026 ( 2) CTCTCTCT 1 chr17:46755332-46755352 ( 3) CTCTCTCT 1 chr2:198920020-198920040 ( 1) CTCTCTCT 1 chr14:71347854-71347874 ( 2) CTCTCTCT 1 chr4:144299792-144299812 ( 12) CTCTCTCT 1 chr14:68623173-68623193 ( 1) CTCTCTCT 1 chr15:70308489-70308509 ( 3) CTCTCTCT 1 chr3:138328382-138328402 ( 4) CTCTCTCT 1 chr6:12104599-12104619 ( 12) TTCTCTCT 1 chr20:62362271-62362291 ( 3) TTCTCTCT 1 chr9:23850726-23850746 ( 1) TTCTCTCT 1 chrX:135755985-135756005 ( 4) CTCTTTCT 1 chr2:145268269-145268289 ( 12) CTCTTTCT 1 chr13:24845131-24845151 ( 10) CTCTCTCC 1 chr7:137530877-137530897 ( 1) CTTTCTCT 1 chr3:57051031-57051051 ( 2) GTCTCTCT 1 chr11:131760072-13176009 ( 10) CTCTCTCA 1 chr10:110654335-11065435 ( 12) CTCGCTCT 1 chr8:101844764-101844784 ( 13) TGCTCTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTCTCT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.25552 E= 3.4e-069 -1185 193 -338 -108 -1185 -1185 -338 209 -1185 210 -1185 -307 -1185 -1185 -338 209 -1185 206 -1185 -208 -1185 -1185 -1185 213 -1185 214 -1185 -1185 -328 -306 -1185 205 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTCTCT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 37 E= 3.4e-069 0.000000 0.864865 0.027027 0.108108 0.000000 0.000000 0.027027 0.972973 0.000000 0.972973 0.000000 0.027027 0.000000 0.000000 0.027027 0.972973 0.000000 0.945946 0.000000 0.054054 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.027027 0.027027 0.000000 0.945946 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTCTCT MEME-4 regular expression -------------------------------------------------------------------------------- CTCTCTCT -------------------------------------------------------------------------------- Time 4.17 secs. ******************************************************************************** ******************************************************************************** MOTIF GTGTGTGT MEME-5 width = 8 sites = 14 llr = 147 E-value = 6.3e-013 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGTGTGT MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 1::::::: probability G 9:9:a:a: matrix T :a1a:a:a bits 2.1 * * * * 1.9 * ***** 1.7 * ***** 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (15.1 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GTGTGTGT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:119149521-119149541 1 1.71e-05 . gtgtgtgt gtgACagaga chr4:119811901-119811921 3 1.71e-05 gt gtgtgtgt AGGGAGAGAG chr12:93579491-93579511 9 1.71e-05 GAGATAGG gtgtgtgt gtgt chr15:49714340-49714360 11 1.71e-05 gagtgtgtgt gtgtgtgt gt chr2:221996859-221996879 2 1.71e-05 t gtgtgtgt gtgtgtgtgt chr21:47066046-47066066 7 1.71e-05 gtgtgt gtgtgtgt TTTGGG chr1:89529914-89529934 2 1.71e-05 t gtgtgtgt gagagagaga chr1:226899151-226899171 11 1.71e-05 gtgtgtgtgt gtgtgtgt tg chr6:157177778-157177798 8 1.71e-05 ACATCCT GTGTGTGT GGGCA chr6:75917905-75917925 13 1.71e-05 gtgtgtgtgt gtgtgtgt chr2:65832123-65832143 2 1.71e-05 t gtgtgtgt gtgtgtgaga chr1:97991333-97991353 13 1.71e-05 gagagagaga gTGTGTGT chr10:30061953-30061973 6 4.46e-05 AAGAA GTTTGTGT CCCAAAC chr1:208260312-208260332 12 4.46e-05 ctctctctct ctGTGTGT G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:119149521-119149541 1.7e-05 [+5]_12 chr4:119811901-119811921 1.7e-05 2_[+5]_10 chr12:93579491-93579511 1.7e-05 8_[+5]_4 chr15:49714340-49714360 1.7e-05 10_[+5]_2 chr2:221996859-221996879 1.7e-05 1_[+5]_11 chr21:47066046-47066066 1.7e-05 6_[+5]_6 chr1:89529914-89529934 1.7e-05 1_[+5]_11 chr1:226899151-226899171 1.7e-05 10_[+5]_2 chr6:157177778-157177798 1.7e-05 7_[+5]_5 chr6:75917905-75917925 1.7e-05 12_[+5] chr2:65832123-65832143 1.7e-05 1_[+5]_11 chr1:97991333-97991353 1.7e-05 12_[+5] chr10:30061953-30061973 4.5e-05 5_[+5]_7 chr1:208260312-208260332 4.5e-05 11_[+5]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGTGTGT width=8 seqs=14 chrX:119149521-119149541 ( 1) GTGTGTGT 1 chr4:119811901-119811921 ( 3) GTGTGTGT 1 chr12:93579491-93579511 ( 9) GTGTGTGT 1 chr15:49714340-49714360 ( 11) GTGTGTGT 1 chr2:221996859-221996879 ( 2) GTGTGTGT 1 chr21:47066046-47066066 ( 7) GTGTGTGT 1 chr1:89529914-89529934 ( 2) GTGTGTGT 1 chr1:226899151-226899171 ( 11) GTGTGTGT 1 chr6:157177778-157177798 ( 8) GTGTGTGT 1 chr6:75917905-75917925 ( 13) GTGTGTGT 1 chr2:65832123-65832143 ( 2) GTGTGTGT 1 chr1:97991333-97991353 ( 13) GTGTGTGT 1 chr10:30061953-30061973 ( 6) GTTTGTGT 1 chr1:208260312-208260332 ( 12) CTGTGTGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.4605 E= 6.3e-013 -1045 -166 172 -1045 -1045 -1045 -1045 213 -1045 -1045 172 -167 -1045 -1045 -1045 213 -1045 -1045 182 -1045 -1045 -1045 -1045 213 -1045 -1045 182 -1045 -1045 -1045 -1045 213 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 6.3e-013 0.000000 0.071429 0.928571 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.928571 0.071429 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGT MEME-5 regular expression -------------------------------------------------------------------------------- GTGTGTGT -------------------------------------------------------------------------------- Time 4.74 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:138328382-138328402 2.19e-05 1_[+2(7.05e-06)]_[+2(7.05e-06)]_3 chr4:155338415-155338435 5.05e-03 20 chr3:114173037-114173057 4.42e-04 [+1(3.03e-05)]_[+1(3.03e-05)]_4 chr10:110654335-11065435 3.85e-04 3_[+2(1.52e-05)]_[+4(6.97e-05)]_1 chr4:160025674-160025694 4.42e-04 2_[+1(6.27e-05)]_2_[+1(3.03e-05)] chr7:30560509-30560529 4.42e-04 1_[+1(3.03e-05)]_[+1(3.03e-05)]_3 chr15:60691233-60691253 4.12e-04 3_[+1(3.03e-05)]_[+1(3.03e-05)]_1 chr6:37665892-37665912 8.26e-01 20 chr15:70308489-70308509 2.19e-05 [+2(7.05e-06)]_[+2(7.05e-06)]_4 chr1:97991333-97991353 4.25e-07 1_[+1(3.03e-05)]_3_[+5(1.71e-05)] chr2:65529253-65529273 4.42e-04 [+1(3.03e-05)]_[+1(3.03e-05)]_4 chr16:46725842-46725862 5.79e-01 20 chr18:11143685-11143705 3.32e-01 20 chr11:64472119-64472139 4.42e-04 [+1(3.03e-05)]_[+1(3.03e-05)]_4 chr15:37390612-37390632 4.42e-04 1_[+1(3.03e-05)]_11 chr8:81076274-81076294 4.42e-04 1_[+1(3.03e-05)]_11 chrX:70474920-70474940 3.33e-01 20 chr10:91053431-91053451 4.23e-04 6_[+1(3.03e-05)]_6 chr1:161706331-161706351 4.42e-04 6_[+1(3.03e-05)]_6 chr14:68623173-68623193 2.19e-05 [+2(7.05e-06)]_[+2(7.05e-06)]_4 chr14:101083790-10108381 4.42e-04 1_[+1(3.03e-05)]_[+1(3.03e-05)]_3 chr11:9696946-9696966 4.42e-04 [+1(3.03e-05)]_[+1(3.03e-05)]_4 chr4:144299792-144299812 2.19e-05 1_[+2(7.05e-06)]_[+2(7.05e-06)]_3 chr20:7999172-7999192 5.39e-01 20 chr4:79550439-79550459 2.61e-01 20 chr1:89487515-89487535 3.02e-02 20 chr7:44885697-44885717 8.57e-02 20 chr2:65832123-65832143 3.92e-04 1_[+5(1.71e-05)]_11 chr16:27296466-27296486 4.42e-04 1_[+1(3.03e-05)]_[+1(3.03e-05)]_3 chr14:71347854-71347874 2.19e-05 1_[+2(7.05e-06)]_[+2(7.05e-06)]_3 chr8:67434047-67434067 4.42e-04 1_[+1(3.03e-05)]_[+1(3.03e-05)]_3 chrX:40653399-40653419 4.42e-04 1_[+1(3.03e-05)]_[+1(3.03e-05)]_3 chr2:158271108-158271128 4.42e-04 1_[+1(3.03e-05)]_[+1(3.03e-05)]_3 chr11:131760072-13176009 1.86e-05 1_[+2(7.05e-06)]_[+2(3.86e-05)]_3 chr9:7052912-7052932 8.98e-01 20 chr17:28498960-28498980 6.57e-01 20 chr2:175464525-175464545 2.19e-05 1_[+2(7.05e-06)]_11 chr7:29235228-29235248 2.20e-04 [+1(3.03e-05)]_[+1(3.03e-05)]_4 chr9:21990613-21990633 4.42e-04 [+1(3.03e-05)]_[+1(3.03e-05)]_4 chr10:60818453-60818473 7.41e-05 [+2(2.23e-05)]_12 chr2:198920020-198920040 2.19e-05 [+2(7.05e-06)]_[+2(7.05e-06)]_4 chrX:106985623-106985643 1.48e-03 3_[+1(6.27e-05)]_9 chr5:110867601-110867621 7.52e-01 20 chr6:18327755-18327775 8.64e-02 20 chrX:139844384-139844404 4.42e-04 [+1(3.03e-05)]_[+1(3.03e-05)]_4 chr17:46755332-46755352 2.19e-05 [+2(7.05e-06)]_[+2(7.05e-06)]_4 chr4:164165362-164165382 4.42e-04 [+1(3.03e-05)]_[+1(3.03e-05)]_4 chr9:109626290-109626310 1.67e-01 20 chr12:66218547-66218567 4.94e-01 20 chr9:100926019-100926039 5.72e-05 5_[+1(3.03e-05)]_7 chr9:23850726-23850746 2.19e-05 2_[+2(7.05e-06)]_[+2(7.05e-06)]_2 chr1:208260312-208260332 2.63e-08 1_[+2(7.05e-06)]_2_[+5(4.46e-05)]_1 chr2:43274006-43274026 2.19e-05 1_[+2(7.05e-06)]_[+2(7.05e-06)]_3 chr14:22926177-22926197 2.19e-05 1_[+2(7.05e-06)]_[+2(7.05e-06)]_3 chr1:59482280-59482300 2.00e-03 2_[+2(1.52e-05)]_10 chr11:128761333-12876135 4.12e-04 3_[+1(3.03e-05)]_[+1(3.03e-05)]_1 chr8:38741332-38741352 2.71e-05 [+1(3.03e-05)]_12 chr13:49067420-49067440 4.07e-01 20 chr11:62421295-62421315 4.42e-04 1_[+1(3.03e-05)]_[+1(3.03e-05)]_3 chrX:23760330-23760350 4.42e-04 1_[+1(3.03e-05)]_[+1(3.03e-05)]_3 chr8:76320507-76320527 1.74e-02 20 chr10:29798275-29798295 4.42e-04 1_[+1(3.03e-05)]_[+1(3.03e-05)]_3 chr4:1874327-1874347 4.42e-04 [+1(3.03e-05)]_[+1(3.03e-05)]_4 chr3:57029669-57029689 4.42e-04 [+1(3.03e-05)]_[+1(3.03e-05)]_4 chr3:136993236-136993256 4.42e-04 5_[+1(3.03e-05)]_7 chr7:150452699-150452719 4.42e-04 [+1(3.03e-05)]_[+1(3.03e-05)]_4 chr18:32993014-32993034 4.42e-04 [+1(3.03e-05)]_[+1(3.03e-05)]_4 chr10:18647446-18647466 2.19e-05 [+2(7.05e-06)]_[+2(7.05e-06)]_4 chr1:31807157-31807177 2.19e-05 [+2(7.05e-06)]_[+2(7.05e-06)]_4 chr3:105473363-105473383 4.42e-04 4_[+1(3.03e-05)]_[+1(3.03e-05)] chr3:43275221-43275241 4.76e-01 20 chr7:83824364-83824384 2.83e-01 20 chrX:129086774-129086794 2.19e-05 [+2(7.05e-06)]_[+2(7.05e-06)]_4 chr3:31258043-31258063 2.11e-01 20 chr6:14877095-14877115 1.10e-05 2_[+2(7.05e-06)]_[+2(7.05e-06)]_2 chr12:2034043-2034063 7.31e-01 20 chr13:24845131-24845151 2.19e-05 1_[+2(7.05e-06)]_[+4(2.83e-05)]_3 chr20:35095333-35095353 5.42e-06 1_[+2(7.05e-06)]_11 chr11:128284444-12828446 3.14e-01 20 chr1:111162716-111162736 4.28e-04 [+1(3.03e-05)]_[+1(9.09e-05)]_4 chr3:164914713-164914733 5.42e-06 2_[+2(7.05e-06)]_2_[+2(7.05e-06)] chr12:46519285-46519305 6.98e-01 20 chr16:46864184-46864204 4.42e-04 [+1(3.03e-05)]_[+1(3.03e-05)]_4 chrX:114828932-114828952 2.19e-05 2_[+2(7.05e-06)]_[+2(7.05e-06)]_2 chr8:73330651-73330671 9.35e-01 20 chr20:61147904-61147924 5.85e-02 20 chr1:33921516-33921536 4.42e-04 [+1(3.03e-05)]_[+1(3.03e-05)]_4 chr12:49616499-49616519 4.42e-04 4_[+1(3.03e-05)]_[+1(3.03e-05)] chr16:9133232-9133252 4.42e-04 1_[+1(3.03e-05)]_[+1(3.03e-05)]_3 chr2:203520435-203520455 4.42e-04 [+1(3.03e-05)]_[+1(3.03e-05)]_4 chr8:71072906-71072926 4.42e-04 [+1(3.03e-05)]_4_[+1(3.03e-05)] chr2:74517788-74517808 2.20e-04 1_[+1(3.03e-05)]_11 chr6:75917905-75917925 2.21e-02 [+5(1.71e-05)]_[+5(1.71e-05)]_4 chr9:108645899-108645919 2.19e-05 1_[+2(7.05e-06)]_2_[+4(2.13e-05)]_1 chr10:30061953-30061973 2.55e-02 5_[+5(4.46e-05)]_7 chr7:74058217-74058237 7.09e-01 20 chr21:25485921-25485941 4.27e-04 6_[+1(3.03e-05)]_6 chr4:129474186-129474206 2.19e-05 1_[+2(7.05e-06)]_[+2(7.05e-06)]_3 chr5:17217179-17217199 4.42e-04 2_[+1(3.03e-05)]_[+1(3.03e-05)]_2 chr6:157177778-157177798 9.70e-03 7_[+5(1.71e-05)]_5 chr1:180992224-180992244 2.19e-05 7_[+2(7.05e-06)]_5 chr1:109656125-109656145 3.24e-01 20 chr5:150439337-150439357 4.42e-04 3_[+1(3.03e-05)]_[+1(3.03e-05)]_1 chr8:58136229-58136249 4.80e-02 20 chr11:128563865-12856388 4.42e-04 [+1(3.03e-05)]_[+1(3.03e-05)]_4 chr3:14726938-14726958 1.17e-05 8_[+2(7.05e-06)]_4 chr1:226899151-226899171 2.21e-02 [+5(1.71e-05)]_[+5(1.71e-05)]_4 chr5:38832135-38832155 1.93e-02 20 chr17:38601216-38601236 4.42e-04 [+1(3.03e-05)]_[+1(3.03e-05)]_4 chr10:44503794-44503814 2.19e-05 6_[+2(7.05e-06)]_6 chr13:74861534-74861554 1.87e-01 20 chr1:161067421-161067441 3.84e-03 [+2(3.04e-05)]_12 chr18:58756177-58756197 4.42e-04 [+1(3.03e-05)]_[+1(3.03e-05)]_4 chr7:43665330-43665350 5.90e-01 20 chr15:44580686-44580706 4.42e-04 6_[+1(3.03e-05)]_6 chrX:80065171-80065191 1.21e-01 20 chr1:156613425-156613445 4.42e-04 2_[+1(3.03e-05)]_[+1(3.03e-05)]_2 chr11:107734980-10773500 2.19e-05 1_[+2(7.05e-06)]_[+2(7.05e-06)]_3 chr9:4600480-4600500 4.42e-04 3_[+1(3.03e-05)]_9 chr4:124697670-124697690 4.42e-04 [+1(3.03e-05)]_[+1(3.03e-05)]_4 chr12:72092438-72092458 7.26e-01 20 chr8:82754785-82754805 4.42e-04 12_[+1(3.03e-05)] chr5:102172567-102172587 4.42e-04 1_[+1(3.03e-05)]_[+1(3.03e-05)]_3 chr6:42230242-42230262 4.42e-04 1_[+1(3.03e-05)]_[+1(3.03e-05)]_3 chr1:207997393-207997413 2.19e-05 1_[+2(7.05e-06)]_[+2(7.05e-06)]_3 chr3:105087085-105087105 4.42e-04 [+1(3.03e-05)]_[+1(3.03e-05)]_4 chr2:85960068-85960088 4.42e-04 [+1(3.03e-05)]_[+1(3.03e-05)]_4 chr10:100538088-10053810 9.35e-01 20 chr2:145268269-145268289 2.19e-05 1_[+2(7.05e-06)]_2_[+4(2.13e-05)]_1 chr12:90052378-90052398 4.42e-04 [+1(3.03e-05)]_[+1(3.03e-05)]_4 chr5:159953909-159953929 2.19e-04 1_[+1(3.03e-05)]_11 chr2:175459382-175459402 8.21e-01 20 chr1:89529914-89529934 4.25e-07 1_[+5(1.71e-05)]_1_[+1(3.03e-05)]_2 chr1:156786877-156786897 4.21e-05 12_[+4(1.42e-05)] chr5:158477171-158477191 2.19e-05 [+2(7.05e-06)]_[+2(7.05e-06)]_4 chrX:78212923-78212943 1.31e-03 10_[+1(9.09e-05)]_2 chr21:47066046-47066066 1.04e-02 [+5(1.71e-05)]_12 chrX:122317975-122317995 2.07e-05 1_[+2(7.05e-06)]_11 chr1:199498644-199498664 2.19e-05 3_[+2(7.05e-06)]_[+2(7.05e-06)]_1 chr18:29665347-29665367 4.42e-04 1_[+1(3.03e-05)]_[+1(3.03e-05)]_3 chr3:57051031-57051051 1.10e-05 3_[+2(7.05e-06)]_[+2(7.05e-06)]_1 chrX:13044212-13044232 4.42e-04 2_[+1(3.03e-05)]_[+1(3.03e-05)]_2 chr10:63383642-63383662 2.19e-05 [+2(7.05e-06)]_[+2(7.05e-06)]_4 chr6:31509630-31509650 4.31e-01 20 chr21:34144268-34144288 4.42e-04 1_[+1(3.03e-05)]_11 chr19:597665-597685 5.62e-01 20 chr5:10508960-10508980 9.96e-01 20 chr5:92917539-92917559 2.19e-05 3_[+2(7.05e-06)]_[+2(7.05e-06)]_1 chr18:29665546-29665566 9.70e-01 20 chr3:165443325-165443345 4.42e-04 1_[+1(3.03e-05)]_11 chr17:65693405-65693425 2.19e-05 6_[+2(7.05e-06)]_6 chr1:92921078-92921098 4.42e-04 1_[+1(3.03e-05)]_[+1(3.03e-05)]_3 chr19:46172232-46172252 3.63e-01 20 chr15:89956091-89956111 4.42e-04 1_[+1(3.03e-05)]_[+1(3.03e-05)]_3 chr20:62362271-62362291 2.19e-05 4_[+2(7.05e-06)]_[+2(7.05e-06)] chr6:115035072-115035092 4.42e-04 [+1(3.03e-05)]_[+1(3.03e-05)]_4 chr5:52152522-52152542 4.42e-04 [+1(3.03e-05)]_[+1(3.03e-05)]_4 chr4:54973607-54973627 4.42e-04 1_[+1(3.03e-05)]_[+1(3.03e-05)]_3 chr14:60798038-60798058 2.19e-05 1_[+2(7.05e-06)]_[+2(7.05e-06)]_3 chrX:114849834-114849854 3.33e-03 1_[+1(9.09e-05)]_11 chr8:129325555-129325575 2.19e-05 [+2(7.05e-06)]_[+2(7.05e-06)]_4 chr14:98604152-98604172 1.32e-02 20 chr2:221996859-221996879 2.21e-02 1_[+5(1.71e-05)]_[+5(1.71e-05)]_3 chr6:12104599-12104619 9.43e-06 1_[+2(7.05e-06)]_2_[+4(1.42e-05)]_1 chr19:55166502-55166522 9.39e-01 20 chr3:121749478-121749498 2.19e-05 1_[+2(7.05e-06)]_[+2(7.05e-06)]_3 chr20:57551776-57551796 9.48e-01 20 chr1:155214641-155214661 4.42e-04 [+1(3.03e-05)]_[+1(3.03e-05)]_4 chr17:5153173-5153193 5.09e-04 12_[+1(3.03e-05)] chr5:95664154-95664174 5.69e-01 20 chr17:57287331-57287351 2.68e-01 20 chr1:184756072-184756092 4.87e-01 20 chr15:49714340-49714360 1.14e-02 2_[+5(1.71e-05)]_[+5(1.71e-05)]_2 chr8:82783064-82783084 1.10e-05 6_[+2(7.05e-06)]_6 chr20:2451291-2451311 8.47e-01 20 chr6:143141435-143141455 2.19e-05 [+2(7.05e-06)]_[+2(7.05e-06)]_4 chr10:114206865-11420688 9.48e-01 20 chr10:71892890-71892910 4.42e-04 [+1(3.03e-05)]_[+1(3.03e-05)]_4 chr19:41816334-41816354 1.85e-01 20 chr12:95158051-95158071 4.42e-04 9_[+1(3.03e-05)]_3 chrX:9979704-9979724 8.10e-01 20 chr22:27044851-27044871 2.20e-04 2_[+1(3.03e-05)]_10 chr8:121457435-121457455 9.25e-01 20 chr13:46774570-46774590 7.13e-01 20 chr12:112847278-11284729 9.27e-01 20 chr20:43239136-43239156 1.27e-02 1_[+2(9.78e-05)]_11 chr9:93862407-93862427 2.19e-05 7_[+2(7.05e-06)]_5 chr4:54358640-54358660 6.69e-02 20 chr11:72436301-72436321 3.85e-05 6_[+2(2.23e-05)]_6 chr1:44679076-44679096 9.68e-01 20 chr17:47946254-47946274 3.03e-06 8_[+2(7.05e-06)]_4 chr2:3622772-3622792 7.87e-01 20 chr2:224822138-224822158 9.91e-01 20 chr7:137530877-137530897 9.43e-06 4_[+2(7.05e-06)]_[+2(7.05e-06)] chr15:68222758-68222778 8.53e-01 20 chr2:198238768-198238788 2.19e-05 [+2(7.05e-06)]_[+2(7.05e-06)]_4 chr5:38832339-38832359 8.12e-01 20 chr15:89748421-89748441 1.94e-03 4_[+2(3.04e-05)]_8 chrX:119443539-119443559 7.58e-04 1_[+2(6.26e-05)]_11 chr22:33599058-33599078 2.19e-05 [+2(7.05e-06)]_[+2(7.05e-06)]_4 chr11:64863582-64863602 8.65e-01 20 chr2:27886703-27886723 5.80e-01 20 chr11:82393547-82393567 4.42e-04 5_[+1(3.03e-05)]_7 chr6:18749785-18749805 4.73e-01 20 chr5:19935911-19935931 2.19e-05 1_[+2(7.05e-06)]_[+2(7.05e-06)]_3 chr13:28555146-28555166 2.19e-05 [+2(7.05e-06)]_[+2(7.05e-06)]_4 chr12:109915317-10991533 3.25e-02 20 chr20:61732933-61732953 2.19e-05 [+2(7.05e-06)]_4_[+2(7.05e-06)] chr10:53459425-53459445 7.20e-01 20 chr8:101844764-101844784 6.54e-04 2_[+2(5.39e-05)]_10 chr11:111944836-11194485 7.83e-02 20 chr12:93579491-93579511 2.67e-03 8_[+5(1.71e-05)]_4 chr1:147012908-147012928 4.42e-04 [+1(3.03e-05)]_2_[+1(3.03e-05)]_2 chr4:119811901-119811921 2.01e-05 [+5(1.71e-05)]_2_[+1(6.27e-05)]_2 chr1:31538384-31538404 9.77e-01 20 chr15:49447920-49447940 6.64e-01 20 chr19:51523451-51523471 4.42e-04 3_[+1(3.03e-05)]_[+1(3.03e-05)]_1 chr15:37392419-37392439 7.74e-01 20 chr19:50083973-50083993 9.43e-01 20 chr4:106629886-106629906 4.03e-01 20 chr2:201936644-201936664 4.47e-01 20 chr17:72292532-72292552 3.98e-03 [+1(9.09e-05)]_12 chr2:64927706-64927726 2.74e-01 20 chr10:49509620-49509640 2.19e-05 1_[+2(7.05e-06)]_[+2(7.05e-06)]_3 chr19:1383834-1383854 4.26e-01 20 chr16:58970765-58970785 4.42e-04 4_[+1(3.03e-05)]_[+1(3.03e-05)] chr19:47924174-47924194 6.57e-01 20 chr1:63989021-63989041 1.75e-01 20 chr20:30434229-30434249 1.27e-01 20 chr4:106819501-106819521 2.19e-05 1_[+2(7.05e-06)]_[+2(7.05e-06)]_3 chr19:45186323-45186343 2.19e-05 4_[+2(7.05e-06)]_[+2(7.05e-06)] chr5:64071886-64071906 4.39e-04 10_[+1(3.03e-05)]_2 chrX:119149521-119149541 4.43e-06 [+5(1.71e-05)]_12 chr3:157824336-157824356 1.37e-01 20 chr19:14385677-14385697 4.42e-04 1_[+1(3.03e-05)]_[+1(3.03e-05)]_3 chr12:1116610-1116630 1.51e-01 20 chr20:34824318-34824338 6.95e-01 20 chr5:33836035-33836055 2.19e-05 [+2(7.05e-06)]_[+2(7.05e-06)]_4 chr17:80231452-80231472 9.72e-01 20 chr8:120082681-120082701 2.19e-05 4_[+2(7.05e-06)]_[+2(7.05e-06)] chr4:113783025-113783045 9.58e-04 1_[+2(9.78e-05)]_11 chr20:52489677-52489697 7.87e-01 20 chr5:74062977-74062997 9.00e-01 20 chr3:197677165-197677185 5.92e-01 20 chr1:37656379-37656399 2.88e-01 20 chrX:135755985-135756005 9.43e-06 9_[+2(7.05e-06)]_3 chrX:1008410-1008430 1.32e-01 20 chr3:12882925-12882945 8.24e-01 20 chr16:17347729-17347749 8.06e-01 20 chrX:71792880-71792900 3.08e-01 20 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n05.farnam.hpc.yale.internal ********************************************************************************