******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/ZSCAN29.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr17:1389390-1389410 1.0000 20 chr3:138553182-138553202 1.0000 20 chr22:42764707-42764727 1.0000 20 chr3:182698687-182698707 1.0000 20 chr1:236228359-236228379 1.0000 20 chr21:36042198-36042218 1.0000 20 chr17:46688031-46688051 1.0000 20 chr4:94255407-94255427 1.0000 20 chr7:26192735-26192755 1.0000 20 chr1:215757960-215757980 1.0000 20 chr1:221816927-221816947 1.0000 20 chr11:67038845-67038865 1.0000 20 chr16:9053920-9053940 1.0000 20 chr19:36500314-36500334 1.0000 20 chr14:107259936-10725995 1.0000 20 chr19:50037487-50037507 1.0000 20 chr17:60556304-60556324 1.0000 20 chr5:140792556-140792576 1.0000 20 chr12:54476065-54476085 1.0000 20 chr12:103349931-10334995 1.0000 20 chr16:84537847-84537867 1.0000 20 chr2:175546937-175546957 1.0000 20 chr14:92980606-92980626 1.0000 20 chr6:26600045-26600065 1.0000 20 chr17:46801210-46801230 1.0000 20 chr16:2524072-2524092 1.0000 20 chr4:77872373-77872393 1.0000 20 chr18:8608883-8608903 1.0000 20 chr21:42792123-42792143 1.0000 20 chr18:12307569-12307589 1.0000 20 chr2:95522817-95522837 1.0000 20 chr7:116963787-116963807 1.0000 20 chr10:30791330-30791350 1.0000 20 chr11:10878413-10878433 1.0000 20 chr12:93771321-93771341 1.0000 20 chr6:41513388-41513408 1.0000 20 chr7:33102299-33102319 1.0000 20 chr12:42983066-42983086 1.0000 20 chr18:77344633-77344653 1.0000 20 chr12:122984763-12298478 1.0000 20 chr18:18690781-18690801 1.0000 20 chr9:139621354-139621374 1.0000 20 chr2:70018339-70018359 1.0000 20 chr1:45969428-45969448 1.0000 20 chr17:38948247-38948267 1.0000 20 chr1:31896368-31896388 1.0000 20 chr9:6758807-6758827 1.0000 20 chr16:46724013-46724033 1.0000 20 chr9:139581372-139581392 1.0000 20 chr2:239067970-239067990 1.0000 20 chr9:92220405-92220425 1.0000 20 chr13:20439008-20439028 1.0000 20 chr11:66045480-66045500 1.0000 20 chr8:3964344-3964364 1.0000 20 chr7:128580217-128580237 1.0000 20 chr19:18403104-18403124 1.0000 20 chr12:44097716-44097736 1.0000 20 chr1:94146400-94146420 1.0000 20 chr14:22974485-22974505 1.0000 20 chr7:128171527-128171547 1.0000 20 chr17:70114003-70114023 1.0000 20 chr12:2903716-2903736 1.0000 20 chr12:103572663-10357268 1.0000 20 chr11:82905478-82905498 1.0000 20 chr13:24040907-24040927 1.0000 20 chr4:22692453-22692473 1.0000 20 chr14:61855036-61855056 1.0000 20 chr14:102991660-10299168 1.0000 20 chr1:26126450-26126470 1.0000 20 chr15:37103112-37103132 1.0000 20 chr4:26206113-26206133 1.0000 20 chr19:52800806-52800826 1.0000 20 chr7:30325602-30325622 1.0000 20 chr8:67045131-67045151 1.0000 20 chr1:31635774-31635794 1.0000 20 chr22:23634769-23634789 1.0000 20 chr6:53512350-53512370 1.0000 20 chr2:171627941-171627961 1.0000 20 chr2:145273611-145273631 1.0000 20 chr1:934571-934591 1.0000 20 chr4:53567596-53567616 1.0000 20 chr5:78219308-78219328 1.0000 20 chr12:131091000-13109102 1.0000 20 chr19:15442967-15442987 1.0000 20 chr3:156392882-156392902 1.0000 20 chr4:10458948-10458968 1.0000 20 chr12:9885596-9885616 1.0000 20 chr3:58186729-58186749 1.0000 20 chr3:184231633-184231653 1.0000 20 chr6:160113922-160113942 1.0000 20 chr16:75018412-75018432 1.0000 20 chr12:4382081-4382101 1.0000 20 chr1:24126298-24126318 1.0000 20 chr6:134495302-134495322 1.0000 20 chrX:7065849-7065869 1.0000 20 chr14:105940856-10594087 1.0000 20 chr20:43281059-43281079 1.0000 20 chr10:88295520-88295540 1.0000 20 chr14:71787826-71787846 1.0000 20 chr5:95069011-95069031 1.0000 20 chr6:74020007-74020027 1.0000 20 chr10:112432080-11243210 1.0000 20 chr14:51298343-51298363 1.0000 20 chr5:78141533-78141553 1.0000 20 chr10:60026271-60026291 1.0000 20 chr11:13068920-13068940 1.0000 20 chr4:86699633-86699653 1.0000 20 chr6:27722111-27722131 1.0000 20 chr1:110753670-110753690 1.0000 20 chr7:43094836-43094856 1.0000 20 chr1:19835587-19835607 1.0000 20 chr3:89163790-89163810 1.0000 20 chr22:50355462-50355482 1.0000 20 chr6:22375362-22375382 1.0000 20 chr6:37139229-37139249 1.0000 20 chr1:33726197-33726217 1.0000 20 chr22:43485148-43485168 1.0000 20 chr20:49186179-49186199 1.0000 20 chr6:78258062-78258082 1.0000 20 chr1:40137719-40137739 1.0000 20 chr12:106695792-10669581 1.0000 20 chr4:48782185-48782205 1.0000 20 chr11:58979864-58979884 1.0000 20 chr10:120966356-12096637 1.0000 20 chrX:111922676-111922696 1.0000 20 chr2:86093083-86093103 1.0000 20 chr19:267361-267381 1.0000 20 chr8:105286667-105286687 1.0000 20 chr6:125513581-125513601 1.0000 20 chrX:154493789-154493809 1.0000 20 chr10:95242164-95242184 1.0000 20 chr6:109006266-109006286 1.0000 20 chr20:57463755-57463775 1.0000 20 chr19:926117-926137 1.0000 20 chr6:111196579-111196599 1.0000 20 chr2:61404249-61404269 1.0000 20 chr16:22218424-22218444 1.0000 20 chr12:95868532-95868552 1.0000 20 chr18:60319416-60319436 1.0000 20 chr12:9791349-9791369 1.0000 20 chr12:56334184-56334204 1.0000 20 chr6:27470808-27470828 1.0000 20 chr9:127532045-127532065 1.0000 20 chr13:42980610-42980630 1.0000 20 chr1:52498677-52498697 1.0000 20 chr15:79232308-79232328 1.0000 20 chr2:120399394-120399414 1.0000 20 chr10:17269829-17269849 1.0000 20 chr2:174904660-174904680 1.0000 20 chr9:33560403-33560423 1.0000 20 chr5:32173615-32173635 1.0000 20 chr15:97687266-97687286 1.0000 20 chrX:68048864-68048884 1.0000 20 chr2:27308673-27308693 1.0000 20 chr6:26327854-26327874 1.0000 20 chr6:153531380-153531400 1.0000 20 chr9:140720254-140720274 1.0000 20 chr12:498032-498052 1.0000 20 chr3:15373922-15373942 1.0000 20 chr1:221914372-221914392 1.0000 20 chr17:8125577-8125597 1.0000 20 chr12:132379269-13237928 1.0000 20 chr22:30685592-30685612 1.0000 20 chr7:10979067-10979087 1.0000 20 chr6:86159145-86159165 1.0000 20 chr6:3118722-3118742 1.0000 20 chr1:50798840-50798860 1.0000 20 chr7:100487563-100487583 1.0000 20 chr12:12857115-12857135 1.0000 20 chr6:26553739-26553759 1.0000 20 chr12:133136728-13313674 1.0000 20 chr2:216197967-216197987 1.0000 20 chr3:105088391-105088411 1.0000 20 chr14:53258187-53258207 1.0000 20 chr19:42379690-42379710 1.0000 20 chr6:74230143-74230163 1.0000 20 chr10:125343353-12534337 1.0000 20 chr13:20531631-20531651 1.0000 20 chr16:30884886-30884906 1.0000 20 chr11:57335668-57335688 1.0000 20 chr19:17798701-17798721 1.0000 20 chr8:86089959-86089979 1.0000 20 chr5:17225039-17225059 1.0000 20 chr8:103424195-103424215 1.0000 20 chr5:131977028-131977048 1.0000 20 chr1:247531404-247531424 1.0000 20 chr8:22224860-22224880 1.0000 20 chr7:24935772-24935792 1.0000 20 chr19:8274720-8274740 1.0000 20 chr5:112257969-112257989 1.0000 20 chr10:50261662-50261682 1.0000 20 chr10:35012852-35012872 1.0000 20 chr20:42067370-42067390 1.0000 20 chrX:15901389-15901409 1.0000 20 chr21:37694127-37694147 1.0000 20 chr1:43919635-43919655 1.0000 20 chr15:88723072-88723092 1.0000 20 chr10:124740396-12474041 1.0000 20 chr17:70112546-70112566 1.0000 20 chr16:30103569-30103589 1.0000 20 chr8:48290238-48290258 1.0000 20 chr1:178695448-178695468 1.0000 20 chr3:150127667-150127687 1.0000 20 chr11:77851226-77851246 1.0000 20 chr6:28908888-28908908 1.0000 20 chr14:21093616-21093636 1.0000 20 chr1:59248220-59248240 1.0000 20 chrX:24168016-24168036 1.0000 20 chr11:62693441-62693461 1.0000 20 chr1:935464-935484 1.0000 20 chr9:2242011-2242031 1.0000 20 chr3:81042833-81042853 1.0000 20 chr7:87831831-87831851 1.0000 20 chr2:113448557-113448577 1.0000 20 chr19:16772590-16772610 1.0000 20 chr8:27685338-27685358 1.0000 20 chr17:73031260-73031280 1.0000 20 chr3:118296095-118296115 1.0000 20 chr4:38784614-38784634 1.0000 20 chr6:72076158-72076178 1.0000 20 chr3:181651047-181651067 1.0000 20 chr17:1390564-1390584 1.0000 20 chr1:221952179-221952199 1.0000 20 chr6:34204958-34204978 1.0000 20 chr14:21101257-21101277 1.0000 20 chr12:56615946-56615966 1.0000 20 chr2:44408937-44408957 1.0000 20 chr3:189373543-189373563 1.0000 20 chr20:5058848-5058868 1.0000 20 chr2:57776903-57776923 1.0000 20 chr3:185653119-185653139 1.0000 20 chr7:92077547-92077567 1.0000 20 chr17:16873806-16873826 1.0000 20 chr6:146056342-146056362 1.0000 20 chr5:17223659-17223679 1.0000 20 chr19:16739608-16739628 1.0000 20 chr10:27541790-27541810 1.0000 20 chr1:201619428-201619448 1.0000 20 chr6:155507433-155507453 1.0000 20 chr7:17338604-17338624 1.0000 20 chr7:139478466-139478486 1.0000 20 chr6:5278485-5278505 1.0000 20 chr2:231276528-231276548 1.0000 20 chr19:17797469-17797489 1.0000 20 chr14:71597571-71597591 1.0000 20 chr19:40932251-40932271 1.0000 20 chr20:62371760-62371780 1.0000 20 chr9:124855299-124855319 1.0000 20 chr2:25737248-25737268 1.0000 20 chr11:60674342-60674362 1.0000 20 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/GM12878/inference_raw/MEME/RankLinear0.6_10_ZSCAN29/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/ZSCAN29.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 5000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 5000 norand= no csites= 1000 Letter frequencies in dataset: A 0.202 C 0.282 G 0.285 T 0.23 Background letter frequencies (from file dataset with add-one prior applied): A 0.202 C 0.282 G 0.285 T 0.23 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GTGTAGAC MEME-1 width = 8 sites = 25 llr = 210 E-value = 1.3e-014 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGTAGAC MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::2:a:a: pos.-specific C :32::3:9 probability G a:6::7:: matrix T :7:a:::1 bits 2.3 * 2.1 * * 1.8 * ** * 1.6 * ** * Relative 1.4 * ** ** Entropy 1.2 ** ** ** (12.1 bits) 0.9 ** ***** 0.7 ** ***** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GTGTAGAC consensus CC C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTAGAC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr13:20531631-20531651 6 1.41e-05 CGTAG GTGTAGAC GAGGAAC chr11:58979864-58979884 2 1.41e-05 T GTGTAGAC GAGGTTTCTT chr12:106695792-10669581 10 1.41e-05 TATGTGGAG GTGTAGAC GCA chr1:31635774-31635794 6 1.41e-05 AGATT GTGTAGAC AGGGAAG chr9:139581372-139581392 2 1.41e-05 G GTGTAGAC GCCCGGGGCC chr12:12857115-12857135 9 5.20e-05 ACTTGACT GTATAGAC AACT chr16:22218424-22218444 9 5.20e-05 CCAGGACT GTATAGAC GCGC chr11:60674342-60674362 7 6.92e-05 ggGTCT GCGTAGAC AGACTG chr1:59248220-59248240 11 6.92e-05 GCTGAGGTTT GCGTAGAC CG chr2:216197967-216197987 10 6.92e-05 AAATGTGCT GCGTAGAC TGG chr10:120966356-12096637 2 6.92e-05 C GCGTAGAc cccgcgccgc chr12:9885596-9885616 8 6.92e-05 GATGTCA GCGTAGAC TACAT chr1:934571-934591 13 6.92e-05 CGGGCGGCCC GCGTAGAC chr7:139478466-139478486 9 9.29e-05 CTCCTCGC GTCTACAC TGTC chr10:35012852-35012872 11 9.29e-05 TTGAGTTCTC GTCTACAC TT chr3:105088391-105088411 10 9.29e-05 AGGCGCCGT GTCTACAC TGA chr1:221914372-221914392 10 9.29e-05 TTCTCATCC GTCTACAC ACG chr2:61404249-61404269 8 9.29e-05 GTGTCGC GTCTACAC TGCCG chr18:77344633-77344653 3 9.29e-05 TC GTCTACAC AGCACTCCCT chr3:181651047-181651067 6 1.39e-04 TGCCT GCATAGAC TAGTGAA chr7:10979067-10979087 2 1.39e-04 T GCATAGAC TTTTAGCTCT chr20:49186179-49186199 8 1.51e-04 CTGTCCT GTGTAGAT TGTCT chr11:82905478-82905498 5 1.92e-04 GGCA GTGAAGAC GCCAGCTA chr6:72076158-72076178 13 2.23e-04 ATTTGGTGTT GTGTACAT chr6:27470808-27470828 8 2.53e-04 TGATTCT GTgtagtc gtggc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTAGAC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr13:20531631-20531651 1.4e-05 5_[+1]_7 chr11:58979864-58979884 1.4e-05 1_[+1]_11 chr12:106695792-10669581 1.4e-05 9_[+1]_3 chr1:31635774-31635794 1.4e-05 5_[+1]_7 chr9:139581372-139581392 1.4e-05 1_[+1]_11 chr12:12857115-12857135 5.2e-05 8_[+1]_4 chr16:22218424-22218444 5.2e-05 8_[+1]_4 chr11:60674342-60674362 6.9e-05 6_[+1]_6 chr1:59248220-59248240 6.9e-05 10_[+1]_2 chr2:216197967-216197987 6.9e-05 9_[+1]_3 chr10:120966356-12096637 6.9e-05 1_[+1]_11 chr12:9885596-9885616 6.9e-05 7_[+1]_5 chr1:934571-934591 6.9e-05 12_[+1] chr7:139478466-139478486 9.3e-05 8_[+1]_4 chr10:35012852-35012872 9.3e-05 10_[+1]_2 chr3:105088391-105088411 9.3e-05 9_[+1]_3 chr1:221914372-221914392 9.3e-05 9_[+1]_3 chr2:61404249-61404269 9.3e-05 7_[+1]_5 chr18:77344633-77344653 9.3e-05 2_[+1]_10 chr3:181651047-181651067 0.00014 5_[+1]_7 chr7:10979067-10979087 0.00014 1_[+1]_11 chr20:49186179-49186199 0.00015 7_[+1]_5 chr11:82905478-82905498 0.00019 4_[+1]_8 chr6:72076158-72076178 0.00022 12_[+1] chr6:27470808-27470828 0.00025 7_[+1]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTAGAC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGTAGAC width=8 seqs=25 chr13:20531631-20531651 ( 6) GTGTAGAC 1 chr11:58979864-58979884 ( 2) GTGTAGAC 1 chr12:106695792-10669581 ( 10) GTGTAGAC 1 chr1:31635774-31635794 ( 6) GTGTAGAC 1 chr9:139581372-139581392 ( 2) GTGTAGAC 1 chr12:12857115-12857135 ( 9) GTATAGAC 1 chr16:22218424-22218444 ( 9) GTATAGAC 1 chr11:60674342-60674362 ( 7) GCGTAGAC 1 chr1:59248220-59248240 ( 11) GCGTAGAC 1 chr2:216197967-216197987 ( 10) GCGTAGAC 1 chr10:120966356-12096637 ( 2) GCGTAGAC 1 chr12:9885596-9885616 ( 8) GCGTAGAC 1 chr1:934571-934591 ( 13) GCGTAGAC 1 chr7:139478466-139478486 ( 9) GTCTACAC 1 chr10:35012852-35012872 ( 11) GTCTACAC 1 chr3:105088391-105088411 ( 10) GTCTACAC 1 chr1:221914372-221914392 ( 10) GTCTACAC 1 chr2:61404249-61404269 ( 8) GTCTACAC 1 chr18:77344633-77344653 ( 3) GTCTACAC 1 chr3:181651047-181651067 ( 6) GCATAGAC 1 chr7:10979067-10979087 ( 2) GCATAGAC 1 chr20:49186179-49186199 ( 8) GTGTAGAT 1 chr11:82905478-82905498 ( 5) GTGAAGAC 1 chr6:72076158-72076178 ( 13) GTGTACAT 1 chr6:27470808-27470828 ( 8) GTGTAGTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTAGAC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 7.5045 E= 1.3e-014 -1129 -1129 181 -1129 -1129 18 -1129 156 -34 -23 107 -1129 -234 -1129 -1129 206 230 -1129 -1129 -1129 -1129 -1 134 -1129 225 -1129 -1129 -252 -1129 170 -1129 -153 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTAGAC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 25 E= 1.3e-014 0.000000 0.000000 1.000000 0.000000 0.000000 0.320000 0.000000 0.680000 0.160000 0.240000 0.600000 0.000000 0.040000 0.000000 0.000000 0.960000 1.000000 0.000000 0.000000 0.000000 0.000000 0.280000 0.720000 0.000000 0.960000 0.000000 0.000000 0.040000 0.000000 0.920000 0.000000 0.080000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTAGAC MEME-1 regular expression -------------------------------------------------------------------------------- G[TC][GC]TA[GC]AC -------------------------------------------------------------------------------- Time 2.61 secs. ******************************************************************************** ******************************************************************************** MOTIF CCGGATTC MEME-2 width = 8 sites = 15 llr = 125 E-value = 1.5e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCGGATTC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :1:27:1: pos.-specific C 98::1:1a probability G 1:a8:::: matrix T :1::2a9: bits 2.3 2.1 * 1.8 * * * 1.6 * * * Relative 1.4 * * *** Entropy 1.2 * ****** (12.0 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CCGGATTC consensus AT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGGATTC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr19:40932251-40932271 2 1.95e-05 t ccggattc cccactcact chr4:10458948-10458968 1 1.95e-05 . CCGGATTC GGGTGCCAGG chr2:95522817-95522837 8 1.95e-05 CGGAGTC CCGGATTC GGTAT chr5:140792556-140792576 1 1.95e-05 . CCGGATTC TCAGGGCTTC chr18:18690781-18690801 9 3.33e-05 CAAACAAT CCGAATTC ACTT chr6:34204958-34204978 13 6.94e-05 CTGCTCTCTC CCGGTTTC chr11:62693441-62693461 8 6.94e-05 TCCGAGT CCGGTTTC GAAAT chr12:44097716-44097736 1 6.94e-05 . caggattc ctaacctgtg chr6:86159145-86159165 4 8.52e-05 GAA CTGGATTC GAATGATTT chr19:17798701-17798721 11 1.02e-04 GGGTAGAACC CCGGATAC CC chr7:24935772-24935792 1 1.28e-04 . cagaattc ggtttgggat chr6:27722111-27722131 9 1.28e-04 TGGATAAG CCGATTTC AAGT chr4:77872373-77872393 8 1.48e-04 TCCCTTT GCGGATTC TAATT chrX:111922676-111922696 3 1.99e-04 AA CCGGATCC ATTTTTACTT chr1:19835587-19835607 8 1.99e-04 gttttgg ccggcttc tttac -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGGATTC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:40932251-40932271 1.9e-05 1_[+2]_11 chr4:10458948-10458968 1.9e-05 [+2]_12 chr2:95522817-95522837 1.9e-05 7_[+2]_5 chr5:140792556-140792576 1.9e-05 [+2]_12 chr18:18690781-18690801 3.3e-05 8_[+2]_4 chr6:34204958-34204978 6.9e-05 12_[+2] chr11:62693441-62693461 6.9e-05 7_[+2]_5 chr12:44097716-44097736 6.9e-05 [+2]_12 chr6:86159145-86159165 8.5e-05 3_[+2]_9 chr19:17798701-17798721 0.0001 10_[+2]_2 chr7:24935772-24935792 0.00013 [+2]_12 chr6:27722111-27722131 0.00013 8_[+2]_4 chr4:77872373-77872393 0.00015 7_[+2]_5 chrX:111922676-111922696 0.0002 2_[+2]_10 chr1:19835587-19835607 0.0002 7_[+2]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGGATTC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCGGATTC width=8 seqs=15 chr19:40932251-40932271 ( 2) CCGGATTC 1 chr4:10458948-10458968 ( 1) CCGGATTC 1 chr2:95522817-95522837 ( 8) CCGGATTC 1 chr5:140792556-140792576 ( 1) CCGGATTC 1 chr18:18690781-18690801 ( 9) CCGAATTC 1 chr6:34204958-34204978 ( 13) CCGGTTTC 1 chr11:62693441-62693461 ( 8) CCGGTTTC 1 chr12:44097716-44097736 ( 1) CAGGATTC 1 chr6:86159145-86159165 ( 4) CTGGATTC 1 chr19:17798701-17798721 ( 11) CCGGATAC 1 chr7:24935772-24935792 ( 1) CAGAATTC 1 chr6:27722111-27722131 ( 9) CCGATTTC 1 chr4:77872373-77872393 ( 8) GCGGATTC 1 chrX:111922676-111922696 ( 3) CCGGATCC 1 chr1:19835587-19835607 ( 8) CCGGCTTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGGATTC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.42938 E= 1.5e+000 -1055 173 -209 -1055 -60 150 -1055 -179 -1055 -1055 181 -1055 -2 -1055 149 -1055 186 -208 -1055 -20 -1055 -1055 -1055 212 -160 -208 -1055 191 -1055 182 -1055 -1055 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGGATTC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 1.5e+000 0.000000 0.933333 0.066667 0.000000 0.133333 0.800000 0.000000 0.066667 0.000000 0.000000 1.000000 0.000000 0.200000 0.000000 0.800000 0.000000 0.733333 0.066667 0.000000 0.200000 0.000000 0.000000 0.000000 1.000000 0.066667 0.066667 0.000000 0.866667 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGGATTC MEME-2 regular expression -------------------------------------------------------------------------------- CCG[GA][AT]TTC -------------------------------------------------------------------------------- Time 3.56 secs. ******************************************************************************** ******************************************************************************** MOTIF AAATTATT MEME-3 width = 8 sites = 2 llr = 25 E-value = 9.0e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAATTATT MEME-3 Description -------------------------------------------------------------------------------- Simplified A aaa::a:: pos.-specific C :::::::: probability G :::::::: matrix T :::aa:aa bits 2.3 *** * 2.1 ******** 1.8 ******** 1.6 ******** Relative 1.4 ******** Entropy 1.2 ******** (17.7 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AAATTATT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATTATT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr17:46801210-46801230 2 4.66e-06 G AAATTATT TCGGGCCTGG chr4:94255407-94255427 6 4.66e-06 catgc aaattatt aatgccc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATTATT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:46801210-46801230 4.7e-06 1_[+3]_11 chr4:94255407-94255427 4.7e-06 5_[+3]_7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATTATT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAATTATT width=8 seqs=2 chr17:46801210-46801230 ( 2) AAATTATT 1 chr4:94255407-94255427 ( 6) AAATTATT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATTATT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 10.6653 E= 9.0e+002 230 -765 -765 -765 230 -765 -765 -765 230 -765 -765 -765 -765 -765 -765 211 -765 -765 -765 211 230 -765 -765 -765 -765 -765 -765 211 -765 -765 -765 211 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATTATT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 9.0e+002 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATTATT MEME-3 regular expression -------------------------------------------------------------------------------- AAATTATT -------------------------------------------------------------------------------- Time 4.33 secs. ******************************************************************************** ******************************************************************************** MOTIF YAWRCAGY MEME-4 width = 8 sites = 9 llr = 80 E-value = 1.8e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif YAWRCAGY MEME-4 Description -------------------------------------------------------------------------------- Simplified A :a73:a:: pos.-specific C 3:::a::3 probability G :::7::a: matrix T 7:3::::7 bits 2.3 * * 2.1 * * 1.8 * *** 1.6 * *** Relative 1.4 ** *** Entropy 1.2 ******** (12.8 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TAAGCAGT consensus C TA C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YAWRCAGY MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr10:30791330-30791350 5 9.99e-06 GTGA TAAGCAGT CGTCGCAG chr2:120399394-120399414 10 2.84e-05 GAACTGACC TATGCAGT CAG chr1:221816927-221816947 7 2.84e-05 GTTGTC TATGCAGT CATAGG chr19:42379690-42379710 9 5.29e-05 tgtgtccc taagcagc ggac chr12:122984763-12298478 9 5.29e-05 CCCGCGTC TAAGCAGC CGGT chr7:92077547-92077567 4 6.10e-05 TCG TATACAGT GTCATGCCA chr16:75018412-75018432 12 7.83e-05 AGGCACTTTG CAAACAGT G chr14:102991660-10299168 5 7.83e-05 tgag caaacagt ctatacgg chr5:131977028-131977048 8 1.21e-04 AGGTTGT CAAGCAGC TCTTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YAWRCAGY MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:30791330-30791350 1e-05 4_[+4]_8 chr2:120399394-120399414 2.8e-05 9_[+4]_3 chr1:221816927-221816947 2.8e-05 6_[+4]_6 chr19:42379690-42379710 5.3e-05 8_[+4]_4 chr12:122984763-12298478 5.3e-05 8_[+4]_4 chr7:92077547-92077567 6.1e-05 3_[+4]_9 chr16:75018412-75018432 7.8e-05 11_[+4]_1 chr14:102991660-10299168 7.8e-05 4_[+4]_8 chr5:131977028-131977048 0.00012 7_[+4]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YAWRCAGY MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YAWRCAGY width=8 seqs=9 chr10:30791330-30791350 ( 5) TAAGCAGT 1 chr2:120399394-120399414 ( 10) TATGCAGT 1 chr1:221816927-221816947 ( 7) TATGCAGT 1 chr19:42379690-42379710 ( 9) TAAGCAGC 1 chr12:122984763-12298478 ( 9) TAAGCAGC 1 chr7:92077547-92077567 ( 4) TATACAGT 1 chr16:75018412-75018432 ( 12) CAAACAGT 1 chr14:102991660-10299168 ( 5) CAAACAGT 1 chr5:131977028-131977048 ( 8) CAAGCAGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YAWRCAGY MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.34207 E= 1.8e+003 -982 24 -982 153 230 -982 -982 -982 172 -982 -982 53 72 -982 123 -982 -982 182 -982 -982 230 -982 -982 -982 -982 -982 181 -982 -982 24 -982 153 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YAWRCAGY MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 1.8e+003 0.000000 0.333333 0.000000 0.666667 1.000000 0.000000 0.000000 0.000000 0.666667 0.000000 0.000000 0.333333 0.333333 0.000000 0.666667 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.333333 0.000000 0.666667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YAWRCAGY MEME-4 regular expression -------------------------------------------------------------------------------- [TC]A[AT][GA]CAG[TC] -------------------------------------------------------------------------------- Time 5.23 secs. ******************************************************************************** ******************************************************************************** MOTIF CACAACAA MEME-5 width = 8 sites = 2 llr = 24 E-value = 2.0e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CACAACAA MEME-5 Description -------------------------------------------------------------------------------- Simplified A :a:aa:aa pos.-specific C a:a::a:: probability G :::::::: matrix T :::::::: bits 2.3 * ** ** 2.1 * ** ** 1.8 ******** 1.6 ******** Relative 1.4 ******** Entropy 1.2 ******** (17.0 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CACAACAA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACAACAA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr14:21093616-21093636 9 7.54e-06 CGTTTTAG CACAACAA GGAT chr6:53512350-53512370 1 7.54e-06 . CACAACAA TGCGATTTTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACAACAA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr14:21093616-21093636 7.5e-06 8_[+5]_4 chr6:53512350-53512370 7.5e-06 [+5]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACAACAA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CACAACAA width=8 seqs=2 chr14:21093616-21093636 ( 9) CACAACAA 1 chr6:53512350-53512370 ( 1) CACAACAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACAACAA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 10.6653 E= 2.0e+003 -765 182 -765 -765 230 -765 -765 -765 -765 182 -765 -765 230 -765 -765 -765 230 -765 -765 -765 -765 182 -765 -765 230 -765 -765 -765 230 -765 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACAACAA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.0e+003 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACAACAA MEME-5 regular expression -------------------------------------------------------------------------------- CACAACAA -------------------------------------------------------------------------------- Time 5.97 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:1389390-1389410 8.83e-01 20 chr3:138553182-138553202 9.99e-01 20 chr22:42764707-42764727 5.47e-01 20 chr3:182698687-182698707 4.71e-01 20 chr1:236228359-236228379 2.37e-01 20 chr21:36042198-36042218 1.00e+00 20 chr17:46688031-46688051 9.91e-01 20 chr4:94255407-94255427 2.82e-03 5_[+3(4.66e-06)]_7 chr7:26192735-26192755 9.54e-01 20 chr1:215757960-215757980 2.79e-01 20 chr1:221816927-221816947 2.47e-02 6_[+4(2.84e-05)]_6 chr11:67038845-67038865 5.20e-01 20 chr16:9053920-9053940 2.04e-01 20 chr19:36500314-36500334 7.43e-01 20 chr14:107259936-10725995 4.17e-01 20 chr19:50037487-50037507 9.91e-01 20 chr17:60556304-60556324 9.84e-01 20 chr5:140792556-140792576 2.94e-02 [+2(1.95e-05)]_12 chr12:54476065-54476085 4.34e-01 20 chr12:103349931-10334995 4.00e-01 20 chr16:84537847-84537867 9.86e-01 20 chr2:175546937-175546957 3.73e-01 20 chr14:92980606-92980626 8.18e-01 20 chr6:26600045-26600065 1.51e-03 20 chr17:46801210-46801230 1.66e-02 1_[+3(4.66e-06)]_11 chr16:2524072-2524092 9.40e-01 20 chr4:77872373-77872393 7.56e-02 20 chr18:8608883-8608903 2.67e-01 20 chr21:42792123-42792143 1.96e-01 20 chr18:12307569-12307589 9.39e-01 20 chr2:95522817-95522837 4.77e-02 7_[+2(1.95e-05)]_5 chr7:116963787-116963807 7.12e-01 20 chr10:30791330-30791350 5.71e-03 4_[+4(9.99e-06)]_8 chr11:10878413-10878433 1.74e-01 20 chr12:93771321-93771341 3.86e-01 20 chr6:41513388-41513408 1.96e-01 20 chr7:33102299-33102319 9.64e-01 20 chr12:42983066-42983086 6.06e-01 20 chr18:77344633-77344653 2.29e-04 2_[+1(9.29e-05)]_10 chr12:122984763-12298478 2.12e-02 8_[+4(5.29e-05)]_4 chr18:18690781-18690801 1.67e-04 8_[+2(3.33e-05)]_4 chr9:139621354-139621374 9.49e-01 20 chr2:70018339-70018359 3.65e-01 20 chr1:45969428-45969448 3.73e-01 20 chr17:38948247-38948267 2.69e-01 20 chr1:31896368-31896388 5.45e-01 20 chr9:6758807-6758827 8.76e-01 20 chr16:46724013-46724033 7.64e-01 20 chr9:139581372-139581392 2.99e-02 1_[+1(1.41e-05)]_11 chr2:239067970-239067990 9.42e-01 20 chr9:92220405-92220425 4.53e-01 20 chr13:20439008-20439028 7.21e-01 20 chr11:66045480-66045500 1.00e+00 20 chr8:3964344-3964364 2.09e-02 20 chr7:128580217-128580237 9.01e-01 20 chr19:18403104-18403124 3.87e-01 20 chr12:44097716-44097736 1.31e-02 [+2(6.94e-05)]_12 chr1:94146400-94146420 1.57e-02 20 chr14:22974485-22974505 8.53e-01 20 chr7:128171527-128171547 8.93e-01 20 chr17:70114003-70114023 5.31e-01 20 chr12:2903716-2903736 8.00e-01 20 chr12:103572663-10357268 1.74e-01 20 chr11:82905478-82905498 7.08e-02 20 chr13:24040907-24040927 6.32e-01 20 chr4:22692453-22692473 4.60e-02 20 chr14:61855036-61855056 3.87e-01 20 chr14:102991660-10299168 3.01e-03 4_[+4(7.83e-05)]_8 chr1:26126450-26126470 8.79e-01 20 chr15:37103112-37103132 8.06e-01 20 chr4:26206113-26206133 9.35e-01 20 chr19:52800806-52800826 6.06e-01 20 chr7:30325602-30325622 4.73e-01 20 chr8:67045131-67045151 4.54e-01 20 chr1:31635774-31635794 1.28e-03 5_[+1(1.41e-05)]_7 chr22:23634769-23634789 1.17e-02 20 chr6:53512350-53512370 3.27e-04 [+5(7.54e-06)]_12 chr2:171627941-171627961 9.84e-01 20 chr2:145273611-145273631 9.65e-01 20 chr1:934571-934591 1.06e-01 12_[+1(6.92e-05)] chr4:53567596-53567616 9.82e-01 20 chr5:78219308-78219328 7.15e-02 20 chr12:131091000-13109102 8.09e-01 20 chr19:15442967-15442987 9.37e-01 20 chr3:156392882-156392902 9.99e-01 20 chr4:10458948-10458968 2.60e-02 [+2(1.95e-05)]_12 chr12:9885596-9885616 7.39e-03 7_[+1(6.92e-05)]_5 chr3:58186729-58186749 8.25e-01 20 chr3:184231633-184231653 9.99e-01 20 chr6:160113922-160113942 9.83e-01 20 chr16:75018412-75018432 1.18e-02 11_[+4(7.83e-05)]_1 chr12:4382081-4382101 8.34e-01 20 chr1:24126298-24126318 3.87e-01 20 chr6:134495302-134495322 1.55e-01 20 chrX:7065849-7065869 1.00e+00 20 chr14:105940856-10594087 9.93e-01 20 chr20:43281059-43281079 6.48e-02 20 chr10:88295520-88295540 8.46e-02 20 chr14:71787826-71787846 9.72e-01 20 chr5:95069011-95069031 1.57e-01 20 chr6:74020007-74020027 4.11e-01 20 chr10:112432080-11243210 8.99e-01 20 chr14:51298343-51298363 6.32e-01 20 chr5:78141533-78141553 1.87e-02 20 chr10:60026271-60026291 2.93e-01 20 chr11:13068920-13068940 9.97e-01 20 chr4:86699633-86699653 3.84e-01 20 chr6:27722111-27722131 1.41e-02 20 chr1:110753670-110753690 9.53e-01 20 chr7:43094836-43094856 1.02e-01 20 chr1:19835587-19835607 1.75e-01 20 chr3:89163790-89163810 9.64e-01 20 chr22:50355462-50355482 1.00e+00 20 chr6:22375362-22375382 6.62e-02 20 chr6:37139229-37139249 5.80e-01 20 chr1:33726197-33726217 6.13e-01 20 chr22:43485148-43485168 4.86e-01 20 chr20:49186179-49186199 4.06e-02 20 chr6:78258062-78258082 6.69e-02 20 chr1:40137719-40137739 9.90e-01 20 chr12:106695792-10669581 2.95e-02 9_[+1(1.41e-05)]_3 chr4:48782185-48782205 1.16e-01 20 chr11:58979864-58979884 1.17e-03 1_[+1(1.41e-05)]_11 chr10:120966356-12096637 9.37e-02 1_[+1(6.92e-05)]_11 chrX:111922676-111922696 3.22e-02 20 chr2:86093083-86093103 6.38e-01 20 chr19:267361-267381 6.10e-01 20 chr8:105286667-105286687 1.65e-01 20 chr6:125513581-125513601 3.69e-01 20 chrX:154493789-154493809 3.96e-01 20 chr10:95242164-95242184 3.68e-01 20 chr6:109006266-109006286 9.61e-01 20 chr20:57463755-57463775 4.54e-01 20 chr19:926117-926137 9.40e-01 20 chr6:111196579-111196599 8.56e-01 20 chr2:61404249-61404269 1.95e-02 7_[+1(9.29e-05)]_5 chr16:22218424-22218444 2.62e-02 8_[+1(5.20e-05)]_4 chr12:95868532-95868552 9.30e-01 20 chr18:60319416-60319436 1.59e-01 20 chr12:9791349-9791369 4.75e-01 20 chr12:56334184-56334204 8.08e-01 20 chr6:27470808-27470828 6.34e-02 20 chr9:127532045-127532065 9.90e-01 20 chr13:42980610-42980630 4.56e-01 20 chr1:52498677-52498697 4.29e-02 20 chr15:79232308-79232328 8.79e-01 20 chr2:120399394-120399414 1.64e-02 9_[+4(2.84e-05)]_3 chr10:17269829-17269849 8.58e-01 20 chr2:174904660-174904680 1.17e-01 20 chr9:33560403-33560423 7.91e-01 20 chr5:32173615-32173635 4.47e-01 20 chr15:97687266-97687286 1.38e-01 20 chrX:68048864-68048884 1.96e-01 20 chr2:27308673-27308693 1.00e+00 20 chr6:26327854-26327874 9.57e-01 20 chr6:153531380-153531400 1.45e-03 20 chr9:140720254-140720274 6.18e-01 20 chr12:498032-498052 5.25e-01 20 chr3:15373922-15373942 9.72e-01 20 chr1:221914372-221914392 2.12e-02 9_[+1(9.29e-05)]_3 chr17:8125577-8125597 5.80e-01 20 chr12:132379269-13237928 6.45e-01 20 chr22:30685592-30685612 6.51e-01 20 chr7:10979067-10979087 2.55e-02 20 chr6:86159145-86159165 1.15e-02 3_[+2(8.52e-05)]_9 chr6:3118722-3118742 5.60e-01 20 chr1:50798840-50798860 8.90e-01 20 chr7:100487563-100487583 9.66e-01 20 chr12:12857115-12857135 7.89e-03 8_[+1(5.20e-05)]_4 chr6:26553739-26553759 9.87e-01 20 chr12:133136728-13313674 1.00e+00 20 chr2:216197967-216197987 2.58e-02 9_[+1(6.92e-05)]_3 chr3:105088391-105088411 2.06e-02 9_[+1(9.29e-05)]_3 chr14:53258187-53258207 5.85e-01 20 chr19:42379690-42379710 4.26e-02 8_[+4(5.29e-05)]_4 chr6:74230143-74230163 8.46e-01 20 chr10:125343353-12534337 3.83e-01 20 chr13:20531631-20531651 2.17e-02 5_[+1(1.41e-05)]_7 chr16:30884886-30884906 9.91e-01 20 chr11:57335668-57335688 9.76e-01 20 chr19:17798701-17798721 4.86e-02 20 chr8:86089959-86089979 7.83e-01 20 chr5:17225039-17225059 6.06e-02 20 chr8:103424195-103424215 9.55e-01 20 chr5:131977028-131977048 6.28e-02 20 chr1:247531404-247531424 3.62e-01 20 chr8:22224860-22224880 9.82e-01 20 chr7:24935772-24935792 6.51e-02 20 chr19:8274720-8274740 7.56e-01 20 chr5:112257969-112257989 7.32e-01 20 chr10:50261662-50261682 2.31e-01 20 chr10:35012852-35012872 2.50e-02 10_[+1(9.29e-05)]_2 chr20:42067370-42067390 1.80e-02 20 chrX:15901389-15901409 8.83e-01 20 chr21:37694127-37694147 9.89e-01 20 chr1:43919635-43919655 9.94e-01 20 chr15:88723072-88723092 1.42e-01 20 chr10:124740396-12474041 1.18e-02 20 chr17:70112546-70112566 6.91e-01 20 chr16:30103569-30103589 7.39e-01 20 chr8:48290238-48290258 4.62e-02 20 chr1:178695448-178695468 8.27e-01 20 chr3:150127667-150127687 9.99e-01 20 chr11:77851226-77851246 5.75e-02 20 chr6:28908888-28908908 3.75e-01 20 chr14:21093616-21093636 1.39e-02 8_[+5(7.54e-06)]_4 chr1:59248220-59248240 4.69e-02 10_[+1(6.92e-05)]_2 chrX:24168016-24168036 9.48e-01 20 chr11:62693441-62693461 1.11e-01 7_[+2(6.94e-05)]_5 chr1:935464-935484 9.99e-01 20 chr9:2242011-2242031 9.43e-01 20 chr3:81042833-81042853 9.29e-01 20 chr7:87831831-87831851 2.59e-01 20 chr2:113448557-113448577 8.42e-01 20 chr19:16772590-16772610 9.94e-01 20 chr8:27685338-27685358 8.47e-01 20 chr17:73031260-73031280 9.70e-01 20 chr3:118296095-118296115 2.11e-02 20 chr4:38784614-38784634 6.39e-01 20 chr6:72076158-72076178 8.66e-02 20 chr3:181651047-181651067 1.45e-02 20 chr17:1390564-1390584 9.93e-01 20 chr1:221952179-221952199 4.47e-02 20 chr6:34204958-34204978 9.66e-02 12_[+2(6.94e-05)] chr14:21101257-21101277 5.06e-01 20 chr12:56615946-56615966 6.62e-01 20 chr2:44408937-44408957 2.91e-02 20 chr3:189373543-189373563 1.32e-01 20 chr20:5058848-5058868 7.02e-01 20 chr2:57776903-57776923 6.40e-01 20 chr3:185653119-185653139 1.00e+00 20 chr7:92077547-92077567 5.74e-03 3_[+4(6.10e-05)]_9 chr17:16873806-16873826 2.51e-01 20 chr6:146056342-146056362 3.67e-01 20 chr5:17223659-17223679 6.94e-02 20 chr19:16739608-16739628 8.08e-01 20 chr10:27541790-27541810 9.00e-01 20 chr1:201619428-201619448 9.93e-01 20 chr6:155507433-155507453 8.62e-02 20 chr7:17338604-17338624 8.48e-01 20 chr7:139478466-139478486 8.32e-03 8_[+1(9.29e-05)]_4 chr6:5278485-5278505 7.81e-01 20 chr2:231276528-231276548 3.34e-01 20 chr19:17797469-17797489 3.24e-01 20 chr14:71597571-71597591 6.61e-01 20 chr19:40932251-40932271 1.76e-02 1_[+2(1.95e-05)]_11 chr20:62371760-62371780 9.96e-01 20 chr9:124855299-124855319 6.47e-01 20 chr2:25737248-25737268 8.12e-02 20 chr11:60674342-60674362 1.63e-02 6_[+1(6.92e-05)]_6 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n05.farnam.hpc.yale.internal ********************************************************************************