******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/ZNF687.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr1:200855916-200855936 1.0000 20 chr14:93361879-93361899 1.0000 20 chr17:75185507-75185527 1.0000 20 chr12:27374070-27374090 1.0000 20 chr8:102921123-102921143 1.0000 20 chr9:99183118-99183138 1.0000 20 chr7:105824619-105824639 1.0000 20 chr7:139367928-139367948 1.0000 20 chr1:1358142-1358162 1.0000 20 chr12:124616009-12461602 1.0000 20 chr1:169130828-169130848 1.0000 20 chr16:29625220-29625240 1.0000 20 chr3:13129786-13129806 1.0000 20 chr12:31985835-31985855 1.0000 20 chr16:22366911-22366931 1.0000 20 chr2:160749583-160749603 1.0000 20 chr8:101514091-101514111 1.0000 20 chr10:82864511-82864531 1.0000 20 chr21:43084484-43084504 1.0000 20 chr14:50511871-50511891 1.0000 20 chr19:19496093-19496113 1.0000 20 chr14:103894350-10389437 1.0000 20 chr7:120034802-120034822 1.0000 20 chr14:34012067-34012087 1.0000 20 chr19:35933201-35933221 1.0000 20 chr3:119261487-119261507 1.0000 20 chrX:19780194-19780214 1.0000 20 chr22:42839922-42839942 1.0000 20 chr22:31136588-31136608 1.0000 20 chr2:233951800-233951820 1.0000 20 chrX:118820140-118820160 1.0000 20 chr5:159658225-159658245 1.0000 20 chr10:12307582-12307602 1.0000 20 chr1:247531198-247531218 1.0000 20 chr16:11327014-11327034 1.0000 20 chr19:35845981-35846001 1.0000 20 chr17:75105604-75105624 1.0000 20 chr2:201991221-201991241 1.0000 20 chr13:100026628-10002664 1.0000 20 chr16:11275982-11276002 1.0000 20 chr1:235146604-235146624 1.0000 20 chr14:100803236-10080325 1.0000 20 chr22:24833864-24833884 1.0000 20 chr17:53504632-53504652 1.0000 20 chr6:167543658-167543678 1.0000 20 chr18:10685544-10685564 1.0000 20 chr4:40580106-40580126 1.0000 20 chr8:128239254-128239274 1.0000 20 chr17:30885436-30885456 1.0000 20 chr4:22600249-22600269 1.0000 20 chr5:179106280-179106300 1.0000 20 chr17:38709492-38709512 1.0000 20 chr14:103234715-10323473 1.0000 20 chr16:23874059-23874079 1.0000 20 chr6:26550592-26550612 1.0000 20 chr1:160522374-160522394 1.0000 20 chr12:31960162-31960182 1.0000 20 chr9:129921704-129921724 1.0000 20 chr5:133405430-133405450 1.0000 20 chr8:11365734-11365754 1.0000 20 chr11:63302470-63302490 1.0000 20 chr7:107830325-107830345 1.0000 20 chr19:6576896-6576916 1.0000 20 chr15:40374970-40374990 1.0000 20 chr3:183229636-183229656 1.0000 20 chr7:150018080-150018100 1.0000 20 chr21:36045446-36045466 1.0000 20 chr9:85341955-85341975 1.0000 20 chr1:90975951-90975971 1.0000 20 chr3:58097585-58097605 1.0000 20 chr15:34628804-34628824 1.0000 20 chr11:1331083-1331103 1.0000 20 chr17:19091411-19091431 1.0000 20 chr11:124940812-12494083 1.0000 20 chrX:148206431-148206451 1.0000 20 chr17:53510200-53510220 1.0000 20 chr4:165857471-165857491 1.0000 20 chrX:128911550-128911570 1.0000 20 chr6:43970439-43970459 1.0000 20 chr1:234735685-234735705 1.0000 20 chr4:127093419-127093439 1.0000 20 chr17:16825884-16825904 1.0000 20 chr22:38610675-38610695 1.0000 20 chr19:1068287-1068307 1.0000 20 chr6:14077546-14077566 1.0000 20 chr17:72631802-72631822 1.0000 20 chr3:195910625-195910645 1.0000 20 chrX:15901582-15901602 1.0000 20 chr6:6592392-6592412 1.0000 20 chr19:49631192-49631212 1.0000 20 chr5:176829607-176829627 1.0000 20 chr17:37956993-37957013 1.0000 20 chr12:12961176-12961196 1.0000 20 chr18:519198-519218 1.0000 20 chr15:80254693-80254713 1.0000 20 chr14:74225568-74225588 1.0000 20 chr7:156716275-156716295 1.0000 20 chr6:159240721-159240741 1.0000 20 chr16:21831641-21831661 1.0000 20 chr17:70600942-70600962 1.0000 20 chr10:71867474-71867494 1.0000 20 chr7:105980653-105980673 1.0000 20 chr2:137063233-137063253 1.0000 20 chr1:235108293-235108313 1.0000 20 chr16:89126879-89126899 1.0000 20 chr11:115798913-11579893 1.0000 20 chr6:130945324-130945344 1.0000 20 chr3:13053377-13053397 1.0000 20 chr4:71781802-71781822 1.0000 20 chr17:2143468-2143488 1.0000 20 chr14:25175338-25175358 1.0000 20 chr15:60878076-60878096 1.0000 20 chr9:129881386-129881406 1.0000 20 chr16:29086383-29086403 1.0000 20 chr9:5566465-5566485 1.0000 20 chr19:46854070-46854090 1.0000 20 chr10:71168811-71168831 1.0000 20 chr6:37527049-37527069 1.0000 20 chr2:233989563-233989583 1.0000 20 chr1:83945714-83945734 1.0000 20 chrX:109415611-109415631 1.0000 20 chr5:95064385-95064405 1.0000 20 chr11:65903521-65903541 1.0000 20 chr10:27389474-27389494 1.0000 20 chr5:142588937-142588957 1.0000 20 chr2:113563319-113563339 1.0000 20 chr12:109024883-10902490 1.0000 20 chr3:10241016-10241036 1.0000 20 chr15:96472668-96472688 1.0000 20 chr7:5270600-5270620 1.0000 20 chr14:69821145-69821165 1.0000 20 chr22:33866556-33866576 1.0000 20 chr16:68118533-68118553 1.0000 20 chr9:99540445-99540465 1.0000 20 chr19:30171549-30171569 1.0000 20 chr1:31191700-31191720 1.0000 20 chr19:39993456-39993476 1.0000 20 chr10:49491087-49491107 1.0000 20 chr21:45573932-45573952 1.0000 20 chr19:35821484-35821504 1.0000 20 chr12:92947402-92947422 1.0000 20 chr9:134594753-134594773 1.0000 20 chr10:21814836-21814856 1.0000 20 chr19:14551006-14551026 1.0000 20 chr10:74020353-74020373 1.0000 20 chr5:156698976-156698996 1.0000 20 chr19:10207074-10207094 1.0000 20 chr14:60673163-60673183 1.0000 20 chr19:38497269-38497289 1.0000 20 chr22:24086427-24086447 1.0000 20 chr1:101917533-101917553 1.0000 20 chr19:50837218-50837238 1.0000 20 chr18:39809378-39809398 1.0000 20 chr7:18906434-18906454 1.0000 20 chr19:43001710-43001730 1.0000 20 chr17:70421581-70421601 1.0000 20 chr22:44464639-44464659 1.0000 20 chr22:22959265-22959285 1.0000 20 chr22:50981090-50981110 1.0000 20 chr7:150077674-150077694 1.0000 20 chr8:30823957-30823977 1.0000 20 chr16:30389217-30389237 1.0000 20 chrX:7033847-7033867 1.0000 20 chr17:56310316-56310336 1.0000 20 chr5:179246568-179246588 1.0000 20 chr2:208199693-208199713 1.0000 20 chrX:129403005-129403025 1.0000 20 chr17:55435285-55435305 1.0000 20 chr12:108959965-10895998 1.0000 20 chr21:43837794-43837814 1.0000 20 chr6:149354843-149354863 1.0000 20 chr1:171585910-171585930 1.0000 20 chr22:43253439-43253459 1.0000 20 chr20:4793966-4793986 1.0000 20 chr11:59041208-59041228 1.0000 20 chr3:160167796-160167816 1.0000 20 chr5:35317113-35317133 1.0000 20 chr7:156433160-156433180 1.0000 20 chr1:154833164-154833184 1.0000 20 chr13:25199595-25199615 1.0000 20 chr10:81003610-81003630 1.0000 20 chr3:186734656-186734676 1.0000 20 chr2:96890889-96890909 1.0000 20 chr8:142099610-142099630 1.0000 20 chr15:52404489-52404509 1.0000 20 chr3:48264149-48264169 1.0000 20 chrX:1600739-1600759 1.0000 20 chr17:17597667-17597687 1.0000 20 chr20:50021450-50021470 1.0000 20 chr22:37638565-37638585 1.0000 20 chr2:101012125-101012145 1.0000 20 chr2:38760538-38760558 1.0000 20 chr5:149104213-149104233 1.0000 20 chr16:11172039-11172059 1.0000 20 chr1:26202177-26202197 1.0000 20 chr6:15770971-15770991 1.0000 20 chr6:2892086-2892106 1.0000 20 chr17:33378365-33378385 1.0000 20 chr1:210573991-210574011 1.0000 20 chr17:66255435-66255455 1.0000 20 chr5:131762340-131762360 1.0000 20 chr6:10404893-10404913 1.0000 20 chr9:140164038-140164058 1.0000 20 chr15:96407911-96407931 1.0000 20 chr17:46507697-46507717 1.0000 20 chr21:45575949-45575969 1.0000 20 chr15:78181590-78181610 1.0000 20 chr8:103110246-103110266 1.0000 20 chr5:5523352-5523372 1.0000 20 chr1:171569756-171569776 1.0000 20 chr2:237454742-237454762 1.0000 20 chr1:27433207-27433227 1.0000 20 chr11:330606-330626 1.0000 20 chr16:11300725-11300745 1.0000 20 chr15:101804353-10180437 1.0000 20 chr2:227700633-227700653 1.0000 20 chr15:35286234-35286254 1.0000 20 chr9:139969563-139969583 1.0000 20 chr13:30948073-30948093 1.0000 20 chr9:6051706-6051726 1.0000 20 chr10:99473899-99473919 1.0000 20 chr14:98693649-98693669 1.0000 20 chr21:37915159-37915179 1.0000 20 chrX:1587225-1587245 1.0000 20 chr5:169064982-169065002 1.0000 20 chr7:2393641-2393661 1.0000 20 chrX:128907159-128907179 1.0000 20 chr16:4588915-4588935 1.0000 20 chr17:38254572-38254592 1.0000 20 chr20:5567513-5567533 1.0000 20 chr10:126386878-12638689 1.0000 20 chr13:100033308-10003332 1.0000 20 chr13:33718795-33718815 1.0000 20 chr6:22373280-22373300 1.0000 20 chr14:90798087-90798107 1.0000 20 chr11:72865390-72865410 1.0000 20 chr10:75541785-75541805 1.0000 20 chr16:21531939-21531959 1.0000 20 chr3:58188766-58188786 1.0000 20 chr22:42335145-42335165 1.0000 20 chr15:31555701-31555721 1.0000 20 chr1:67637418-67637438 1.0000 20 chr16:745653-745673 1.0000 20 chr2:134261012-134261032 1.0000 20 chr21:34814321-34814341 1.0000 20 chr10:88438958-88438978 1.0000 20 chr12:53895327-53895347 1.0000 20 chr17:18967156-18967176 1.0000 20 chr11:117856835-11785685 1.0000 20 chr10:73507748-73507768 1.0000 20 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/GM12878/inference_raw/MEME/RankLinear0.6_10_ZNF687/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/ZNF687.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 5000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 5000 norand= no csites= 1000 Letter frequencies in dataset: A 0.226 C 0.27 G 0.272 T 0.232 Background letter frequencies (from file dataset with add-one prior applied): A 0.226 C 0.27 G 0.272 T 0.232 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF AATGGAGT MEME-1 width = 8 sites = 12 llr = 122 E-value = 3.5e-007 ******************************************************************************** -------------------------------------------------------------------------------- Motif AATGGAGT MEME-1 Description -------------------------------------------------------------------------------- Simplified A 7a:::a1: pos.-specific C 1::::::: probability G 3::aa:9: matrix T ::a::::a bits 2.1 ** * * 1.9 ***** * 1.7 ***** * 1.5 ******* Relative 1.3 ******* Entropy 1.1 ******* (14.6 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AATGGAGT consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATGGAGT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr13:25199595-25199615 5 1.25e-05 ccaa aatggagt tactcctg chr11:59041208-59041228 2 1.25e-05 c aatggagt aactgtggac chr6:130945324-130945344 6 1.25e-05 gtcaa aatggagt aaattgt chr3:183229636-183229656 12 1.25e-05 tacaggtcaa aatggagt t chr2:160749583-160749603 3 1.25e-05 aa aatggagt cacccatgcc chr16:22366911-22366931 7 1.25e-05 aaccaa aatggagt cacttg chr8:102921123-102921143 3 1.25e-05 aa aatggagt cacttgtgct chr12:27374070-27374090 6 1.25e-05 accaa aatggagt cactcat chr7:156716275-156716295 1 2.76e-05 . gatggagt ctttttctaa chr22:31136588-31136608 5 2.76e-05 gcaa gatggagt cagttaag chr8:30823957-30823977 2 5.29e-05 a catggagt cagcagtgtc chr7:120034802-120034822 3 6.54e-05 aa gatggaat cagtcatgtt -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATGGAGT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr13:25199595-25199615 1.3e-05 4_[+1]_8 chr11:59041208-59041228 1.3e-05 1_[+1]_11 chr6:130945324-130945344 1.3e-05 5_[+1]_7 chr3:183229636-183229656 1.3e-05 11_[+1]_1 chr2:160749583-160749603 1.3e-05 2_[+1]_10 chr16:22366911-22366931 1.3e-05 6_[+1]_6 chr8:102921123-102921143 1.3e-05 2_[+1]_10 chr12:27374070-27374090 1.3e-05 5_[+1]_7 chr7:156716275-156716295 2.8e-05 [+1]_12 chr22:31136588-31136608 2.8e-05 4_[+1]_8 chr8:30823957-30823977 5.3e-05 1_[+1]_11 chr7:120034802-120034822 6.5e-05 2_[+1]_10 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATGGAGT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AATGGAGT width=8 seqs=12 chr13:25199595-25199615 ( 5) AATGGAGT 1 chr11:59041208-59041228 ( 2) AATGGAGT 1 chr6:130945324-130945344 ( 6) AATGGAGT 1 chr3:183229636-183229656 ( 12) AATGGAGT 1 chr2:160749583-160749603 ( 3) AATGGAGT 1 chr16:22366911-22366931 ( 7) AATGGAGT 1 chr8:102921123-102921143 ( 3) AATGGAGT 1 chr12:27374070-27374090 ( 6) AATGGAGT 1 chr7:156716275-156716295 ( 1) GATGGAGT 1 chr22:31136588-31136608 ( 5) GATGGAGT 1 chr8:30823957-30823977 ( 2) CATGGAGT 1 chr7:120034802-120034822 ( 3) GATGGAAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATGGAGT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.52481 E= 3.5e-007 156 -169 -12 -1023 215 -1023 -1023 -1023 -1023 -1023 -1023 211 -1023 -1023 188 -1023 -1023 -1023 188 -1023 215 -1023 -1023 -1023 -144 -1023 175 -1023 -1023 -1023 -1023 211 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATGGAGT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 3.5e-007 0.666667 0.083333 0.250000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.083333 0.000000 0.916667 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATGGAGT MEME-1 regular expression -------------------------------------------------------------------------------- [AG]ATGGAGT -------------------------------------------------------------------------------- Time 1.93 secs. ******************************************************************************** ******************************************************************************** MOTIF GACTCCAT MEME-2 width = 8 sites = 11 llr = 110 E-value = 1.9e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif GACTCCAT MEME-2 Description -------------------------------------------------------------------------------- Simplified A 1a::::a: pos.-specific C ::a:8a:: probability G 9:::2::1 matrix T :::a:::9 bits 2.1 * * * 1.9 *** ** 1.7 *** *** 1.5 **** *** Relative 1.3 ******** Entropy 1.1 ******** (14.5 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GACTCCAT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GACTCCAT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr5:95064385-95064405 1 1.47e-05 . gactccat cttgagtaga chr4:127093419-127093439 8 1.47e-05 ccacagt gactccat gttgg chr13:100026628-10002664 1 1.47e-05 . gactccat ttagtttggt chr3:119261487-119261507 4 1.47e-05 act gactccat cttgcttct chr12:31985835-31985855 12 1.47e-05 tggccagagt gactccat c chr12:124616009-12461602 9 1.47e-05 acctaacc gactccat ctcg chr7:105824619-105824639 2 1.47e-05 t gactccat tttgattctg chr17:75185507-75185527 10 1.47e-05 accaagagg gactccat ttt chr8:128239254-128239274 5 2.95e-05 tgaa gactgcat gtgattca chr5:133405430-133405450 1 4.18e-05 . aactccat cttgagtaaa chr16:21831641-21831661 1 8.87e-05 . GACTGCAG AGGACGAAGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GACTCCAT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr5:95064385-95064405 1.5e-05 [+2]_12 chr4:127093419-127093439 1.5e-05 7_[+2]_5 chr13:100026628-10002664 1.5e-05 [+2]_12 chr3:119261487-119261507 1.5e-05 3_[+2]_9 chr12:31985835-31985855 1.5e-05 11_[+2]_1 chr12:124616009-12461602 1.5e-05 8_[+2]_4 chr7:105824619-105824639 1.5e-05 1_[+2]_11 chr17:75185507-75185527 1.5e-05 9_[+2]_3 chr8:128239254-128239274 3e-05 4_[+2]_8 chr5:133405430-133405450 4.2e-05 [+2]_12 chr16:21831641-21831661 8.9e-05 [+2]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GACTCCAT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GACTCCAT width=8 seqs=11 chr5:95064385-95064405 ( 1) GACTCCAT 1 chr4:127093419-127093439 ( 8) GACTCCAT 1 chr13:100026628-10002664 ( 1) GACTCCAT 1 chr3:119261487-119261507 ( 4) GACTCCAT 1 chr12:31985835-31985855 ( 12) GACTCCAT 1 chr12:124616009-12461602 ( 9) GACTCCAT 1 chr7:105824619-105824639 ( 2) GACTCCAT 1 chr17:75185507-75185527 ( 10) GACTCCAT 1 chr8:128239254-128239274 ( 5) GACTGCAT 1 chr5:133405430-133405450 ( 1) AACTCCAT 1 chr16:21831641-21831661 ( 1) GACTGCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GACTCCAT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.55806 E= 1.9e-005 -131 -1010 174 -1010 215 -1010 -1010 -1010 -1010 189 -1010 -1010 -1010 -1010 -1010 211 -1010 160 -58 -1010 -1010 189 -1010 -1010 215 -1010 -1010 -1010 -1010 -1010 -158 197 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GACTCCAT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 1.9e-005 0.090909 0.000000 0.909091 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.818182 0.181818 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.090909 0.909091 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GACTCCAT MEME-2 regular expression -------------------------------------------------------------------------------- GACTCCAT -------------------------------------------------------------------------------- Time 2.74 secs. ******************************************************************************** ******************************************************************************** MOTIF CACRTGGC MEME-3 width = 8 sites = 11 llr = 95 E-value = 4.7e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CACRTGGC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :a:33::1 pos.-specific C a:92:::9 probability G :::5:aa: matrix T ::1:7::: bits 2.1 * 1.9 ** ** 1.7 ** ** 1.5 *** *** Relative 1.3 *** **** Entropy 1.1 *** **** (12.5 bits) 0.9 *** **** 0.6 *** **** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CACGTGGC consensus AA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACRTGGC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr17:46507697-46507717 1 2.08e-05 . CACGTGGC GCTCACGCCG chrX:7033847-7033867 8 2.08e-05 GTCCACG CACGTGGC TGCAA chr15:96472668-96472688 7 2.08e-05 CTAAGC CACGTGGC TTTTAA chr6:43970439-43970459 3 2.08e-05 GA CACGTGGC TGGGTGCAGA chr2:134261012-134261032 6 3.80e-05 ggtag cacatggc taattag chr6:159240721-159240741 3 7.89e-05 TG CACCTGGC CCCGAGTCTC chr19:38497269-38497289 5 9.57e-05 agag cacaaggc gtgcgcac chr9:129921704-129921724 11 9.57e-05 CCAAGTCATA CACAAGGC CA chr15:52404489-52404509 9 1.16e-04 AGCAAGGC CACCAGGC GCTG chr19:35933201-35933221 7 1.33e-04 ccgggg cacgtgga tcactt chr8:103110246-103110266 10 1.51e-04 TGCAAAGGG CATGTGGC ATG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACRTGGC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:46507697-46507717 2.1e-05 [+3]_12 chrX:7033847-7033867 2.1e-05 7_[+3]_5 chr15:96472668-96472688 2.1e-05 6_[+3]_6 chr6:43970439-43970459 2.1e-05 2_[+3]_10 chr2:134261012-134261032 3.8e-05 5_[+3]_7 chr6:159240721-159240741 7.9e-05 2_[+3]_10 chr19:38497269-38497289 9.6e-05 4_[+3]_8 chr9:129921704-129921724 9.6e-05 10_[+3]_2 chr15:52404489-52404509 0.00012 8_[+3]_4 chr19:35933201-35933221 0.00013 6_[+3]_6 chr8:103110246-103110266 0.00015 9_[+3]_3 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACRTGGC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CACRTGGC width=8 seqs=11 chr17:46507697-46507717 ( 1) CACGTGGC 1 chrX:7033847-7033867 ( 8) CACGTGGC 1 chr15:96472668-96472688 ( 7) CACGTGGC 1 chr6:43970439-43970459 ( 3) CACGTGGC 1 chr2:134261012-134261032 ( 6) CACATGGC 1 chr6:159240721-159240741 ( 3) CACCTGGC 1 chr19:38497269-38497289 ( 5) CACAAGGC 1 chr9:129921704-129921724 ( 11) CACAAGGC 1 chr15:52404489-52404509 ( 9) CACCAGGC 1 chr19:35933201-35933221 ( 7) CACGTGGA 1 chr8:103110246-103110266 ( 10) CATGTGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACRTGGC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 6.85682 E= 4.7e+001 -1010 189 -1010 -1010 215 -1010 -1010 -1010 -1010 175 -1010 -135 27 -57 100 -1010 27 -1010 -1010 165 -1010 -1010 188 -1010 -1010 -1010 188 -1010 -131 175 -1010 -1010 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACRTGGC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 4.7e+001 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.909091 0.000000 0.090909 0.272727 0.181818 0.545455 0.000000 0.272727 0.000000 0.000000 0.727273 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.090909 0.909091 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACRTGGC MEME-3 regular expression -------------------------------------------------------------------------------- CAC[GA][TA]GGC -------------------------------------------------------------------------------- Time 4.34 secs. ******************************************************************************** ******************************************************************************** MOTIF CCTCTGAS MEME-4 width = 8 sites = 13 llr = 108 E-value = 2.5e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCTCTGAS MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::::::7: pos.-specific C 8a:9:215 probability G 2::::825 matrix T ::a1a::: bits 2.1 * * 1.9 ** * 1.7 ** * 1.5 **** Relative 1.3 ****** Entropy 1.1 ****** (12.0 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCTCTGAG consensus GC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCTGAS MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr13:30948073-30948093 10 1.77e-05 aaagccctt cctctgag ctc chr19:6576896-6576916 11 1.77e-05 taatgtcagg cctctgag ct chr8:142099610-142099630 6 3.53e-05 TGGGG CCTCTGAC CCTGAGT chr9:85341955-85341975 10 3.53e-05 gttcgatca cctctgac aAA chr10:12307582-12307602 2 3.53e-05 g cctctgac aAAGGGACAG chrX:128911550-128911570 6 5.66e-05 AGAAC CCTCTGGG GCTGCCC chrX:118820140-118820160 2 5.66e-05 C CCTCTGGG GAGCCTGAAT chr7:150018080-150018100 3 9.54e-05 ct cctctcag tcctcgtttt chr15:80254693-80254713 10 1.13e-04 GTACATCGT GCTCTGAG ACA chr6:26550592-26550612 3 1.31e-04 tg cctctcac aGAAATCCCG chr21:37915159-37915179 4 2.21e-04 ctg cctctgcc ccAAGGACT chr19:1068287-1068307 2 2.21e-04 G CCTTTGAC CCCTGTGGGG chr22:37638565-37638585 2 2.64e-04 A GCTCTGGG CCTTCCCCTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCTGAS MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr13:30948073-30948093 1.8e-05 9_[+4]_3 chr19:6576896-6576916 1.8e-05 10_[+4]_2 chr8:142099610-142099630 3.5e-05 5_[+4]_7 chr9:85341955-85341975 3.5e-05 9_[+4]_3 chr10:12307582-12307602 3.5e-05 1_[+4]_11 chrX:128911550-128911570 5.7e-05 5_[+4]_7 chrX:118820140-118820160 5.7e-05 1_[+4]_11 chr7:150018080-150018100 9.5e-05 2_[+4]_10 chr15:80254693-80254713 0.00011 9_[+4]_3 chr6:26550592-26550612 0.00013 2_[+4]_10 chr21:37915159-37915179 0.00022 3_[+4]_9 chr19:1068287-1068307 0.00022 1_[+4]_11 chr22:37638565-37638585 0.00026 1_[+4]_11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCTGAS MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCTCTGAS width=8 seqs=13 chr13:30948073-30948093 ( 10) CCTCTGAG 1 chr19:6576896-6576916 ( 11) CCTCTGAG 1 chr8:142099610-142099630 ( 6) CCTCTGAC 1 chr9:85341955-85341975 ( 10) CCTCTGAC 1 chr10:12307582-12307602 ( 2) CCTCTGAC 1 chrX:128911550-128911570 ( 6) CCTCTGGG 1 chrX:118820140-118820160 ( 2) CCTCTGGG 1 chr7:150018080-150018100 ( 3) CCTCTCAG 1 chr15:80254693-80254713 ( 10) GCTCTGAG 1 chr6:26550592-26550612 ( 3) CCTCTCAC 1 chr21:37915159-37915179 ( 4) CCTCTGCC 1 chr19:1068287-1068307 ( 2) CCTTTGAC 1 chr22:37638565-37638585 ( 2) GCTCTGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCTGAS MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.4923 E= 2.5e+002 -1035 165 -82 -1035 -1035 189 -1035 -1035 -1035 -1035 -1035 211 -1035 177 -1035 -159 -1035 -1035 -1035 211 -1035 -81 164 -1035 162 -181 -24 -1035 -1035 77 98 -1035 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCTGAS MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 2.5e+002 0.000000 0.846154 0.153846 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.923077 0.000000 0.076923 0.000000 0.000000 0.000000 1.000000 0.000000 0.153846 0.846154 0.000000 0.692308 0.076923 0.230769 0.000000 0.000000 0.461538 0.538462 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCTGAS MEME-4 regular expression -------------------------------------------------------------------------------- CCTCTG[AG][GC] -------------------------------------------------------------------------------- Time 5.29 secs. ******************************************************************************** ******************************************************************************** MOTIF TAAGACAA MEME-5 width = 8 sites = 4 llr = 42 E-value = 2.4e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TAAGACAA MEME-5 Description -------------------------------------------------------------------------------- Simplified A :aa:a3aa pos.-specific C 3::::8:: probability G :::a:::: matrix T 8::::::: bits 2.1 ** * ** 1.9 **** ** 1.7 **** ** 1.5 **** ** Relative 1.3 ***** ** Entropy 1.1 ******** (15.0 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TAAGACAA consensus C A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAAGACAA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr15:78181590-78181610 11 1.00e-05 AGCCTGGAGG TAAGACAA AG chr5:35317113-35317133 8 1.00e-05 GTTAATT TAAGACAA ATGGC chr15:60878076-60878096 4 1.85e-05 AAT TAAGAAAA TAACTACAA chr3:186734656-186734676 1 3.01e-05 . CAAGACAA GATCACCACG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAAGACAA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr15:78181590-78181610 1e-05 10_[+5]_2 chr5:35317113-35317133 1e-05 7_[+5]_5 chr15:60878076-60878096 1.8e-05 3_[+5]_9 chr3:186734656-186734676 3e-05 [+5]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAAGACAA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TAAGACAA width=8 seqs=4 chr15:78181590-78181610 ( 11) TAAGACAA 1 chr5:35317113-35317133 ( 8) TAAGACAA 1 chr15:60878076-60878096 ( 4) TAAGAAAA 1 chr3:186734656-186734676 ( 1) CAAGACAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAAGACAA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.66445 E= 2.4e+003 -865 -11 -865 169 214 -865 -865 -865 214 -865 -865 -865 -865 -865 188 -865 214 -865 -865 -865 15 147 -865 -865 214 -865 -865 -865 214 -865 -865 -865 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAAGACAA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 2.4e+003 0.000000 0.250000 0.000000 0.750000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.250000 0.750000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAAGACAA MEME-5 regular expression -------------------------------------------------------------------------------- [TC]AAGA[CA]AA -------------------------------------------------------------------------------- Time 6.87 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:200855916-200855936 3.01e-01 20 chr14:93361879-93361899 9.70e-01 20 chr17:75185507-75185527 1.37e-03 9_[+2(1.47e-05)]_3 chr12:27374070-27374090 6.46e-03 5_[+1(1.25e-05)]_7 chr8:102921123-102921143 6.84e-03 2_[+1(1.25e-05)]_10 chr9:99183118-99183138 6.32e-01 20 chr7:105824619-105824639 2.09e-02 1_[+2(1.47e-05)]_11 chr7:139367928-139367948 7.64e-01 20 chr1:1358142-1358162 7.86e-01 20 chr12:124616009-12461602 1.18e-02 8_[+2(1.47e-05)]_4 chr1:169130828-169130848 1.39e-01 20 chr16:29625220-29625240 6.31e-01 20 chr3:13129786-13129806 4.37e-01 20 chr12:31985835-31985855 2.29e-02 11_[+2(1.47e-05)]_1 chr16:22366911-22366931 3.96e-03 6_[+1(1.25e-05)]_6 chr2:160749583-160749603 2.38e-03 2_[+1(1.25e-05)]_10 chr8:101514091-101514111 2.58e-01 20 chr10:82864511-82864531 5.74e-01 20 chr21:43084484-43084504 5.44e-01 20 chr14:50511871-50511891 9.52e-01 20 chr19:19496093-19496113 6.67e-01 20 chr14:103894350-10389437 8.84e-01 20 chr7:120034802-120034822 1.57e-02 2_[+1(6.54e-05)]_10 chr14:34012067-34012087 2.91e-02 20 chr19:35933201-35933221 1.09e-01 20 chr3:119261487-119261507 2.93e-03 3_[+2(1.47e-05)]_9 chrX:19780194-19780214 4.75e-02 20 chr22:42839922-42839942 4.36e-01 20 chr22:31136588-31136608 5.96e-03 4_[+1(2.76e-05)]_8 chr2:233951800-233951820 3.42e-01 20 chrX:118820140-118820160 1.01e-02 1_[+4(5.66e-05)]_11 chr5:159658225-159658245 1.87e-01 20 chr10:12307582-12307602 2.29e-03 1_[+4(3.53e-05)]_11 chr1:247531198-247531218 4.13e-02 20 chr16:11327014-11327034 9.73e-01 20 chr19:35845981-35846001 9.41e-01 20 chr17:75105604-75105624 4.03e-02 20 chr2:201991221-201991241 5.90e-02 20 chr13:100026628-10002664 5.76e-03 [+2(1.47e-05)]_12 chr16:11275982-11276002 3.01e-01 20 chr1:235146604-235146624 3.46e-01 20 chr14:100803236-10080325 3.72e-01 20 chr22:24833864-24833884 3.07e-01 20 chr17:53504632-53504652 5.36e-02 20 chr6:167543658-167543678 3.83e-01 20 chr18:10685544-10685564 6.11e-01 20 chr4:40580106-40580126 3.14e-01 20 chr8:128239254-128239274 3.43e-03 4_[+2(2.95e-05)]_8 chr17:30885436-30885456 1.77e-01 20 chr4:22600249-22600269 5.06e-02 20 chr5:179106280-179106300 9.46e-01 20 chr17:38709492-38709512 3.68e-01 20 chr14:103234715-10323473 1.91e-01 20 chr16:23874059-23874079 8.32e-01 20 chr6:26550592-26550612 1.53e-02 20 chr1:160522374-160522394 5.95e-01 20 chr12:31960162-31960182 3.54e-01 20 chr9:129921704-129921724 2.62e-02 10_[+3(9.57e-05)]_2 chr5:133405430-133405450 1.04e-03 [+2(4.18e-05)]_12 chr8:11365734-11365754 5.27e-01 20 chr11:63302470-63302490 1.47e-01 20 chr7:107830325-107830345 6.94e-01 20 chr19:6576896-6576916 1.68e-02 10_[+4(1.77e-05)]_2 chr15:40374970-40374990 4.06e-01 20 chr3:183229636-183229656 1.89e-03 11_[+1(1.25e-05)]_1 chr7:150018080-150018100 1.21e-01 2_[+4(9.54e-05)]_10 chr21:36045446-36045466 1.66e-01 20 chr9:85341955-85341975 6.21e-03 9_[+4(3.53e-05)]_3 chr1:90975951-90975971 8.31e-01 20 chr3:58097585-58097605 2.93e-01 20 chr15:34628804-34628824 6.80e-01 20 chr11:1331083-1331103 3.66e-01 20 chr17:19091411-19091431 8.78e-01 20 chr11:124940812-12494083 8.89e-01 20 chrX:148206431-148206451 8.57e-01 20 chr17:53510200-53510220 2.15e-01 20 chr4:165857471-165857491 5.95e-01 20 chrX:128911550-128911570 4.38e-02 5_[+4(5.66e-05)]_7 chr6:43970439-43970459 1.40e-02 2_[+3(2.08e-05)]_10 chr1:234735685-234735705 4.32e-01 20 chr4:127093419-127093439 1.13e-02 7_[+2(1.47e-05)]_5 chr17:16825884-16825904 7.68e-01 20 chr22:38610675-38610695 4.25e-01 20 chr19:1068287-1068307 1.66e-02 20 chr6:14077546-14077566 7.86e-01 20 chr17:72631802-72631822 2.90e-01 20 chr3:195910625-195910645 8.84e-01 20 chrX:15901582-15901602 1.94e-01 20 chr6:6592392-6592412 1.91e-01 20 chr19:49631192-49631212 4.57e-01 20 chr5:176829607-176829627 8.75e-01 20 chr17:37956993-37957013 6.89e-01 20 chr12:12961176-12961196 7.81e-01 20 chr18:519198-519218 7.16e-01 20 chr15:80254693-80254713 5.69e-02 20 chr14:74225568-74225588 6.55e-01 20 chr7:156716275-156716295 3.42e-02 [+1(2.76e-05)]_12 chr6:159240721-159240741 4.14e-02 2_[+3(7.89e-05)]_10 chr16:21831641-21831661 8.82e-03 [+2(8.87e-05)]_12 chr17:70600942-70600962 6.84e-01 20 chr10:71867474-71867494 4.48e-01 20 chr7:105980653-105980673 1.43e-01 20 chr2:137063233-137063253 5.37e-02 20 chr1:235108293-235108313 6.83e-01 20 chr16:89126879-89126899 6.38e-01 20 chr11:115798913-11579893 4.53e-01 20 chr6:130945324-130945344 4.39e-03 5_[+1(1.25e-05)]_7 chr3:13053377-13053397 3.48e-01 20 chr4:71781802-71781822 8.57e-01 20 chr17:2143468-2143488 3.00e-01 20 chr14:25175338-25175358 5.44e-01 20 chr15:60878076-60878096 6.44e-03 3_[+5(1.85e-05)]_9 chr9:129881386-129881406 7.15e-01 20 chr16:29086383-29086403 7.52e-01 20 chr9:5566465-5566485 9.19e-01 20 chr19:46854070-46854090 6.23e-01 20 chr10:71168811-71168831 1.87e-01 20 chr6:37527049-37527069 4.71e-01 20 chr2:233989563-233989583 6.62e-02 20 chr1:83945714-83945734 1.70e-01 20 chrX:109415611-109415631 7.00e-01 20 chr5:95064385-95064405 1.69e-03 [+2(1.47e-05)]_12 chr11:65903521-65903541 7.23e-01 20 chr10:27389474-27389494 8.85e-01 20 chr5:142588937-142588957 8.49e-01 20 chr2:113563319-113563339 1.64e-01 20 chr12:109024883-10902490 2.87e-01 20 chr3:10241016-10241036 9.11e-01 20 chr15:96472668-96472688 3.26e-03 6_[+3(2.08e-05)]_6 chr7:5270600-5270620 7.58e-01 20 chr14:69821145-69821165 5.96e-03 20 chr22:33866556-33866576 1.21e-01 20 chr16:68118533-68118553 7.31e-01 20 chr9:99540445-99540465 4.68e-02 20 chr19:30171549-30171569 7.46e-01 20 chr1:31191700-31191720 8.08e-02 20 chr19:39993456-39993476 1.04e-01 20 chr10:49491087-49491107 2.07e-01 20 chr21:45573932-45573952 2.43e-01 20 chr19:35821484-35821504 1.91e-02 20 chr12:92947402-92947422 8.79e-01 20 chr9:134594753-134594773 4.62e-01 20 chr10:21814836-21814856 2.66e-01 20 chr19:14551006-14551026 4.59e-01 20 chr10:74020353-74020373 4.41e-01 20 chr5:156698976-156698996 3.59e-01 20 chr19:10207074-10207094 9.08e-01 20 chr14:60673163-60673183 8.07e-01 20 chr19:38497269-38497289 1.24e-02 4_[+3(9.57e-05)]_8 chr22:24086427-24086447 3.12e-01 20 chr1:101917533-101917553 6.33e-02 20 chr19:50837218-50837238 6.62e-01 20 chr18:39809378-39809398 6.24e-02 20 chr7:18906434-18906454 3.90e-01 20 chr19:43001710-43001730 2.46e-01 20 chr17:70421581-70421601 6.95e-01 20 chr22:44464639-44464659 1.20e-01 20 chr22:22959265-22959285 2.59e-01 20 chr22:50981090-50981110 6.73e-01 20 chr7:150077674-150077694 3.79e-01 20 chr8:30823957-30823977 3.25e-02 1_[+1(5.29e-05)]_11 chr16:30389217-30389237 8.05e-01 20 chrX:7033847-7033867 7.67e-03 7_[+3(2.08e-05)]_5 chr17:56310316-56310336 7.42e-01 20 chr5:179246568-179246588 3.20e-01 20 chr2:208199693-208199713 1.05e-01 20 chrX:129403005-129403025 9.70e-01 20 chr17:55435285-55435305 8.37e-01 20 chr12:108959965-10895998 8.11e-01 20 chr21:43837794-43837814 6.75e-01 20 chr6:149354843-149354863 8.96e-01 20 chr1:171585910-171585930 1.34e-01 20 chr22:43253439-43253459 5.63e-01 20 chr20:4793966-4793986 3.86e-01 20 chr11:59041208-59041228 9.25e-03 1_[+1(1.25e-05)]_11 chr3:160167796-160167816 6.48e-01 20 chr5:35317113-35317133 9.92e-04 7_[+5(1.00e-05)]_5 chr7:156433160-156433180 7.36e-01 20 chr1:154833164-154833184 5.32e-02 20 chr13:25199595-25199615 6.48e-03 4_[+1(1.25e-05)]_8 chr10:81003610-81003630 9.95e-01 20 chr3:186734656-186734676 1.74e-02 [+5(3.01e-05)]_12 chr2:96890889-96890909 8.23e-02 20 chr8:142099610-142099630 3.44e-02 5_[+4(3.53e-05)]_7 chr15:52404489-52404509 1.39e-02 20 chr3:48264149-48264169 1.12e-01 20 chrX:1600739-1600759 6.87e-02 20 chr17:17597667-17597687 2.12e-01 20 chr20:50021450-50021470 5.35e-01 20 chr22:37638565-37638585 1.81e-01 20 chr2:101012125-101012145 7.61e-02 20 chr2:38760538-38760558 9.51e-01 20 chr5:149104213-149104233 1.99e-01 20 chr16:11172039-11172059 9.80e-01 20 chr1:26202177-26202197 6.90e-01 20 chr6:15770971-15770991 3.76e-01 20 chr6:2892086-2892106 1.24e-01 20 chr17:33378365-33378385 2.14e-01 20 chr1:210573991-210574011 1.57e-01 20 chr17:66255435-66255455 2.51e-02 20 chr5:131762340-131762360 7.50e-02 20 chr6:10404893-10404913 8.79e-01 20 chr9:140164038-140164058 7.50e-01 20 chr15:96407911-96407931 8.92e-01 20 chr17:46507697-46507717 7.61e-03 [+3(2.08e-05)]_12 chr21:45575949-45575969 3.07e-01 20 chr15:78181590-78181610 1.44e-03 10_[+5(1.00e-05)]_2 chr8:103110246-103110266 6.86e-03 20 chr5:5523352-5523372 7.06e-01 20 chr1:171569756-171569776 6.39e-01 20 chr2:237454742-237454762 8.91e-01 20 chr1:27433207-27433227 7.14e-01 20 chr11:330606-330626 3.96e-02 20 chr16:11300725-11300745 5.77e-01 20 chr15:101804353-10180437 3.01e-01 20 chr2:227700633-227700653 9.39e-01 20 chr15:35286234-35286254 3.95e-01 20 chr9:139969563-139969583 9.49e-01 20 chr13:30948073-30948093 3.27e-02 9_[+4(1.77e-05)]_3 chr9:6051706-6051726 3.90e-01 20 chr10:99473899-99473919 5.16e-01 20 chr14:98693649-98693669 2.39e-01 20 chr21:37915159-37915179 6.44e-03 20 chrX:1587225-1587245 6.07e-01 20 chr5:169064982-169065002 2.95e-01 20 chr7:2393641-2393661 8.09e-01 20 chrX:128907159-128907179 6.85e-01 20 chr16:4588915-4588935 7.56e-01 20 chr17:38254572-38254592 2.26e-01 20 chr20:5567513-5567533 6.07e-01 20 chr10:126386878-12638689 2.43e-01 20 chr13:100033308-10003332 3.79e-02 20 chr13:33718795-33718815 1.53e-01 20 chr6:22373280-22373300 7.08e-01 20 chr14:90798087-90798107 2.30e-01 20 chr11:72865390-72865410 2.07e-01 20 chr10:75541785-75541805 5.31e-01 20 chr16:21531939-21531959 7.30e-01 20 chr3:58188766-58188786 7.73e-01 20 chr22:42335145-42335165 2.42e-01 20 chr15:31555701-31555721 3.42e-01 20 chr1:67637418-67637438 9.47e-01 20 chr16:745653-745673 8.10e-01 20 chr2:134261012-134261032 2.28e-02 5_[+3(3.80e-05)]_7 chr21:34814321-34814341 9.76e-01 20 chr10:88438958-88438978 3.57e-01 20 chr12:53895327-53895347 7.81e-01 20 chr17:18967156-18967176 8.19e-01 20 chr11:117856835-11785685 9.43e-01 20 chr10:73507748-73507768 1.33e-01 20 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n04.farnam.hpc.yale.internal ********************************************************************************