******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/ZNF592.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2:110395379-110395399 1.0000 20 chrX:55893407-55893427 1.0000 20 chr5:157345471-157345491 1.0000 20 chr4:156630146-156630166 1.0000 20 chr8:42124074-42124094 1.0000 20 chr9:37404333-37404353 1.0000 20 chr8:29304497-29304517 1.0000 20 chr9:80507986-80508006 1.0000 20 chr5:76028405-76028425 1.0000 20 chr15:96601504-96601524 1.0000 20 chr11:85968699-85968719 1.0000 20 chr13:109335315-10933533 1.0000 20 chr6:157955339-157955359 1.0000 20 chr12:27374093-27374113 1.0000 20 chrX:108430347-108430367 1.0000 20 chr5:1132058-1132078 1.0000 20 chr1:200855919-200855939 1.0000 20 chr2:120096574-120096594 1.0000 20 chr8:102921117-102921137 1.0000 20 chr18:3154398-3154418 1.0000 20 chr9:99183130-99183150 1.0000 20 chr14:72477395-72477415 1.0000 20 chr17:75185519-75185539 1.0000 20 chr14:93361882-93361902 1.0000 20 chr1:1358127-1358147 1.0000 20 chr3:119261482-119261502 1.0000 20 chr12:110488129-11048814 1.0000 20 chr5:133405419-133405439 1.0000 20 chr4:40580109-40580129 1.0000 20 chr6:27028080-27028100 1.0000 20 chrX:19780195-19780215 1.0000 20 chr8:90809088-90809108 1.0000 20 chr19:35838366-35838386 1.0000 20 chr10:75503301-75503321 1.0000 20 chr4:22600272-22600292 1.0000 20 chr1:171585938-171585958 1.0000 20 chr22:37373697-37373717 1.0000 20 chr2:172179589-172179609 1.0000 20 chr17:75105616-75105636 1.0000 20 chr12:31985825-31985845 1.0000 20 chr12:39271587-39271607 1.0000 20 chr1:185310668-185310688 1.0000 20 chr2:208199673-208199693 1.0000 20 chr7:105824615-105824635 1.0000 20 chr18:39809351-39809371 1.0000 20 chr6:15905115-15905135 1.0000 20 chr13:100026593-10002661 1.0000 20 chr10:12307568-12307588 1.0000 20 chr7:120034814-120034834 1.0000 20 chr16:23874077-23874097 1.0000 20 chr17:53510222-53510242 1.0000 20 chr1:169130828-169130848 1.0000 20 chr22:39507374-39507394 1.0000 20 chr8:145116045-145116065 1.0000 20 chr10:18709053-18709073 1.0000 20 chr2:113541060-113541080 1.0000 20 chr15:34628820-34628840 1.0000 20 chr5:158381914-158381934 1.0000 20 chr22:42839922-42839942 1.0000 20 chr6:15896465-15896485 1.0000 20 chr16:10870966-10870986 1.0000 20 chr8:27234001-27234021 1.0000 20 chr21:45633770-45633790 1.0000 20 chr20:30484088-30484108 1.0000 20 chr6:26550540-26550560 1.0000 20 chr2:160749558-160749578 1.0000 20 chr1:67637420-67637440 1.0000 20 chr16:22366910-22366930 1.0000 20 chr12:124616016-12461603 1.0000 20 chr21:30604626-30604646 1.0000 20 chr5:10634883-10634903 1.0000 20 chr5:124246245-124246265 1.0000 20 chr8:101514083-101514103 1.0000 20 chr17:12342222-12342242 1.0000 20 chrX:11812011-11812031 1.0000 20 chr5:169237759-169237779 1.0000 20 chr6:14077550-14077570 1.0000 20 chr4:144284045-144284065 1.0000 20 chr1:101917521-101917541 1.0000 20 chr17:16825876-16825896 1.0000 20 chr9:139969559-139969579 1.0000 20 chr13:68604718-68604738 1.0000 20 chr3:58022570-58022590 1.0000 20 chr13:33767638-33767658 1.0000 20 chr19:48753750-48753770 1.0000 20 chr3:183239061-183239081 1.0000 20 chr22:31136557-31136577 1.0000 20 chr7:105980655-105980675 1.0000 20 chr10:82864532-82864552 1.0000 20 chr1:222135914-222135934 1.0000 20 chr3:69377558-69377578 1.0000 20 chr3:15423214-15423234 1.0000 20 chr12:29843840-29843860 1.0000 20 chr6:11496207-11496227 1.0000 20 chr4:71781759-71781779 1.0000 20 chr1:247531191-247531211 1.0000 20 chr14:103894365-10389438 1.0000 20 chr6:15693052-15693072 1.0000 20 chr7:121030344-121030364 1.0000 20 chr8:52362990-52363010 1.0000 20 chr8:29272636-29272656 1.0000 20 chr6:41311553-41311573 1.0000 20 chr12:39286962-39286982 1.0000 20 chr2:189099610-189099630 1.0000 20 chr15:42896332-42896352 1.0000 20 chr8:128318685-128318705 1.0000 20 chr1:160621984-160622004 1.0000 20 chr2:152237314-152237334 1.0000 20 chr22:24085143-24085163 1.0000 20 chr11:72863729-72863749 1.0000 20 chr11:63302445-63302465 1.0000 20 chr5:35317113-35317133 1.0000 20 chr8:50023254-50023274 1.0000 20 chr9:38091712-38091732 1.0000 20 chr5:178506285-178506305 1.0000 20 chr8:11391702-11391722 1.0000 20 chr19:6576888-6576908 1.0000 20 chr1:225654707-225654727 1.0000 20 chrX:148206436-148206456 1.0000 20 chr1:8998676-8998696 1.0000 20 chr8:101510649-101510669 1.0000 20 chr19:36674099-36674119 1.0000 20 chr3:45106755-45106775 1.0000 20 chr3:141031537-141031557 1.0000 20 chr2:179962998-179963018 1.0000 20 chr1:180880862-180880882 1.0000 20 chr19:6579536-6579556 1.0000 20 chr2:201991210-201991230 1.0000 20 chr13:23449139-23449159 1.0000 20 chr4:48237276-48237296 1.0000 20 chr19:48757990-48758010 1.0000 20 chr13:25199593-25199613 1.0000 20 chr19:36672571-36672591 1.0000 20 chr2:160747941-160747961 1.0000 20 chr19:43001114-43001134 1.0000 20 chr3:98464739-98464759 1.0000 20 chr7:89852943-89852963 1.0000 20 chr4:106087416-106087436 1.0000 20 chr22:24086904-24086924 1.0000 20 chr5:95146742-95146762 1.0000 20 chr7:93787375-93787395 1.0000 20 chr4:143314463-143314483 1.0000 20 chr4:162264908-162264928 1.0000 20 chr1:90709110-90709130 1.0000 20 chr15:40342559-40342579 1.0000 20 chr19:36673071-36673091 1.0000 20 chr20:6833310-6833330 1.0000 20 chr11:102452987-10245300 1.0000 20 chr7:154656310-154656330 1.0000 20 chr11:109854289-10985430 1.0000 20 chr2:8588103-8588123 1.0000 20 chr3:183229648-183229668 1.0000 20 chr2:123394460-123394480 1.0000 20 chr6:26241317-26241337 1.0000 20 chr5:5523353-5523373 1.0000 20 chr1:230274778-230274798 1.0000 20 chr5:132002601-132002621 1.0000 20 chr1:22118714-22118734 1.0000 20 chr2:208197726-208197746 1.0000 20 chr2:198124392-198124412 1.0000 20 chr9:85341974-85341994 1.0000 20 chr9:123981133-123981153 1.0000 20 chr6:86082470-86082490 1.0000 20 chr1:53101530-53101550 1.0000 20 chr6:137692585-137692605 1.0000 20 chrX:15901615-15901635 1.0000 20 chr13:52732977-52732997 1.0000 20 chr5:149182936-149182956 1.0000 20 chr18:13576830-13576850 1.0000 20 chr4:127093422-127093442 1.0000 20 chr6:29529754-29529774 1.0000 20 chr13:43615601-43615621 1.0000 20 chr1:160522352-160522372 1.0000 20 chr6:82241751-82241771 1.0000 20 chr20:36170920-36170940 1.0000 20 chr7:64682239-64682259 1.0000 20 chr3:150317824-150317844 1.0000 20 chr1:191665252-191665272 1.0000 20 chr12:11774879-11774899 1.0000 20 chr8:30823944-30823964 1.0000 20 chr19:36673640-36673660 1.0000 20 chr5:78059652-78059672 1.0000 20 chr7:46562301-46562321 1.0000 20 chr8:41676549-41676569 1.0000 20 chr2:17982590-17982610 1.0000 20 chr1:212651648-212651668 1.0000 20 chr22:24085686-24085706 1.0000 20 chr7:156716283-156716303 1.0000 20 chr10:75939068-75939088 1.0000 20 chr1:160523694-160523714 1.0000 20 chr14:71757852-71757872 1.0000 20 chr5:95064368-95064388 1.0000 20 chr2:197317702-197317722 1.0000 20 chr9:134594717-134594737 1.0000 20 chr6:2859522-2859542 1.0000 20 chr8:42213142-42213162 1.0000 20 chr1:55428875-55428895 1.0000 20 chr1:46409012-46409032 1.0000 20 chr20:49125541-49125561 1.0000 20 chr2:231519593-231519613 1.0000 20 chr19:7598918-7598938 1.0000 20 chr1:155277167-155277187 1.0000 20 chr5:142588905-142588925 1.0000 20 chrX:153267878-153267898 1.0000 20 chr12:25103336-25103356 1.0000 20 chr10:34064710-34064730 1.0000 20 chr6:130945320-130945340 1.0000 20 chr22:24086267-24086287 1.0000 20 chr12:106160023-10616004 1.0000 20 chr3:101362831-101362851 1.0000 20 chr2:95743163-95743183 1.0000 20 chr15:35286219-35286239 1.0000 20 chr1:25354885-25354905 1.0000 20 chr3:127451826-127451846 1.0000 20 chr4:3048520-3048540 1.0000 20 chr14:97852248-97852268 1.0000 20 chr6:110908700-110908720 1.0000 20 chrX:6229742-6229762 1.0000 20 chr2:86117770-86117790 1.0000 20 chr11:62380059-62380079 1.0000 20 chr14:53168237-53168257 1.0000 20 chr11:107550531-10755055 1.0000 20 chr16:74131878-74131898 1.0000 20 chrX:2243310-2243330 1.0000 20 chr14:103234707-10323472 1.0000 20 chrX:39733634-39733654 1.0000 20 chr7:92778280-92778300 1.0000 20 chr6:13434409-13434429 1.0000 20 chr15:86033122-86033142 1.0000 20 chr11:88616205-88616225 1.0000 20 chr5:178507883-178507903 1.0000 20 chr22:39504720-39504740 1.0000 20 chr2:191535444-191535464 1.0000 20 chr2:203007451-203007471 1.0000 20 chr5:146719802-146719822 1.0000 20 chr1:98953373-98953393 1.0000 20 chr12:11990672-11990692 1.0000 20 chr14:106627062-10662708 1.0000 20 chr22:42332709-42332729 1.0000 20 chr11:88037748-88037768 1.0000 20 chr15:22436248-22436268 1.0000 20 chr1:46785952-46785972 1.0000 20 chr5:142598531-142598551 1.0000 20 chr9:5566512-5566532 1.0000 20 chr10:30714460-30714480 1.0000 20 chr1:86965858-86965878 1.0000 20 chr17:73319958-73319978 1.0000 20 chr12:123236290-12323631 1.0000 20 chr14:72422576-72422596 1.0000 20 chr1:182730608-182730628 1.0000 20 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/GM12878/inference_raw/MEME/RankLinear0.6_10_ZNF592/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/ZNF592.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 5000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 5000 norand= no csites= 1000 Letter frequencies in dataset: A 0.286 C 0.21 G 0.229 T 0.275 Background letter frequencies (from file dataset with add-one prior applied): A 0.286 C 0.21 G 0.229 T 0.275 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF ATGGAGTY MEME-1 width = 8 sites = 31 llr = 286 E-value = 4.6e-035 ******************************************************************************** -------------------------------------------------------------------------------- Motif ATGGAGTY MEME-1 Description -------------------------------------------------------------------------------- Simplified A a:::8::: pos.-specific C ::::1::5 probability G ::aa:a:1 matrix T :a::::a3 bits 2.3 2.0 ** * 1.8 **** * 1.6 **** ** Relative 1.4 **** ** Entropy 1.1 **** ** (13.3 bits) 0.9 ******* 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel ATGGAGTC consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGGAGTY MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr6:110908700-110908720 1 1.56e-05 . atggagtc actcatgcta chr15:35286219-35286239 10 1.56e-05 gaaagtaag atggagtc gat chr7:156716283-156716303 12 1.56e-05 tttttctaag atggagtc a chr6:86082470-86082490 10 1.56e-05 caacacaaa atggagtc act chr1:22118714-22118734 2 1.56e-05 g atggagtc attctggtca chr4:143314463-143314483 9 1.56e-05 aaaccaaa atggagtc actt chr13:23449139-23449159 2 1.56e-05 a atggagtc actcatgcta chr3:58022570-58022590 10 1.56e-05 agaagcaag atggagtc ggt chr17:16825876-16825896 1 1.56e-05 . atggagtc agtctggttc chr17:12342222-12342242 10 1.56e-05 TGTCTCAAA ATGGAGTC ACT chr16:22366910-22366930 9 1.56e-05 aaaccaaa atggagtc actt chr6:15896465-15896485 8 1.56e-05 attcaag atggagtc actct chr8:102921117-102921137 10 1.56e-05 caaatcaaa atggagtc act chr8:29304497-29304517 7 1.56e-05 accaaa atggagtc actcat chr2:203007451-203007471 4 3.60e-05 aag atggagtt ggttaggtc chr3:183229648-183229668 1 3.60e-05 . atggagtt tcttatgtct chr13:25199593-25199613 8 3.60e-05 aaccaaa atggagtt actcc chr3:141031537-141031557 8 3.60e-05 tgctaag atggagtt actta chr15:42896332-42896352 10 3.60e-05 agaagtaag atggagtt gct chr3:15423214-15423234 5 3.60e-05 caaa atggagtt agtcacgc chr3:183239061-183239081 6 3.60e-05 acaaa atggagtt tcttatg chr6:15905115-15905135 5 3.60e-05 caag atggagtt ggttaggt chr6:157955339-157955359 9 3.60e-05 AAAGCAAA ATGGAGTT ACTT chr14:97852248-97852268 6 5.30e-05 ataag atggagtg aggctgg chr20:36170920-36170940 12 6.45e-05 TCACTTCAAG ATGGCGTC A chr6:130945320-130945340 11 1.25e-04 cagagtcaaa atggagta aa chr13:109335315-10933533 2 1.25e-04 g atggagcc actaatgtca chrX:11812011-11812031 10 1.40e-04 TGTCTCAAA ATGGTGTC ACT chr5:10634883-10634903 2 1.53e-04 T ATGGCGTG TGTTTGGGTT chr2:208199673-208199693 10 1.53e-04 TGCCAGGAA ATGGCGTG AGT chr1:98953373-98953393 9 1.69e-04 tttataaa atggggtt agtt -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGGAGTY MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:110908700-110908720 1.6e-05 [+1]_12 chr15:35286219-35286239 1.6e-05 9_[+1]_3 chr7:156716283-156716303 1.6e-05 11_[+1]_1 chr6:86082470-86082490 1.6e-05 9_[+1]_3 chr1:22118714-22118734 1.6e-05 1_[+1]_11 chr4:143314463-143314483 1.6e-05 8_[+1]_4 chr13:23449139-23449159 1.6e-05 1_[+1]_11 chr3:58022570-58022590 1.6e-05 9_[+1]_3 chr17:16825876-16825896 1.6e-05 [+1]_12 chr17:12342222-12342242 1.6e-05 9_[+1]_3 chr16:22366910-22366930 1.6e-05 8_[+1]_4 chr6:15896465-15896485 1.6e-05 7_[+1]_5 chr8:102921117-102921137 1.6e-05 9_[+1]_3 chr8:29304497-29304517 1.6e-05 6_[+1]_6 chr2:203007451-203007471 3.6e-05 3_[+1]_9 chr3:183229648-183229668 3.6e-05 [+1]_12 chr13:25199593-25199613 3.6e-05 7_[+1]_5 chr3:141031537-141031557 3.6e-05 7_[+1]_5 chr15:42896332-42896352 3.6e-05 9_[+1]_3 chr3:15423214-15423234 3.6e-05 4_[+1]_8 chr3:183239061-183239081 3.6e-05 5_[+1]_7 chr6:15905115-15905135 3.6e-05 4_[+1]_8 chr6:157955339-157955359 3.6e-05 8_[+1]_4 chr14:97852248-97852268 5.3e-05 5_[+1]_7 chr20:36170920-36170940 6.4e-05 11_[+1]_1 chr6:130945320-130945340 0.00013 10_[+1]_2 chr13:109335315-10933533 0.00013 1_[+1]_11 chrX:11812011-11812031 0.00014 9_[+1]_3 chr5:10634883-10634903 0.00015 1_[+1]_11 chr2:208199673-208199693 0.00015 9_[+1]_3 chr1:98953373-98953393 0.00017 8_[+1]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGGAGTY MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ATGGAGTY width=8 seqs=31 chr6:110908700-110908720 ( 1) ATGGAGTC 1 chr15:35286219-35286239 ( 10) ATGGAGTC 1 chr7:156716283-156716303 ( 12) ATGGAGTC 1 chr6:86082470-86082490 ( 10) ATGGAGTC 1 chr1:22118714-22118734 ( 2) ATGGAGTC 1 chr4:143314463-143314483 ( 9) ATGGAGTC 1 chr13:23449139-23449159 ( 2) ATGGAGTC 1 chr3:58022570-58022590 ( 10) ATGGAGTC 1 chr17:16825876-16825896 ( 1) ATGGAGTC 1 chr17:12342222-12342242 ( 10) ATGGAGTC 1 chr16:22366910-22366930 ( 9) ATGGAGTC 1 chr6:15896465-15896485 ( 8) ATGGAGTC 1 chr8:102921117-102921137 ( 10) ATGGAGTC 1 chr8:29304497-29304517 ( 7) ATGGAGTC 1 chr2:203007451-203007471 ( 4) ATGGAGTT 1 chr3:183229648-183229668 ( 1) ATGGAGTT 1 chr13:25199593-25199613 ( 8) ATGGAGTT 1 chr3:141031537-141031557 ( 8) ATGGAGTT 1 chr15:42896332-42896352 ( 10) ATGGAGTT 1 chr3:15423214-15423234 ( 5) ATGGAGTT 1 chr3:183239061-183239081 ( 6) ATGGAGTT 1 chr6:15905115-15905135 ( 5) ATGGAGTT 1 chr6:157955339-157955359 ( 9) ATGGAGTT 1 chr14:97852248-97852268 ( 6) ATGGAGTG 1 chr20:36170920-36170940 ( 12) ATGGCGTC 1 chr6:130945320-130945340 ( 11) ATGGAGTA 1 chr13:109335315-10933533 ( 2) ATGGAGCC 1 chrX:11812011-11812031 ( 10) ATGGTGTC 1 chr5:10634883-10634903 ( 2) ATGGCGTG 1 chr2:208199673-208199693 ( 10) ATGGCGTG 1 chr1:98953373-98953393 ( 9) ATGGGGTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGGAGTY MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 6.66108 E= 4.6e-035 181 -1160 -1160 -1160 -1160 -1160 -1160 186 -1160 -1160 212 -1160 -1160 -1160 212 -1160 155 -112 -283 -309 -1160 -1160 212 -1160 -1160 -270 -1160 181 -314 139 -124 23 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGGAGTY MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 31 E= 4.6e-035 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.838710 0.096774 0.032258 0.032258 0.000000 0.000000 1.000000 0.000000 0.000000 0.032258 0.000000 0.967742 0.032258 0.548387 0.096774 0.322581 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATGGAGTY MEME-1 regular expression -------------------------------------------------------------------------------- ATGGAGT[CT] -------------------------------------------------------------------------------- Time 2.56 secs. ******************************************************************************** ******************************************************************************** MOTIF TCCATYTT MEME-2 width = 8 sites = 26 llr = 236 E-value = 5.3e-024 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCCATYTT MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::9:::: pos.-specific C :aa1:5:1 probability G 1::::1:: matrix T 9:::a3a9 bits 2.3 ** 2.0 ** 1.8 ** * * 1.6 *** * * Relative 1.4 ***** ** Entropy 1.1 ***** ** (13.1 bits) 0.9 ***** ** 0.7 ***** ** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TCCATCTT consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCATYTT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:2243310-2243330 4 1.51e-05 ggc tccatctt ccGggcagg chr3:127451826-127451846 2 1.51e-05 c tccatctt gaacgggggc chr2:231519593-231519613 11 1.51e-05 ccacagcaac tccatctt ga chr10:75939068-75939088 12 1.51e-05 ccagagcgac tccatctt g chr7:46562301-46562321 12 1.51e-05 ccagagtcac tccatctt g chr1:191665252-191665272 13 1.51e-05 cctaaccatc tccatctt chr13:52732977-52732997 10 1.51e-05 atgactgac tccatctt gct chr2:189099610-189099630 6 1.51e-05 gcaac tccatctt gaatagg chr5:169237759-169237779 11 1.51e-05 cgcaagcgac tccatctt gg chr3:119261482-119261502 12 1.51e-05 cttaactgac tccatctt g chr5:1132058-1132078 1 1.51e-05 . tccatctt gaacaggggc chr8:42124074-42124094 12 1.51e-05 ccagagcaac tccatctt g chr9:123981133-123981153 1 3.50e-05 . tccatttt gtgagagttt chr4:162264908-162264928 13 3.50e-05 CATGAGTGAC TCCATTTT chr1:160621984-160622004 12 3.50e-05 cataagagac tccatttt g chr22:39507374-39507394 11 3.50e-05 ccggacagac tccatttt ag chr7:105824615-105824635 9 3.50e-05 caagtgac tccatttt gatt chr17:75185519-75185539 1 3.50e-05 . tccatttt ggtttggtct chr4:127093422-127093442 8 5.15e-05 cagtgac tccatgtt ggtta chr12:124616016-12461603 5 6.31e-05 cgac tccatctc gcttctaa chr4:106087416-106087436 3 1.37e-04 AT TCCCTTTT GCTAAATTCT chr3:69377558-69377578 4 1.37e-04 gtg tccctttt tccccagag chr18:39809351-39809371 2 1.37e-04 T TCCATATt gctttggtga chr14:72477395-72477415 2 1.66e-04 t tccatgtc accttccaat chr6:27028080-27028100 2 1.92e-04 a gccatgtt tcttacaTAT chr18:13576830-13576850 1 2.10e-04 . GCCATCTC AGGAGGGCCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCATYTT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:2243310-2243330 1.5e-05 3_[+2]_9 chr3:127451826-127451846 1.5e-05 1_[+2]_11 chr2:231519593-231519613 1.5e-05 10_[+2]_2 chr10:75939068-75939088 1.5e-05 11_[+2]_1 chr7:46562301-46562321 1.5e-05 11_[+2]_1 chr1:191665252-191665272 1.5e-05 12_[+2] chr13:52732977-52732997 1.5e-05 9_[+2]_3 chr2:189099610-189099630 1.5e-05 5_[+2]_7 chr5:169237759-169237779 1.5e-05 10_[+2]_2 chr3:119261482-119261502 1.5e-05 11_[+2]_1 chr5:1132058-1132078 1.5e-05 [+2]_12 chr8:42124074-42124094 1.5e-05 11_[+2]_1 chr9:123981133-123981153 3.5e-05 [+2]_12 chr4:162264908-162264928 3.5e-05 12_[+2] chr1:160621984-160622004 3.5e-05 11_[+2]_1 chr22:39507374-39507394 3.5e-05 10_[+2]_2 chr7:105824615-105824635 3.5e-05 8_[+2]_4 chr17:75185519-75185539 3.5e-05 [+2]_12 chr4:127093422-127093442 5.2e-05 7_[+2]_5 chr12:124616016-12461603 6.3e-05 4_[+2]_8 chr4:106087416-106087436 0.00014 2_[+2]_10 chr3:69377558-69377578 0.00014 3_[+2]_9 chr18:39809351-39809371 0.00014 1_[+2]_11 chr14:72477395-72477415 0.00017 1_[+2]_11 chr6:27028080-27028100 0.00019 1_[+2]_11 chr18:13576830-13576850 0.00021 [+2]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCATYTT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCCATYTT width=8 seqs=26 chrX:2243310-2243330 ( 4) TCCATCTT 1 chr3:127451826-127451846 ( 2) TCCATCTT 1 chr2:231519593-231519613 ( 11) TCCATCTT 1 chr10:75939068-75939088 ( 12) TCCATCTT 1 chr7:46562301-46562321 ( 12) TCCATCTT 1 chr1:191665252-191665272 ( 13) TCCATCTT 1 chr13:52732977-52732997 ( 10) TCCATCTT 1 chr2:189099610-189099630 ( 6) TCCATCTT 1 chr5:169237759-169237779 ( 11) TCCATCTT 1 chr3:119261482-119261502 ( 12) TCCATCTT 1 chr5:1132058-1132078 ( 1) TCCATCTT 1 chr8:42124074-42124094 ( 12) TCCATCTT 1 chr9:123981133-123981153 ( 1) TCCATTTT 1 chr4:162264908-162264928 ( 13) TCCATTTT 1 chr1:160621984-160622004 ( 12) TCCATTTT 1 chr22:39507374-39507394 ( 11) TCCATTTT 1 chr7:105824615-105824635 ( 9) TCCATTTT 1 chr17:75185519-75185539 ( 1) TCCATTTT 1 chr4:127093422-127093442 ( 8) TCCATGTT 1 chr12:124616016-12461603 ( 5) TCCATCTC 1 chr4:106087416-106087436 ( 3) TCCCTTTT 1 chr3:69377558-69377578 ( 4) TCCCTTTT 1 chr18:39809351-39809371 ( 2) TCCATATT 1 chr14:72477395-72477415 ( 2) TCCATGTC 1 chr6:27028080-27028100 ( 2) GCCATGTT 1 chr18:13576830-13576850 ( 1) GCCATCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCATYTT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 6.70763 E= 5.3e-024 -1134 -1134 -157 175 -1134 225 -1134 -1134 -1134 225 -1134 -1134 169 -145 -1134 -1134 -1134 -1134 -1134 186 -289 136 -99 16 -1134 -1134 -1134 186 -1134 -86 -1134 168 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCATYTT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 26 E= 5.3e-024 0.000000 0.000000 0.076923 0.923077 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.923077 0.076923 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.038462 0.538462 0.115385 0.307692 0.000000 0.000000 0.000000 1.000000 0.000000 0.115385 0.000000 0.884615 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCATYTT MEME-2 regular expression -------------------------------------------------------------------------------- TCCAT[CT]TT -------------------------------------------------------------------------------- Time 3.32 secs. ******************************************************************************** ******************************************************************************** MOTIF TGTCAGAG MEME-3 width = 8 sites = 14 llr = 136 E-value = 1.4e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGTCAGAG MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::1:a191 pos.-specific C :::a:::: probability G :a:::919 matrix T a:9::::: bits 2.3 * 2.0 * * 1.8 ** *** 1.6 ****** * Relative 1.4 ******** Entropy 1.1 ******** (14.0 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TGTCAGAG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTCAGAG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:92778280-92778300 4 1.56e-05 TAA tgtcagag acattcgaa chr3:101362831-101362851 3 1.56e-05 ga tgtcagag ctgttagaac chr6:29529754-29529774 7 1.56e-05 CTAAAG tgtcagag gtgttt chr12:39286962-39286982 6 1.56e-05 AACAC tgtcagag gtgtttg chr8:29272636-29272656 9 1.56e-05 agcagagt tgtcagag gtgt chr6:14077550-14077570 13 1.56e-05 TATATGGTTG tgtcagag chr8:90809088-90809108 10 1.56e-05 aagtgccta tgtcagag gtg chr9:99183130-99183150 1 1.56e-05 . tgtcagag gcctgtgaac chr9:38091712-38091732 9 2.81e-05 CAGCTTGG TGTCAGGG CCCT chr14:93361882-93361902 4 2.81e-05 att tgtcaggg ttttcttag chr12:11774879-11774899 7 4.76e-05 aggaac tgtcagaa gcactt chr2:8588103-8588123 11 4.76e-05 AAGTGAGTTC tgtcagaa gc chr5:142588905-142588925 7 6.38e-05 CCAGAT TGACAGAG GGCAAT chr9:80507986-80508006 6 8.33e-05 CATGA tgtcaaag ggtttca -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTCAGAG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:92778280-92778300 1.6e-05 3_[+3]_9 chr3:101362831-101362851 1.6e-05 2_[+3]_10 chr6:29529754-29529774 1.6e-05 6_[+3]_6 chr12:39286962-39286982 1.6e-05 5_[+3]_7 chr8:29272636-29272656 1.6e-05 8_[+3]_4 chr6:14077550-14077570 1.6e-05 12_[+3] chr8:90809088-90809108 1.6e-05 9_[+3]_3 chr9:99183130-99183150 1.6e-05 [+3]_12 chr9:38091712-38091732 2.8e-05 8_[+3]_4 chr14:93361882-93361902 2.8e-05 3_[+3]_9 chr12:11774879-11774899 4.8e-05 6_[+3]_6 chr2:8588103-8588123 4.8e-05 10_[+3]_2 chr5:142588905-142588925 6.4e-05 6_[+3]_6 chr9:80507986-80508006 8.3e-05 5_[+3]_7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTCAGAG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGTCAGAG width=8 seqs=14 chr7:92778280-92778300 ( 4) TGTCAGAG 1 chr3:101362831-101362851 ( 3) TGTCAGAG 1 chr6:29529754-29529774 ( 7) TGTCAGAG 1 chr12:39286962-39286982 ( 6) TGTCAGAG 1 chr8:29272636-29272656 ( 9) TGTCAGAG 1 chr6:14077550-14077570 ( 13) TGTCAGAG 1 chr8:90809088-90809108 ( 10) TGTCAGAG 1 chr9:99183130-99183150 ( 1) TGTCAGAG 1 chr9:38091712-38091732 ( 9) TGTCAGGG 1 chr14:93361882-93361902 ( 4) TGTCAGGG 1 chr12:11774879-11774899 ( 7) TGTCAGAA 1 chr2:8588103-8588123 ( 11) TGTCAGAA 1 chr5:142588905-142588925 ( 7) TGACAGAG 1 chr9:80507986-80508006 ( 6) TGTCAAAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTCAGAG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 7.69581 E= 1.4e-008 -1045 -1045 -1045 186 -1045 -1045 212 -1045 -200 -1045 -1045 175 -1045 225 -1045 -1045 181 -1045 -1045 -1045 -200 -1045 202 -1045 158 -1045 -68 -1045 -100 -1045 190 -1045 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTCAGAG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 1.4e-008 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.071429 0.000000 0.000000 0.928571 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.071429 0.000000 0.928571 0.000000 0.857143 0.000000 0.142857 0.000000 0.142857 0.000000 0.857143 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTCAGAG MEME-3 regular expression -------------------------------------------------------------------------------- TGTCAGAG -------------------------------------------------------------------------------- Time 4.06 secs. ******************************************************************************** ******************************************************************************** MOTIF TCTGGTTC MEME-4 width = 8 sites = 10 llr = 109 E-value = 2.2e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCTGGTTC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :a:1:::a probability G :::9a::: matrix T a:a::aa: bits 2.3 * * 2.0 * * * 1.8 *** **** 1.6 ******** Relative 1.4 ******** Entropy 1.1 ******** (15.7 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TCTGGTTC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGGTTC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr14:72422576-72422596 6 1.32e-05 gttgc tctggttc aaattcc chr10:34064710-34064730 5 1.32e-05 tcgc tctggttc aaacacct chr1:230274778-230274798 7 1.32e-05 agtcac tctggttc aaacac chr1:225654707-225654727 2 1.32e-05 c tctggttc acacgcctct chr8:52362990-52363010 1 1.32e-05 . tctggttc aaatgccttt chr17:16825876-16825896 11 1.32e-05 atggagtcag tctggttc aa chr4:144284045-144284065 7 1.32e-05 agtcac tctggttc aaatgc chr16:10870966-10870986 2 1.32e-05 c tctggttc acacgcctct chr10:12307568-12307588 3 1.32e-05 gc tctggttc aaacgcctct chr7:93787375-93787395 7 2.54e-05 agtcac tctcgttc gaatgt -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGGTTC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr14:72422576-72422596 1.3e-05 5_[+4]_7 chr10:34064710-34064730 1.3e-05 4_[+4]_8 chr1:230274778-230274798 1.3e-05 6_[+4]_6 chr1:225654707-225654727 1.3e-05 1_[+4]_11 chr8:52362990-52363010 1.3e-05 [+4]_12 chr17:16825876-16825896 1.3e-05 10_[+4]_2 chr4:144284045-144284065 1.3e-05 6_[+4]_6 chr16:10870966-10870986 1.3e-05 1_[+4]_11 chr10:12307568-12307588 1.3e-05 2_[+4]_10 chr7:93787375-93787395 2.5e-05 6_[+4]_6 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGGTTC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCTGGTTC width=8 seqs=10 chr14:72422576-72422596 ( 6) TCTGGTTC 1 chr10:34064710-34064730 ( 5) TCTGGTTC 1 chr1:230274778-230274798 ( 7) TCTGGTTC 1 chr1:225654707-225654727 ( 2) TCTGGTTC 1 chr8:52362990-52363010 ( 1) TCTGGTTC 1 chr17:16825876-16825896 ( 11) TCTGGTTC 1 chr4:144284045-144284065 ( 7) TCTGGTTC 1 chr16:10870966-10870986 ( 2) TCTGGTTC 1 chr10:12307568-12307588 ( 3) TCTGGTTC 1 chr7:93787375-93787395 ( 7) TCTCGTTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGGTTC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.5921 E= 2.2e-008 -997 -997 -997 186 -997 225 -997 -997 -997 -997 -997 186 -997 -107 197 -997 -997 -997 212 -997 -997 -997 -997 186 -997 -997 -997 186 -997 225 -997 -997 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGGTTC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 2.2e-008 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.100000 0.900000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTGGTTC MEME-4 regular expression -------------------------------------------------------------------------------- TCTGGTTC -------------------------------------------------------------------------------- Time 4.76 secs. ******************************************************************************** ******************************************************************************** MOTIF ACCAGAGY MEME-5 width = 8 sites = 14 llr = 124 E-value = 1.8e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif ACCAGAGY MEME-5 Description -------------------------------------------------------------------------------- Simplified A 8::a1a1: pos.-specific C :9a:::15 probability G 21::9:8: matrix T :::::::5 bits 2.3 * 2.0 * 1.8 ***** 1.6 ***** Relative 1.4 ***** Entropy 1.1 ******** (12.8 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel ACCAGAGC consensus G T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACCAGAGY MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr16:74131878-74131898 4 1.14e-05 tga accagagc aactccatc chr9:139969559-139969579 12 1.14e-05 aggtgtgtga accagagc a chr5:133405419-133405439 4 1.14e-05 tga accagagc aactccatc chr8:42124074-42124094 1 1.14e-05 . accagagc aactccatct chr7:46562301-46562321 1 2.62e-05 . accagagt cactccatct chr5:5523353-5523373 13 2.62e-05 aggtgttaga accagagt chr21:45633770-45633790 6 2.62e-05 tttga accagagt gactcca chr10:75939068-75939088 1 3.53e-05 . gccagagc gactccatct chr16:23874077-23874097 4 4.72e-05 tga gccagagt gactccatc chr22:24085143-24085163 10 5.77e-05 CCAGAACAG ACCAGACC CAG chr7:89852943-89852963 5 1.20e-04 cttg accaaagc acagccat chr5:95064368-95064388 10 1.39e-04 ggggtctga accagaat gac chr8:29272636-29272656 1 1.55e-04 . agcagagt tgtcagaggt chr15:40342559-40342579 13 1.85e-04 GAGTAACAAG GCCAGACT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACCAGAGY MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:74131878-74131898 1.1e-05 3_[+5]_9 chr9:139969559-139969579 1.1e-05 11_[+5]_1 chr5:133405419-133405439 1.1e-05 3_[+5]_9 chr8:42124074-42124094 1.1e-05 [+5]_12 chr7:46562301-46562321 2.6e-05 [+5]_12 chr5:5523353-5523373 2.6e-05 12_[+5] chr21:45633770-45633790 2.6e-05 5_[+5]_7 chr10:75939068-75939088 3.5e-05 [+5]_12 chr16:23874077-23874097 4.7e-05 3_[+5]_9 chr22:24085143-24085163 5.8e-05 9_[+5]_3 chr7:89852943-89852963 0.00012 4_[+5]_8 chr5:95064368-95064388 0.00014 9_[+5]_3 chr8:29272636-29272656 0.00016 [+5]_12 chr15:40342559-40342579 0.00018 12_[+5] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACCAGAGY MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ACCAGAGY width=8 seqs=14 chr16:74131878-74131898 ( 4) ACCAGAGC 1 chr9:139969559-139969579 ( 12) ACCAGAGC 1 chr5:133405419-133405439 ( 4) ACCAGAGC 1 chr8:42124074-42124094 ( 1) ACCAGAGC 1 chr7:46562301-46562321 ( 1) ACCAGAGT 1 chr5:5523353-5523373 ( 13) ACCAGAGT 1 chr21:45633770-45633790 ( 6) ACCAGAGT 1 chr10:75939068-75939088 ( 1) GCCAGAGC 1 chr16:23874077-23874097 ( 4) GCCAGAGT 1 chr22:24085143-24085163 ( 10) ACCAGACC 1 chr7:89852943-89852963 ( 5) ACCAAAGC 1 chr5:95064368-95064388 ( 10) ACCAGAAT 1 chr8:29272636-29272656 ( 1) AGCAGAGT 1 chr15:40342559-40342579 ( 13) GCCAGACT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACCAGAGY MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.4605 E= 1.8e-003 146 -1045 -10 -1045 -1045 214 -168 -1045 -1045 225 -1045 -1045 181 -1045 -1045 -1045 -200 -1045 202 -1045 181 -1045 -1045 -1045 -200 -55 178 -1045 -1045 125 -1045 86 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACCAGAGY MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 1.8e-003 0.785714 0.000000 0.214286 0.000000 0.000000 0.928571 0.071429 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.071429 0.000000 0.928571 0.000000 1.000000 0.000000 0.000000 0.000000 0.071429 0.142857 0.785714 0.000000 0.000000 0.500000 0.000000 0.500000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACCAGAGY MEME-5 regular expression -------------------------------------------------------------------------------- [AG]CCAGAG[CT] -------------------------------------------------------------------------------- Time 5.49 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:110395379-110395399 3.11e-01 20 chrX:55893407-55893427 6.52e-01 20 chr5:157345471-157345491 2.84e-01 20 chr4:156630146-156630166 7.36e-01 20 chr8:42124074-42124094 5.21e-05 [+5(1.14e-05)]_3_[+2(1.51e-05)]_1 chr9:37404333-37404353 5.94e-01 20 chr8:29304497-29304517 5.46e-04 6_[+1(1.56e-05)]_6 chr9:80507986-80508006 8.47e-03 5_[+3(8.33e-05)]_7 chr5:76028405-76028425 6.82e-02 20 chr15:96601504-96601524 6.73e-02 20 chr11:85968699-85968719 4.92e-02 20 chr13:109335315-10933533 7.19e-02 20 chr6:157955339-157955359 3.66e-03 8_[+1(3.60e-05)]_4 chr12:27374093-27374113 1.89e-01 20 chrX:108430347-108430367 8.87e-01 20 chr5:1132058-1132078 2.00e-03 [+2(1.51e-05)]_12 chr1:200855919-200855939 3.67e-02 20 chr2:120096574-120096594 8.82e-01 20 chr8:102921117-102921137 5.41e-03 9_[+1(1.56e-05)]_3 chr18:3154398-3154418 5.85e-02 20 chr9:99183130-99183150 6.79e-03 [+3(1.56e-05)]_12 chr14:72477395-72477415 1.68e-02 20 chr17:75185519-75185539 9.11e-03 [+2(3.50e-05)]_12 chr14:93361882-93361902 4.31e-03 3_[+3(2.81e-05)]_9 chr1:1358127-1358147 1.64e-01 20 chr3:119261482-119261502 3.31e-03 11_[+2(1.51e-05)]_1 chr12:110488129-11048814 6.91e-01 20 chr5:133405419-133405439 1.17e-02 3_[+5(1.14e-05)]_9 chr4:40580109-40580129 4.55e-01 20 chr6:27028080-27028100 4.65e-02 20 chrX:19780195-19780215 5.17e-01 20 chr8:90809088-90809108 6.17e-03 9_[+3(1.56e-05)]_3 chr19:35838366-35838386 5.05e-01 20 chr10:75503301-75503321 9.50e-01 20 chr4:22600272-22600292 1.18e-01 20 chr1:171585938-171585958 8.74e-01 20 chr22:37373697-37373717 3.37e-01 20 chr2:172179589-172179609 3.28e-01 20 chr17:75105616-75105636 3.65e-01 20 chr12:31985825-31985845 4.09e-01 20 chr12:39271587-39271607 2.01e-01 20 chr1:185310668-185310688 9.09e-01 20 chr2:208199673-208199693 7.88e-03 20 chr7:105824615-105824635 4.68e-02 8_[+2(3.50e-05)]_4 chr18:39809351-39809371 3.31e-02 20 chr6:15905115-15905135 2.93e-02 4_[+1(3.60e-05)]_8 chr13:100026593-10002661 2.17e-01 20 chr10:12307568-12307588 1.84e-02 2_[+4(1.32e-05)]_10 chr7:120034814-120034834 1.09e-01 20 chr16:23874077-23874097 4.29e-03 3_[+5(4.72e-05)]_9 chr17:53510222-53510242 8.17e-01 20 chr1:169130828-169130848 1.16e-01 20 chr22:39507374-39507394 1.75e-03 10_[+2(3.50e-05)]_2 chr8:145116045-145116065 1.16e-01 20 chr10:18709053-18709073 4.86e-01 20 chr2:113541060-113541080 1.58e-01 20 chr15:34628820-34628840 1.03e-01 20 chr5:158381914-158381934 8.31e-01 20 chr22:42839922-42839942 1.02e-01 20 chr6:15896465-15896485 1.58e-02 7_[+1(1.56e-05)]_5 chr16:10870966-10870986 2.50e-02 1_[+4(1.32e-05)]_11 chr8:27234001-27234021 5.04e-01 20 chr21:45633770-45633790 2.67e-02 5_[+5(2.62e-05)]_7 chr20:30484088-30484108 1.02e-02 20 chr6:26550540-26550560 3.19e-01 20 chr2:160749558-160749578 4.59e-01 20 chr1:67637420-67637440 4.75e-01 20 chr16:22366910-22366930 1.46e-03 8_[+1(1.56e-05)]_4 chr12:124616016-12461603 1.91e-02 4_[+2(6.31e-05)]_8 chr21:30604626-30604646 2.58e-01 20 chr5:10634883-10634903 6.78e-03 20 chr5:124246245-124246265 1.70e-01 20 chr8:101514083-101514103 4.76e-01 20 chr17:12342222-12342242 3.92e-03 9_[+1(1.56e-05)]_3 chrX:11812011-11812031 1.64e-02 20 chr5:169237759-169237779 1.72e-02 10_[+2(1.51e-05)]_2 chr6:14077550-14077570 2.86e-03 12_[+3(1.56e-05)] chr4:144284045-144284065 1.06e-02 6_[+4(1.32e-05)]_6 chr1:101917521-101917541 8.03e-01 20 chr17:16825876-16825896 1.64e-05 [+1(1.56e-05)]_2_[+4(1.32e-05)]_2 chr9:139969559-139969579 5.84e-03 11_[+5(1.14e-05)]_1 chr13:68604718-68604738 7.60e-02 20 chr3:58022570-58022590 1.29e-02 9_[+1(1.56e-05)]_3 chr13:33767638-33767658 6.81e-01 20 chr19:48753750-48753770 8.36e-01 20 chr3:183239061-183239081 5.10e-02 5_[+1(3.60e-05)]_7 chr22:31136557-31136577 5.45e-01 20 chr7:105980655-105980675 8.31e-01 20 chr10:82864532-82864552 4.64e-01 20 chr1:222135914-222135934 1.86e-01 20 chr3:69377558-69377578 5.37e-02 20 chr3:15423214-15423234 5.01e-02 4_[+1(3.60e-05)]_8 chr12:29843840-29843860 3.11e-01 20 chr6:11496207-11496227 3.98e-01 20 chr4:71781759-71781779 2.59e-01 20 chr1:247531191-247531211 2.96e-01 20 chr14:103894365-10389438 3.74e-01 20 chr6:15693052-15693072 2.89e-01 20 chr7:121030344-121030364 3.97e-01 20 chr8:52362990-52363010 6.48e-03 [+4(1.32e-05)]_12 chr8:29272636-29272656 6.15e-04 8_[+3(1.56e-05)]_4 chr6:41311553-41311573 3.99e-01 20 chr12:39286962-39286982 4.96e-03 5_[+3(1.56e-05)]_7 chr2:189099610-189099630 1.30e-02 5_[+2(1.51e-05)]_7 chr15:42896332-42896352 4.44e-02 9_[+1(3.60e-05)]_3 chr8:128318685-128318705 9.49e-01 20 chr1:160621984-160622004 1.71e-02 11_[+2(3.50e-05)]_1 chr2:152237314-152237334 2.55e-01 20 chr22:24085143-24085163 8.22e-02 9_[+5(5.77e-05)]_3 chr11:72863729-72863749 5.30e-01 20 chr11:63302445-63302465 3.44e-01 20 chr5:35317113-35317133 9.13e-01 20 chr8:50023254-50023274 4.40e-01 20 chr9:38091712-38091732 4.85e-04 8_[+3(2.81e-05)]_4 chr5:178506285-178506305 5.56e-01 20 chr8:11391702-11391722 7.41e-01 20 chr19:6576888-6576908 1.55e-01 20 chr1:225654707-225654727 2.50e-02 1_[+4(1.32e-05)]_11 chrX:148206436-148206456 3.58e-02 20 chr1:8998676-8998696 8.55e-01 20 chr8:101510649-101510669 2.74e-01 20 chr19:36674099-36674119 9.13e-01 20 chr3:45106755-45106775 1.78e-01 20 chr3:141031537-141031557 3.18e-02 7_[+1(3.60e-05)]_5 chr2:179962998-179963018 5.93e-01 20 chr1:180880862-180880882 6.87e-01 20 chr19:6579536-6579556 1.53e-01 20 chr2:201991210-201991230 3.46e-01 20 chr13:23449139-23449159 8.49e-03 1_[+1(1.56e-05)]_11 chr4:48237276-48237296 8.63e-01 20 chr19:48757990-48758010 5.16e-01 20 chr13:25199593-25199613 2.27e-03 7_[+1(3.60e-05)]_5 chr19:36672571-36672591 2.73e-01 20 chr2:160747941-160747961 1.13e-01 20 chr19:43001114-43001134 8.08e-01 20 chr3:98464739-98464759 1.49e-01 20 chr7:89852943-89852963 3.90e-02 20 chr4:106087416-106087436 5.59e-02 20 chr22:24086904-24086924 6.25e-01 20 chr5:95146742-95146762 1.49e-01 20 chr7:93787375-93787395 6.67e-03 6_[+4(2.54e-05)]_6 chr4:143314463-143314483 1.46e-03 8_[+1(1.56e-05)]_4 chr4:162264908-162264928 1.56e-02 12_[+2(3.50e-05)] chr1:90709110-90709130 8.33e-01 20 chr15:40342559-40342579 2.48e-02 20 chr19:36673071-36673091 3.84e-01 20 chr20:6833310-6833330 4.77e-01 20 chr11:102452987-10245300 4.82e-02 20 chr7:154656310-154656330 6.53e-01 20 chr11:109854289-10985430 4.65e-01 20 chr2:8588103-8588123 7.47e-03 10_[+3(4.76e-05)]_2 chr3:183229648-183229668 6.15e-02 [+1(3.60e-05)]_12 chr2:123394460-123394480 4.89e-01 20 chr6:26241317-26241337 8.98e-01 20 chr5:5523353-5523373 2.03e-03 12_[+5(2.62e-05)] chr1:230274778-230274798 1.11e-02 6_[+4(1.32e-05)]_6 chr5:132002601-132002621 8.04e-01 20 chr1:22118714-22118734 2.67e-03 1_[+1(1.56e-05)]_11 chr2:208197726-208197746 5.31e-01 20 chr2:198124392-198124412 9.28e-02 20 chr9:85341974-85341994 3.89e-01 20 chr9:123981133-123981153 6.38e-04 [+2(3.50e-05)]_12 chr6:86082470-86082490 2.27e-02 9_[+1(1.56e-05)]_3 chr1:53101530-53101550 5.97e-01 20 chr6:137692585-137692605 6.75e-01 20 chrX:15901615-15901635 9.60e-01 20 chr13:52732977-52732997 1.42e-03 9_[+2(1.51e-05)]_3 chr5:149182936-149182956 3.95e-02 20 chr18:13576830-13576850 4.57e-03 20 chr4:127093422-127093442 2.88e-02 7_[+2(5.15e-05)]_5 chr6:29529754-29529774 8.38e-03 6_[+3(1.56e-05)]_6 chr13:43615601-43615621 6.34e-01 20 chr1:160522352-160522372 7.07e-01 20 chr6:82241751-82241771 5.05e-01 20 chr20:36170920-36170940 2.49e-02 11_[+1(6.45e-05)]_1 chr7:64682239-64682259 5.63e-01 20 chr3:150317824-150317844 4.65e-01 20 chr1:191665252-191665272 1.62e-03 12_[+2(1.51e-05)] chr12:11774879-11774899 2.07e-02 6_[+3(4.76e-05)]_6 chr8:30823944-30823964 5.65e-01 20 chr19:36673640-36673660 4.35e-01 20 chr5:78059652-78059672 7.66e-01 20 chr7:46562301-46562321 6.00e-05 [+5(2.62e-05)]_3_[+2(1.51e-05)]_1 chr8:41676549-41676569 1.42e-01 20 chr2:17982590-17982610 2.21e-01 20 chr1:212651648-212651668 2.62e-01 20 chr22:24085686-24085706 7.70e-01 20 chr7:156716283-156716303 1.49e-02 11_[+1(1.56e-05)]_1 chr10:75939068-75939088 8.67e-05 [+5(3.53e-05)]_3_[+2(1.51e-05)]_1 chr1:160523694-160523714 2.46e-01 20 chr14:71757852-71757872 7.50e-01 20 chr5:95064368-95064388 1.63e-02 20 chr2:197317702-197317722 1.40e-02 20 chr9:134594717-134594737 7.47e-01 20 chr6:2859522-2859542 2.47e-01 20 chr8:42213142-42213162 3.84e-01 20 chr1:55428875-55428895 6.17e-01 20 chr1:46409012-46409032 6.68e-01 20 chr20:49125541-49125561 1.68e-01 20 chr2:231519593-231519613 1.70e-02 10_[+2(1.51e-05)]_2 chr19:7598918-7598938 1.06e-01 20 chr1:155277167-155277187 1.51e-01 20 chr5:142588905-142588925 3.08e-02 6_[+3(6.38e-05)]_6 chrX:153267878-153267898 1.79e-01 20 chr12:25103336-25103356 3.92e-02 20 chr10:34064710-34064730 1.13e-02 4_[+4(1.32e-05)]_8 chr6:130945320-130945340 6.55e-03 20 chr22:24086267-24086287 4.55e-01 20 chr12:106160023-10616004 5.67e-01 20 chr3:101362831-101362851 1.84e-03 2_[+3(1.56e-05)]_10 chr2:95743163-95743183 3.43e-01 20 chr15:35286219-35286239 3.08e-02 9_[+1(1.56e-05)]_3 chr1:25354885-25354905 6.12e-01 20 chr3:127451826-127451846 1.42e-03 1_[+2(1.51e-05)]_11 chr4:3048520-3048540 8.01e-01 20 chr14:97852248-97852268 6.96e-02 5_[+1(5.30e-05)]_7 chr6:110908700-110908720 1.00e-02 [+1(1.56e-05)]_12 chrX:6229742-6229762 4.55e-01 20 chr2:86117770-86117790 2.90e-01 20 chr11:62380059-62380079 9.49e-02 20 chr14:53168237-53168257 1.54e-01 20 chr11:107550531-10755055 7.25e-01 20 chr16:74131878-74131898 1.17e-02 3_[+5(1.14e-05)]_9 chrX:2243310-2243330 2.12e-02 3_[+2(1.51e-05)]_9 chr14:103234707-10323472 2.29e-01 20 chrX:39733634-39733654 5.83e-01 20 chr7:92778280-92778300 1.12e-02 3_[+3(1.56e-05)]_9 chr6:13434409-13434429 2.14e-01 20 chr15:86033122-86033142 4.91e-01 20 chr11:88616205-88616225 4.27e-01 20 chr5:178507883-178507903 9.95e-02 20 chr22:39504720-39504740 1.60e-01 20 chr2:191535444-191535464 4.37e-01 20 chr2:203007451-203007471 2.83e-02 3_[+1(3.60e-05)]_9 chr5:146719802-146719822 6.93e-01 20 chr1:98953373-98953393 7.27e-02 20 chr12:11990672-11990692 3.69e-02 20 chr14:106627062-10662708 5.37e-01 20 chr22:42332709-42332729 1.32e-01 20 chr11:88037748-88037768 5.53e-01 20 chr15:22436248-22436268 7.79e-01 20 chr1:46785952-46785972 6.15e-01 20 chr5:142598531-142598551 1.05e-01 20 chr9:5566512-5566532 2.78e-02 20 chr10:30714460-30714480 6.17e-01 20 chr1:86965858-86965878 2.32e-01 20 chr17:73319958-73319978 7.89e-01 20 chr12:123236290-12323631 7.70e-01 20 chr14:72422576-72422596 1.23e-02 5_[+4(1.32e-05)]_7 chr1:182730608-182730628 4.00e-01 20 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n05.farnam.hpc.yale.internal ********************************************************************************