******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/ZNF384.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr8:76314444-76314464 1.0000 20 chr5:123006887-123006907 1.0000 20 chr15:66579937-66579957 1.0000 20 chr17:20020131-20020151 1.0000 20 chrX:48489964-48489984 1.0000 20 chr2:86595617-86595637 1.0000 20 chr7:27960951-27960971 1.0000 20 chr13:20771656-20771676 1.0000 20 chr6:87776340-87776360 1.0000 20 chr1:174713270-174713290 1.0000 20 chr2:4007079-4007099 1.0000 20 chr5:158526877-158526897 1.0000 20 chr11:118754464-11875448 1.0000 20 chr10:22242712-22242732 1.0000 20 chrX:130875166-130875186 1.0000 20 chr10:123494220-12349424 1.0000 20 chr19:15202856-15202876 1.0000 20 chr22:20772592-20772612 1.0000 20 chr4:75055161-75055181 1.0000 20 chr15:72036490-72036510 1.0000 20 chrX:115066596-115066616 1.0000 20 chr6:21648923-21648943 1.0000 20 chr16:46822053-46822073 1.0000 20 chr7:28429211-28429231 1.0000 20 chr9:94489710-94489730 1.0000 20 chr2:10188994-10189014 1.0000 20 chr11:31418999-31419019 1.0000 20 chr2:136873819-136873839 1.0000 20 chr7:18395946-18395966 1.0000 20 chr6:16317095-16317115 1.0000 20 chr14:37023032-37023052 1.0000 20 chr8:72740304-72740324 1.0000 20 chr14:81940585-81940605 1.0000 20 chr6:43037882-43037902 1.0000 20 chr12:67749797-67749817 1.0000 20 chrX:56829413-56829433 1.0000 20 chr6:39949011-39949031 1.0000 20 chr6:129929247-129929267 1.0000 20 chr8:56941561-56941581 1.0000 20 chr11:124285434-12428545 1.0000 20 chr5:118668798-118668818 1.0000 20 chr2:166984562-166984582 1.0000 20 chr14:68938413-68938433 1.0000 20 chr3:169553992-169554012 1.0000 20 chr6:41516525-41516545 1.0000 20 chr8:65664728-65664748 1.0000 20 chr12:42678123-42678143 1.0000 20 chrX:122547392-122547412 1.0000 20 chr2:11969563-11969583 1.0000 20 chr2:216134748-216134768 1.0000 20 chr4:130284036-130284056 1.0000 20 chr9:75815809-75815829 1.0000 20 chr3:50384808-50384828 1.0000 20 chrX:115074685-115074705 1.0000 20 chr1:160960223-160960243 1.0000 20 chr15:40509593-40509613 1.0000 20 chr12:113634947-11363496 1.0000 20 chr11:14476753-14476773 1.0000 20 chr18:3995686-3995706 1.0000 20 chr8:17434548-17434568 1.0000 20 chr5:96088320-96088340 1.0000 20 chr11:7716081-7716101 1.0000 20 chr5:38994576-38994596 1.0000 20 chr12:57151451-57151471 1.0000 20 chr6:114176155-114176175 1.0000 20 chr7:6037013-6037033 1.0000 20 chr12:97380913-97380933 1.0000 20 chr3:107379387-107379407 1.0000 20 chr17:46429384-46429404 1.0000 20 chr10:131908131-13190815 1.0000 20 chr12:112383205-11238322 1.0000 20 chr20:17485628-17485648 1.0000 20 chr14:79400499-79400519 1.0000 20 chr1:234624530-234624550 1.0000 20 chrX:123094514-123094534 1.0000 20 chr14:98087070-98087090 1.0000 20 chr8:8350905-8350925 1.0000 20 chr4:148758791-148758811 1.0000 20 chr19:17010702-17010722 1.0000 20 chr3:105405325-105405345 1.0000 20 chr19:34827908-34827928 1.0000 20 chr11:133280485-13328050 1.0000 20 chr20:5816738-5816758 1.0000 20 chr8:11108652-11108672 1.0000 20 chr20:36621512-36621532 1.0000 20 chr11:124633253-12463327 1.0000 20 chr19:47343931-47343951 1.0000 20 chr7:70294327-70294347 1.0000 20 chr20:3096354-3096374 1.0000 20 chr13:96313444-96313464 1.0000 20 chr4:13658276-13658296 1.0000 20 chr8:124706219-124706239 1.0000 20 chr1:186692079-186692099 1.0000 20 chr12:95968138-95968158 1.0000 20 chr1:220164570-220164590 1.0000 20 chr5:138161130-138161150 1.0000 20 chr13:73383243-73383263 1.0000 20 chr2:43804617-43804637 1.0000 20 chr15:84662510-84662530 1.0000 20 chr8:21771312-21771332 1.0000 20 chr5:146833579-146833599 1.0000 20 chrX:115057303-115057323 1.0000 20 chrX:130845207-130845227 1.0000 20 chr15:59983600-59983620 1.0000 20 chr7:35464666-35464686 1.0000 20 chr20:58524318-58524338 1.0000 20 chr4:186017375-186017395 1.0000 20 chr10:7453067-7453087 1.0000 20 chr11:111802705-11180272 1.0000 20 chr6:97074801-97074821 1.0000 20 chr11:47475938-47475958 1.0000 20 chrX:130868881-130868901 1.0000 20 chr2:180990406-180990426 1.0000 20 chr10:85786700-85786720 1.0000 20 chrX:130912714-130912734 1.0000 20 chr6:53516202-53516222 1.0000 20 chr1:51954140-51954160 1.0000 20 chr10:81227324-81227344 1.0000 20 chr4:77679636-77679656 1.0000 20 chr12:923535-923555 1.0000 20 chr17:7816451-7816471 1.0000 20 chr16:4598916-4598936 1.0000 20 chr12:8089053-8089073 1.0000 20 chr5:55232125-55232145 1.0000 20 chr7:149232522-149232542 1.0000 20 chr19:2264562-2264582 1.0000 20 chr10:7914139-7914159 1.0000 20 chr12:108070204-10807022 1.0000 20 chr1:9352927-9352947 1.0000 20 chr5:150508506-150508526 1.0000 20 chr10:63843027-63843047 1.0000 20 chr3:127415195-127415215 1.0000 20 chr15:57515798-57515818 1.0000 20 chr3:32440720-32440740 1.0000 20 chr8:127836823-127836843 1.0000 20 chr12:122028769-12202878 1.0000 20 chr4:175286354-175286374 1.0000 20 chr7:140712006-140712026 1.0000 20 chr6:152589551-152589571 1.0000 20 chr19:13305497-13305517 1.0000 20 chr6:31797894-31797914 1.0000 20 chr14:24801442-24801462 1.0000 20 chr6:110116304-110116324 1.0000 20 chr13:49154504-49154524 1.0000 20 chr12:49147420-49147440 1.0000 20 chr21:26412226-26412246 1.0000 20 chr15:55401202-55401222 1.0000 20 chr1:102033317-102033337 1.0000 20 chr12:116504605-11650462 1.0000 20 chr6:20528748-20528768 1.0000 20 chr1:21444237-21444257 1.0000 20 chr1:46872185-46872205 1.0000 20 chr2:233470685-233470705 1.0000 20 chr9:22239127-22239147 1.0000 20 chr12:106780168-10678018 1.0000 20 chr17:884394-884414 1.0000 20 chr5:35003673-35003693 1.0000 20 chr19:10111079-10111099 1.0000 20 chrX:24072329-24072349 1.0000 20 chr12:4381198-4381218 1.0000 20 chr11:35843514-35843534 1.0000 20 chrX:130863569-130863589 1.0000 20 chr3:18430754-18430774 1.0000 20 chr6:144665170-144665190 1.0000 20 chr14:52347685-52347705 1.0000 20 chr16:69158053-69158073 1.0000 20 chr1:172711974-172711994 1.0000 20 chr7:66949403-66949423 1.0000 20 chr11:86002996-86003016 1.0000 20 chr1:226369920-226369940 1.0000 20 chr1:20539509-20539529 1.0000 20 chr8:28727820-28727840 1.0000 20 chr11:30367812-30367832 1.0000 20 chr6:33292200-33292220 1.0000 20 chr4:77669974-77669994 1.0000 20 chr4:96077478-96077498 1.0000 20 chr5:151894598-151894618 1.0000 20 chrX:130886577-130886597 1.0000 20 chr3:149687872-149687892 1.0000 20 chr4:87994431-87994451 1.0000 20 chr2:64789469-64789489 1.0000 20 chr2:64367996-64368016 1.0000 20 chr17:42295960-42295980 1.0000 20 chr1:51972421-51972441 1.0000 20 chr4:46978375-46978395 1.0000 20 chr1:226862836-226862856 1.0000 20 chr11:102193513-10219353 1.0000 20 chr11:45315329-45315349 1.0000 20 chr1:8532883-8532903 1.0000 20 chrX:19905749-19905769 1.0000 20 chr2:166060611-166060631 1.0000 20 chr12:54585460-54585480 1.0000 20 chr4:129207742-129207762 1.0000 20 chr12:5158499-5158519 1.0000 20 chr4:74519525-74519545 1.0000 20 chr7:8218212-8218232 1.0000 20 chrX:130902405-130902425 1.0000 20 chr6:160141828-160141848 1.0000 20 chr13:39396449-39396469 1.0000 20 chr2:30937174-30937194 1.0000 20 chr3:151987644-151987664 1.0000 20 chr19:50094337-50094357 1.0000 20 chr22:25477549-25477569 1.0000 20 chr11:122754295-12275431 1.0000 20 chr13:25302303-25302323 1.0000 20 chr2:190935212-190935232 1.0000 20 chr4:106635608-106635628 1.0000 20 chr8:37248153-37248173 1.0000 20 chr3:183613204-183613224 1.0000 20 chr6:22194607-22194627 1.0000 20 chrX:130936983-130937003 1.0000 20 chr17:70000999-70001019 1.0000 20 chrX:69658968-69658988 1.0000 20 chrX:130887397-130887417 1.0000 20 chr12:50147723-50147743 1.0000 20 chr4:186319945-186319965 1.0000 20 chr13:51467834-51467854 1.0000 20 chr3:148673431-148673451 1.0000 20 chr13:91708790-91708810 1.0000 20 chr1:53152068-53152088 1.0000 20 chr1:211649728-211649748 1.0000 20 chrX:130896884-130896904 1.0000 20 chr1:150505213-150505233 1.0000 20 chrX:19352496-19352516 1.0000 20 chr8:1729577-1729597 1.0000 20 chrX:56790289-56790309 1.0000 20 chr12:27020101-27020121 1.0000 20 chr10:112625643-11262566 1.0000 20 chr12:92861020-92861040 1.0000 20 chr21:28221954-28221974 1.0000 20 chr8:117460311-117460331 1.0000 20 chr8:22841003-22841023 1.0000 20 chr20:30048469-30048489 1.0000 20 chr12:15148933-15148953 1.0000 20 chr21:30848981-30849001 1.0000 20 chr12:109255827-10925584 1.0000 20 chr5:88042260-88042280 1.0000 20 chr18:70320449-70320469 1.0000 20 chr11:14353266-14353286 1.0000 20 chr6:141884136-141884156 1.0000 20 chr14:66826369-66826389 1.0000 20 chrX:25739904-25739924 1.0000 20 chr1:171455235-171455255 1.0000 20 chr6:88541881-88541901 1.0000 20 chr6:3126774-3126794 1.0000 20 chr5:55289871-55289891 1.0000 20 chr17:2185689-2185709 1.0000 20 chr8:66946013-66946033 1.0000 20 chr15:40388352-40388372 1.0000 20 chr1:151128635-151128655 1.0000 20 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/GM12878/inference_raw/MEME/RankLinear0.6_10_ZNF384/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/ZNF384.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 5000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 5000 norand= no csites= 1000 Letter frequencies in dataset: A 0.315 C 0.193 G 0.193 T 0.298 Background letter frequencies (from file dataset with add-one prior applied): A 0.315 C 0.193 G 0.193 T 0.298 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TTTTTTTT MEME-1 width = 8 sites = 40 llr = 383 E-value = 2.3e-058 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :::::::: probability G :::::::: matrix T aaaaaaaa bits 2.4 2.1 1.9 1.7 ******** Relative 1.4 ******** Entropy 1.2 ******** (13.8 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTTTTTTT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr15:40388352-40388372 3 6.22e-05 CC tttttttt tttttttttt chr8:66946013-66946033 5 6.22e-05 tttt tttttttt tttGGTAG chr6:88541881-88541901 11 6.22e-05 CGTAGtttta tttttttt aa chr1:171455235-171455255 13 6.22e-05 CGTGAAGTCt tttttttt chr14:66826369-66826389 5 6.22e-05 AGCT TTTTTTTT TTTTTTTT chr5:88042260-88042280 6 6.22e-05 TTTTT TTTTTTTT AACAAAG chr12:27020101-27020121 5 6.22e-05 TACC TTTTTTTT TTTTTTTG chr17:70000999-70001019 9 6.22e-05 tttttttc tttttttt tttt chr4:106635608-106635628 13 6.22e-05 AGAGGAAGGA TTTTTTTT chr11:122754295-12275431 1 6.22e-05 . TTTTTTTT TTCACTGGAC chr19:50094337-50094357 12 6.22e-05 TCACTCTCCC TTTTTTTT T chr2:30937174-30937194 12 6.22e-05 CAGAtttttt tttttttt t chr7:8218212-8218232 1 6.22e-05 . tttttttt aaaaaaGAAG chr12:54585460-54585480 5 6.22e-05 GTTT TTTTTTTT TTTTTTTT chr2:64789469-64789489 5 6.22e-05 TGCT TTTTTTTT TTTTTTTA chr4:77669974-77669994 6 6.22e-05 ttttt tttttttt tttAAAT chr3:18430754-18430774 6 6.22e-05 TTTTT TTTTTTTT TTTTTGG chr5:35003673-35003693 12 6.22e-05 GTCTCCGCCT TTTTTTTT T chr9:22239127-22239147 6 6.22e-05 ttttt tttttttt ttttttt chr6:110116304-110116324 5 6.22e-05 tttt tttttttt tttttttt chr14:24801442-24801462 2 6.22e-05 C TTTTTTTT TTTTTTTTTC chr10:85786700-85786720 5 6.22e-05 TTTt tttttttt tctgccag chr8:21771312-21771332 4 6.22e-05 ttt tttttttt ttctGAGTG chr1:186692079-186692099 3 6.22e-05 CT TTTTTTTT TTTTCTGAGA chr8:124706219-124706239 13 6.22e-05 TGGTTTTGCC TTTTTTTT chr20:36621512-36621532 4 6.22e-05 GCT TTTTTTTT TTTTTTTTG chr20:5816738-5816758 5 6.22e-05 TTGT TTTTTTTT TTTAAGCT chr11:133280485-13328050 3 6.22e-05 CT TTTTTTTT TCTTTGAGTG chr19:17010702-17010722 12 6.22e-05 CTGGGATTTT TTTTTTTT T chr4:148758791-148758811 4 6.22e-05 ctg tttttttt ttttttttt chr1:234624530-234624550 10 6.22e-05 TTTCCTTTT TTTTTTTT TGC chr5:118668798-118668818 6 6.22e-05 TTTTT TTTTTTTT CTAAGTA chr6:129929247-129929267 3 6.22e-05 CA TTTTTTTT CTTGCTGAGA chr6:16317095-16317115 3 6.22e-05 Ct tttttttt tttttttttt chr6:21648923-21648943 5 6.22e-05 TGCt tttttttt tttttttt chr15:72036490-72036510 6 6.22e-05 ttttt tttttttt ttttttt chr7:27960951-27960971 5 6.22e-05 ATCT TTTTTTTT TTTTTTCC chr17:20020131-20020151 6 6.22e-05 ttttt tttttttt ttggctg chr5:123006887-123006907 10 6.22e-05 TTCAAtttt tttttttt ttt chr15:84662510-84662530 6 1.02e-04 AAAGT TTTTTTCT GTCCATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr15:40388352-40388372 6.2e-05 2_[+1]_10 chr8:66946013-66946033 6.2e-05 4_[+1]_8 chr6:88541881-88541901 6.2e-05 10_[+1]_2 chr1:171455235-171455255 6.2e-05 12_[+1] chr14:66826369-66826389 6.2e-05 4_[+1]_8 chr5:88042260-88042280 6.2e-05 5_[+1]_7 chr12:27020101-27020121 6.2e-05 4_[+1]_8 chr17:70000999-70001019 6.2e-05 8_[+1]_4 chr4:106635608-106635628 6.2e-05 12_[+1] chr11:122754295-12275431 6.2e-05 [+1]_12 chr19:50094337-50094357 6.2e-05 11_[+1]_1 chr2:30937174-30937194 6.2e-05 11_[+1]_1 chr7:8218212-8218232 6.2e-05 [+1]_12 chr12:54585460-54585480 6.2e-05 4_[+1]_8 chr2:64789469-64789489 6.2e-05 4_[+1]_8 chr4:77669974-77669994 6.2e-05 5_[+1]_7 chr3:18430754-18430774 6.2e-05 5_[+1]_7 chr5:35003673-35003693 6.2e-05 11_[+1]_1 chr9:22239127-22239147 6.2e-05 5_[+1]_7 chr6:110116304-110116324 6.2e-05 4_[+1]_8 chr14:24801442-24801462 6.2e-05 1_[+1]_11 chr10:85786700-85786720 6.2e-05 4_[+1]_8 chr8:21771312-21771332 6.2e-05 3_[+1]_9 chr1:186692079-186692099 6.2e-05 2_[+1]_10 chr8:124706219-124706239 6.2e-05 12_[+1] chr20:36621512-36621532 6.2e-05 3_[+1]_9 chr20:5816738-5816758 6.2e-05 4_[+1]_8 chr11:133280485-13328050 6.2e-05 2_[+1]_10 chr19:17010702-17010722 6.2e-05 11_[+1]_1 chr4:148758791-148758811 6.2e-05 3_[+1]_9 chr1:234624530-234624550 6.2e-05 9_[+1]_3 chr5:118668798-118668818 6.2e-05 5_[+1]_7 chr6:129929247-129929267 6.2e-05 2_[+1]_10 chr6:16317095-16317115 6.2e-05 2_[+1]_10 chr6:21648923-21648943 6.2e-05 4_[+1]_8 chr15:72036490-72036510 6.2e-05 5_[+1]_7 chr7:27960951-27960971 6.2e-05 4_[+1]_8 chr17:20020131-20020151 6.2e-05 5_[+1]_7 chr5:123006887-123006907 6.2e-05 9_[+1]_3 chr15:84662510-84662530 0.0001 5_[+1]_7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTTTTTT width=8 seqs=40 chr15:40388352-40388372 ( 3) TTTTTTTT 1 chr8:66946013-66946033 ( 5) TTTTTTTT 1 chr6:88541881-88541901 ( 11) TTTTTTTT 1 chr1:171455235-171455255 ( 13) TTTTTTTT 1 chr14:66826369-66826389 ( 5) TTTTTTTT 1 chr5:88042260-88042280 ( 6) TTTTTTTT 1 chr12:27020101-27020121 ( 5) TTTTTTTT 1 chr17:70000999-70001019 ( 9) TTTTTTTT 1 chr4:106635608-106635628 ( 13) TTTTTTTT 1 chr11:122754295-12275431 ( 1) TTTTTTTT 1 chr19:50094337-50094357 ( 12) TTTTTTTT 1 chr2:30937174-30937194 ( 12) TTTTTTTT 1 chr7:8218212-8218232 ( 1) TTTTTTTT 1 chr12:54585460-54585480 ( 5) TTTTTTTT 1 chr2:64789469-64789489 ( 5) TTTTTTTT 1 chr4:77669974-77669994 ( 6) TTTTTTTT 1 chr3:18430754-18430774 ( 6) TTTTTTTT 1 chr5:35003673-35003693 ( 12) TTTTTTTT 1 chr9:22239127-22239147 ( 6) TTTTTTTT 1 chr6:110116304-110116324 ( 5) TTTTTTTT 1 chr14:24801442-24801462 ( 2) TTTTTTTT 1 chr10:85786700-85786720 ( 5) TTTTTTTT 1 chr8:21771312-21771332 ( 4) TTTTTTTT 1 chr1:186692079-186692099 ( 3) TTTTTTTT 1 chr8:124706219-124706239 ( 13) TTTTTTTT 1 chr20:36621512-36621532 ( 4) TTTTTTTT 1 chr20:5816738-5816758 ( 5) TTTTTTTT 1 chr11:133280485-13328050 ( 3) TTTTTTTT 1 chr19:17010702-17010722 ( 12) TTTTTTTT 1 chr4:148758791-148758811 ( 4) TTTTTTTT 1 chr1:234624530-234624550 ( 10) TTTTTTTT 1 chr5:118668798-118668818 ( 6) TTTTTTTT 1 chr6:129929247-129929267 ( 3) TTTTTTTT 1 chr6:16317095-16317115 ( 3) TTTTTTTT 1 chr6:21648923-21648943 ( 5) TTTTTTTT 1 chr15:72036490-72036510 ( 6) TTTTTTTT 1 chr7:27960951-27960971 ( 5) TTTTTTTT 1 chr17:20020131-20020151 ( 6) TTTTTTTT 1 chr5:123006887-123006907 ( 10) TTTTTTTT 1 chr15:84662510-84662530 ( 6) TTTTTTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 7.27845 E= 2.3e-058 -1197 -1197 -1197 175 -1197 -1197 -1197 175 -1197 -1197 -1197 175 -1197 -1197 -1197 175 -1197 -1197 -1197 175 -1197 -1197 -1197 175 -1197 -295 -1197 171 -1197 -1197 -1197 175 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 40 E= 2.3e-058 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.025000 0.000000 0.975000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-1 regular expression -------------------------------------------------------------------------------- TTTTTTTT -------------------------------------------------------------------------------- Time 1.93 secs. ******************************************************************************** ******************************************************************************** MOTIF AAAAAAAA MEME-2 width = 8 sites = 45 llr = 403 E-value = 3.1e-058 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-2 Description -------------------------------------------------------------------------------- Simplified A aaaaaaaa pos.-specific C :::::::: probability G :::::::: matrix T :::::::: bits 2.4 2.1 1.9 1.7 *** * * Relative 1.4 ******** Entropy 1.2 ******** (12.9 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AAAAAAAA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr17:2185689-2185709 6 9.69e-05 aaaaa aaaaaaaa aaaaaaa chr5:55289871-55289891 12 9.69e-05 AGGCaaaaaa aaaaaaaa a chrX:25739904-25739924 6 9.69e-05 AAAAA AAAAAAAA AAAACAA chr8:22841003-22841023 5 9.69e-05 aaaa aaaaaaaa gaaacaaa chr12:92861020-92861040 9 9.69e-05 TTAACTAA AAAAAAAA AAAA chr4:186319945-186319965 4 9.69e-05 GCC aaaaaaaa aaaaaaaaa chrX:69658968-69658988 5 9.69e-05 caga aaaaaaaa aaaaaaaa chr6:22194607-22194627 13 9.69e-05 TGACCAAAAA AAAAAAAA chr4:129207742-129207762 1 9.69e-05 . AAAAAAAA GAAAAAAGAA chr2:166060611-166060631 1 9.69e-05 . AAAAAAAA GAAAGAAAAA chrX:19905749-19905769 5 9.69e-05 aaaa aaaaaaaa aaaaaaaC chr11:102193513-10219353 5 9.69e-05 aaaa aaaaaaaa aaaaaaaa chr1:226862836-226862856 5 9.69e-05 aaaa aaaaaaaa aaaaaGGA chr4:46978375-46978395 6 9.69e-05 aaaaa aaaaaaaa aaaaaaa chr17:42295960-42295980 5 9.69e-05 CCAA AAAAAAAA AAAAAGAA chr4:87994431-87994451 2 9.69e-05 C aaaaaaaa aaaaaaaaaa chr5:151894598-151894618 5 9.69e-05 AGCT AAAAAAAA AAAAAAAA chr1:226369920-226369940 11 9.69e-05 gactgtctaa aaaaaaaa aa chr14:52347685-52347705 6 9.69e-05 aaaaa aaaaaaaa aaaaaaa chr12:4381198-4381218 6 9.69e-05 aaaaa aaaaaaaa aaaaaaa chr1:21444237-21444257 6 9.69e-05 aaaaa aaaaaaaa aaaaTTA chr5:150508506-150508526 6 9.69e-05 CAAAA AAAAAAAA AAAAAGG chr19:2264562-2264582 4 9.69e-05 caa aaaaaaaa aaaaaaaaa chr1:51954140-51954160 6 9.69e-05 TTGTA AAAAAAAA AAAAAAA chr6:53516202-53516222 5 9.69e-05 aaaa aaaaaaaa aaaGAGGT chr1:220164570-220164590 6 9.69e-05 aaaaa aaaaaaaa aaaaaaa chr12:95968138-95968158 6 9.69e-05 TTCTa aaaaaaaa aaaaaaa chr8:11108652-11108672 5 9.69e-05 aaaa aaaaaaaa aaaaaaaa chr14:98087070-98087090 5 9.69e-05 aaaa aaaaaaaa aaaaGCCC chr14:79400499-79400519 13 9.69e-05 ACCAAAAAAA AAAAAAAA chr2:11969563-11969583 12 9.69e-05 CACAGCCTTT AAAAAAAA A chrX:122547392-122547412 5 9.69e-05 aaaa aaaaaaaa aaaaaaaa chr12:42678123-42678143 5 9.69e-05 aaaa aaaaaaaa aaaagcaa chr8:65664728-65664748 4 9.69e-05 AGA AAAAAAAA AAAAATCTT chr14:68938413-68938433 1 9.69e-05 . aaaaaaaa aaaggaagaa chr2:166984562-166984582 6 9.69e-05 AAAAA AAAAAAAA AAAGTCA chr14:81940585-81940605 6 9.69e-05 CAGAA AAAAAAAA AAAAACC chr2:136873819-136873839 10 9.69e-05 TTAGGAGGA AAAAAAAA ATA chr16:46822053-46822073 11 9.69e-05 atgcaaaaaa aaaaaaaa aa chr11:118754464-11875448 13 9.69e-05 AGTGGAAAAA AAAAAAAA chr2:86595617-86595637 6 9.69e-05 TGGGa aaaaaaaa aaaaaaa chr15:66579937-66579957 6 9.69e-05 aaaaa aaaaaaaa aaaTTCA chr7:8218212-8218232 9 2.75e-04 tttttttt aaaaaaGA AGAC chrX:24072329-24072349 3 2.75e-04 AA AAAACAAA ACACACACAC chr6:152589551-152589571 1 2.75e-04 . AAAGAAAA TTTTGCCGGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:2185689-2185709 9.7e-05 5_[+2]_7 chr5:55289871-55289891 9.7e-05 11_[+2]_1 chrX:25739904-25739924 9.7e-05 5_[+2]_7 chr8:22841003-22841023 9.7e-05 4_[+2]_8 chr12:92861020-92861040 9.7e-05 8_[+2]_4 chr4:186319945-186319965 9.7e-05 3_[+2]_9 chrX:69658968-69658988 9.7e-05 4_[+2]_8 chr6:22194607-22194627 9.7e-05 12_[+2] chr4:129207742-129207762 9.7e-05 [+2]_12 chr2:166060611-166060631 9.7e-05 [+2]_12 chrX:19905749-19905769 9.7e-05 4_[+2]_8 chr11:102193513-10219353 9.7e-05 4_[+2]_8 chr1:226862836-226862856 9.7e-05 4_[+2]_8 chr4:46978375-46978395 9.7e-05 5_[+2]_7 chr17:42295960-42295980 9.7e-05 4_[+2]_8 chr4:87994431-87994451 9.7e-05 1_[+2]_11 chr5:151894598-151894618 9.7e-05 4_[+2]_8 chr1:226369920-226369940 9.7e-05 10_[+2]_2 chr14:52347685-52347705 9.7e-05 5_[+2]_7 chr12:4381198-4381218 9.7e-05 5_[+2]_7 chr1:21444237-21444257 9.7e-05 5_[+2]_7 chr5:150508506-150508526 9.7e-05 5_[+2]_7 chr19:2264562-2264582 9.7e-05 3_[+2]_9 chr1:51954140-51954160 9.7e-05 5_[+2]_7 chr6:53516202-53516222 9.7e-05 4_[+2]_8 chr1:220164570-220164590 9.7e-05 5_[+2]_7 chr12:95968138-95968158 9.7e-05 5_[+2]_7 chr8:11108652-11108672 9.7e-05 4_[+2]_8 chr14:98087070-98087090 9.7e-05 4_[+2]_8 chr14:79400499-79400519 9.7e-05 12_[+2] chr2:11969563-11969583 9.7e-05 11_[+2]_1 chrX:122547392-122547412 9.7e-05 4_[+2]_8 chr12:42678123-42678143 9.7e-05 4_[+2]_8 chr8:65664728-65664748 9.7e-05 3_[+2]_9 chr14:68938413-68938433 9.7e-05 [+2]_12 chr2:166984562-166984582 9.7e-05 5_[+2]_7 chr14:81940585-81940605 9.7e-05 5_[+2]_7 chr2:136873819-136873839 9.7e-05 9_[+2]_3 chr16:46822053-46822073 9.7e-05 10_[+2]_2 chr11:118754464-11875448 9.7e-05 12_[+2] chr2:86595617-86595637 9.7e-05 5_[+2]_7 chr15:66579937-66579957 9.7e-05 5_[+2]_7 chr7:8218212-8218232 0.00028 8_[+2]_4 chrX:24072329-24072349 0.00028 2_[+2]_10 chr6:152589551-152589571 0.00028 [+2]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAAAAAA width=8 seqs=45 chr17:2185689-2185709 ( 6) AAAAAAAA 1 chr5:55289871-55289891 ( 12) AAAAAAAA 1 chrX:25739904-25739924 ( 6) AAAAAAAA 1 chr8:22841003-22841023 ( 5) AAAAAAAA 1 chr12:92861020-92861040 ( 9) AAAAAAAA 1 chr4:186319945-186319965 ( 4) AAAAAAAA 1 chrX:69658968-69658988 ( 5) AAAAAAAA 1 chr6:22194607-22194627 ( 13) AAAAAAAA 1 chr4:129207742-129207762 ( 1) AAAAAAAA 1 chr2:166060611-166060631 ( 1) AAAAAAAA 1 chrX:19905749-19905769 ( 5) AAAAAAAA 1 chr11:102193513-10219353 ( 5) AAAAAAAA 1 chr1:226862836-226862856 ( 5) AAAAAAAA 1 chr4:46978375-46978395 ( 6) AAAAAAAA 1 chr17:42295960-42295980 ( 5) AAAAAAAA 1 chr4:87994431-87994451 ( 2) AAAAAAAA 1 chr5:151894598-151894618 ( 5) AAAAAAAA 1 chr1:226369920-226369940 ( 11) AAAAAAAA 1 chr14:52347685-52347705 ( 6) AAAAAAAA 1 chr12:4381198-4381218 ( 6) AAAAAAAA 1 chr1:21444237-21444257 ( 6) AAAAAAAA 1 chr5:150508506-150508526 ( 6) AAAAAAAA 1 chr19:2264562-2264582 ( 4) AAAAAAAA 1 chr1:51954140-51954160 ( 6) AAAAAAAA 1 chr6:53516202-53516222 ( 5) AAAAAAAA 1 chr1:220164570-220164590 ( 6) AAAAAAAA 1 chr12:95968138-95968158 ( 6) AAAAAAAA 1 chr8:11108652-11108672 ( 5) AAAAAAAA 1 chr14:98087070-98087090 ( 5) AAAAAAAA 1 chr14:79400499-79400519 ( 13) AAAAAAAA 1 chr2:11969563-11969583 ( 12) AAAAAAAA 1 chrX:122547392-122547412 ( 5) AAAAAAAA 1 chr12:42678123-42678143 ( 5) AAAAAAAA 1 chr8:65664728-65664748 ( 4) AAAAAAAA 1 chr14:68938413-68938433 ( 1) AAAAAAAA 1 chr2:166984562-166984582 ( 6) AAAAAAAA 1 chr14:81940585-81940605 ( 6) AAAAAAAA 1 chr2:136873819-136873839 ( 10) AAAAAAAA 1 chr16:46822053-46822073 ( 11) AAAAAAAA 1 chr11:118754464-11875448 ( 13) AAAAAAAA 1 chr2:86595617-86595637 ( 6) AAAAAAAA 1 chr15:66579937-66579957 ( 6) AAAAAAAA 1 chr7:8218212-8218232 ( 9) AAAAAAGA 1 chrX:24072329-24072349 ( 3) AAAACAAA 1 chr6:152589551-152589571 ( 1) AAAGAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 6.53808 E= 3.1e-058 166 -1214 -1214 -1214 166 -1214 -1214 -1214 166 -1214 -1214 -1214 163 -1214 -312 -1214 163 -312 -1214 -1214 166 -1214 -1214 -1214 163 -1214 -312 -1214 166 -1214 -1214 -1214 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 45 E= 3.1e-058 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.977778 0.000000 0.022222 0.000000 0.977778 0.022222 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.977778 0.000000 0.022222 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAA MEME-2 regular expression -------------------------------------------------------------------------------- AAAAAAAA -------------------------------------------------------------------------------- Time 2.70 secs. ******************************************************************************** ******************************************************************************** MOTIF CCWGRTGG MEME-3 width = 8 sites = 45 llr = 328 E-value = 7.3e-024 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCWGRTGG MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::624::: pos.-specific C 68::1::: probability G 2::753aa matrix T 224::6:: bits 2.4 ** 2.1 ** 1.9 ** 1.7 ** Relative 1.4 * ** Entropy 1.2 * * ** (10.5 bits) 0.9 ** * ** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CCAGGTGG consensus GTTAAG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCWGRTGG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr19:13305497-13305517 4 4.85e-06 CCT CCAGGTGG CGCTGTCGA chr16:69158053-69158073 11 1.26e-05 AGCAGCACCA CCTGGTGG CA chr4:77679636-77679656 6 1.26e-05 CATCT CCTGGTGG AAATAAG chr4:186017375-186017395 9 1.26e-05 CTCTGCCA CCTGGTGG CTTA chr8:17434548-17434568 8 1.26e-05 GGCTCCG CCAGGGGG CAGGA chr10:123494220-12349424 13 1.26e-05 TCTTCTGCCC CCTGGTGG chr1:46872185-46872205 4 2.35e-05 CCA CCAGATGG AGCCCTTGC chr2:180990406-180990426 7 2.35e-05 AGGCAG CCAGATGG CAGCAT chr22:20772592-20772612 7 2.35e-05 CAGCCG CCAGATGG CAGCAC chr2:43804617-43804637 7 2.83e-05 CCACCT GCAGGTGG ATAAGC chr12:97380913-97380933 1 4.09e-05 . CCAGAGGG CACAGCTGTC chr4:13658276-13658296 13 4.87e-05 CATCCAGGCA GCAGGGGG chr12:108070204-10807022 2 8.47e-05 A CTAGGTGG AGCCACACTT chr2:190935212-190935232 12 9.99e-05 CATTCTGGCC CCTGCTGG G chr6:141884136-141884156 13 1.25e-04 GCTTCTGCCA CCTAGTGG chr12:106780168-10678018 4 1.25e-04 CCA GCAGAGGG CAGTATGTT chr2:233470685-233470705 7 1.25e-04 TATCCA GCAGAGGG CGCGCC chr6:20528748-20528768 4 1.25e-04 ACC CCTAGTGG TTAAATTAT chr1:102033317-102033337 10 1.25e-04 CCACCTCCC CCTAGTGG CCA chr12:49147420-49147440 12 1.25e-04 TTAGACTCCA GCAGAGGG C chr7:35464666-35464686 1 1.25e-04 . GCAGAGGG CAGTGCAGTG chr1:160960223-160960243 1 1.25e-04 . CCTAGTGG TAGCATATCT chr7:6037013-6037033 4 1.37e-04 TCA CTAGGGGG CAGCTGAAC chr13:73383243-73383263 7 1.79e-04 TCACCA CTTGGGGG CAGTAT chr1:20539509-20539529 4 2.01e-04 CCA CTAGATGG CGCTGTGTC chr6:97074801-97074821 1 2.01e-04 . CTAGATGG CAGAAAATTG chr20:17485628-17485648 13 2.01e-04 AACTAAACCA CTAGATGG chr8:1729577-1729597 11 2.21e-04 CCATCTGGTG GCAAGTGG TA chr12:122028769-12202878 3 2.81e-04 CT GCTGCTGG GGTTTTTGTA chr12:67749797-67749817 4 2.81e-04 CTT CCAGGAGG TGGCGATAG chr6:43037882-43037902 7 2.81e-04 aatccc ctagaggg cgatac chr12:109255827-10925584 10 3.18e-04 CCAGTAGCC TCTGATGG GGT chr18:70320449-70320469 7 4.75e-04 CAGAGG CCTACTGG CTTTGA chr8:37248153-37248173 9 4.75e-04 CCTCTGGG CCAGAAGG GGGA chr10:22242712-22242732 9 4.75e-04 CACTGCCA TCAAGTGG TAAA chr11:47475938-47475958 5 5.83e-04 gcca tctgctgg tcctagac chr19:34827908-34827928 6 5.83e-04 TGCCC TCTGCTGG GTGCTTT chr12:112383205-11238322 1 5.83e-04 . GTAGAGGG AACCAGGATG chr3:169553992-169554012 1 5.83e-04 . ctaagggg aactgaaatt chr7:28429211-28429231 4 5.83e-04 CCT GTAGAGGG CGCTATTGA chr1:211649728-211649748 13 6.20e-04 ACCCACGCCC TCTAgtgg chr12:923535-923555 8 6.20e-04 GTAGCCC TCTAGTGG TTAAA chr15:59983600-59983620 7 6.63e-04 AATTCC CCACAGGG TGGCAG chr6:114176155-114176175 13 7.31e-04 GACCGAGACC GCTCGTGG chr6:160141828-160141848 1 7.70e-04 . tcaaatgg tgaccaccag -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCWGRTGG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:13305497-13305517 4.9e-06 3_[+3]_9 chr16:69158053-69158073 1.3e-05 10_[+3]_2 chr4:77679636-77679656 1.3e-05 5_[+3]_7 chr4:186017375-186017395 1.3e-05 8_[+3]_4 chr8:17434548-17434568 1.3e-05 7_[+3]_5 chr10:123494220-12349424 1.3e-05 12_[+3] chr1:46872185-46872205 2.3e-05 3_[+3]_9 chr2:180990406-180990426 2.3e-05 6_[+3]_6 chr22:20772592-20772612 2.3e-05 6_[+3]_6 chr2:43804617-43804637 2.8e-05 6_[+3]_6 chr12:97380913-97380933 4.1e-05 [+3]_12 chr4:13658276-13658296 4.9e-05 12_[+3] chr12:108070204-10807022 8.5e-05 1_[+3]_11 chr2:190935212-190935232 0.0001 11_[+3]_1 chr6:141884136-141884156 0.00013 12_[+3] chr12:106780168-10678018 0.00013 3_[+3]_9 chr2:233470685-233470705 0.00013 6_[+3]_6 chr6:20528748-20528768 0.00013 3_[+3]_9 chr1:102033317-102033337 0.00013 9_[+3]_3 chr12:49147420-49147440 0.00013 11_[+3]_1 chr7:35464666-35464686 0.00013 [+3]_12 chr1:160960223-160960243 0.00013 [+3]_12 chr7:6037013-6037033 0.00014 3_[+3]_9 chr13:73383243-73383263 0.00018 6_[+3]_6 chr1:20539509-20539529 0.0002 3_[+3]_9 chr6:97074801-97074821 0.0002 [+3]_12 chr20:17485628-17485648 0.0002 12_[+3] chr8:1729577-1729597 0.00022 10_[+3]_2 chr12:122028769-12202878 0.00028 2_[+3]_10 chr12:67749797-67749817 0.00028 3_[+3]_9 chr6:43037882-43037902 0.00028 6_[+3]_6 chr12:109255827-10925584 0.00032 9_[+3]_3 chr18:70320449-70320469 0.00047 6_[+3]_6 chr8:37248153-37248173 0.00047 8_[+3]_4 chr10:22242712-22242732 0.00047 8_[+3]_4 chr11:47475938-47475958 0.00058 4_[+3]_8 chr19:34827908-34827928 0.00058 5_[+3]_7 chr12:112383205-11238322 0.00058 [+3]_12 chr3:169553992-169554012 0.00058 [+3]_12 chr7:28429211-28429231 0.00058 3_[+3]_9 chr1:211649728-211649748 0.00062 12_[+3] chr12:923535-923555 0.00062 7_[+3]_5 chr15:59983600-59983620 0.00066 6_[+3]_6 chr6:114176155-114176175 0.00073 12_[+3] chr6:160141828-160141848 0.00077 [+3]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCWGRTGG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCWGRTGG width=8 seqs=45 chr19:13305497-13305517 ( 4) CCAGGTGG 1 chr16:69158053-69158073 ( 11) CCTGGTGG 1 chr4:77679636-77679656 ( 6) CCTGGTGG 1 chr4:186017375-186017395 ( 9) CCTGGTGG 1 chr8:17434548-17434568 ( 8) CCAGGGGG 1 chr10:123494220-12349424 ( 13) CCTGGTGG 1 chr1:46872185-46872205 ( 4) CCAGATGG 1 chr2:180990406-180990426 ( 7) CCAGATGG 1 chr22:20772592-20772612 ( 7) CCAGATGG 1 chr2:43804617-43804637 ( 7) GCAGGTGG 1 chr12:97380913-97380933 ( 1) CCAGAGGG 1 chr4:13658276-13658296 ( 13) GCAGGGGG 1 chr12:108070204-10807022 ( 2) CTAGGTGG 1 chr2:190935212-190935232 ( 12) CCTGCTGG 1 chr6:141884136-141884156 ( 13) CCTAGTGG 1 chr12:106780168-10678018 ( 4) GCAGAGGG 1 chr2:233470685-233470705 ( 7) GCAGAGGG 1 chr6:20528748-20528768 ( 4) CCTAGTGG 1 chr1:102033317-102033337 ( 10) CCTAGTGG 1 chr12:49147420-49147440 ( 12) GCAGAGGG 1 chr7:35464666-35464686 ( 1) GCAGAGGG 1 chr1:160960223-160960243 ( 1) CCTAGTGG 1 chr7:6037013-6037033 ( 4) CTAGGGGG 1 chr13:73383243-73383263 ( 7) CTTGGGGG 1 chr1:20539509-20539529 ( 4) CTAGATGG 1 chr6:97074801-97074821 ( 1) CTAGATGG 1 chr20:17485628-17485648 ( 13) CTAGATGG 1 chr8:1729577-1729597 ( 11) GCAAGTGG 1 chr12:122028769-12202878 ( 3) GCTGCTGG 1 chr12:67749797-67749817 ( 4) CCAGGAGG 1 chr6:43037882-43037902 ( 7) CTAGAGGG 1 chr12:109255827-10925584 ( 10) TCTGATGG 1 chr18:70320449-70320469 ( 7) CCTACTGG 1 chr8:37248153-37248173 ( 9) CCAGAAGG 1 chr10:22242712-22242732 ( 9) TCAAGTGG 1 chr11:47475938-47475958 ( 5) TCTGCTGG 1 chr19:34827908-34827928 ( 6) TCTGCTGG 1 chr12:112383205-11238322 ( 1) GTAGAGGG 1 chr3:169553992-169554012 ( 1) CTAAGGGG 1 chr7:28429211-28429231 ( 4) GTAGAGGG 1 chr1:211649728-211649748 ( 13) TCTAGTGG 1 chr12:923535-923555 ( 8) TCTAGTGG 1 chr15:59983600-59983620 ( 7) CCACAGGG 1 chr6:114176155-114176175 ( 13) GCTCGTGG 1 chr6:160141828-160141848 ( 1) TCAAATGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCWGRTGG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.05199 E= 7.3e-024 -1214 163 34 -94 -1214 201 -1214 -42 93 -1214 -1214 42 -37 -212 188 -1214 34 -80 134 -1214 -282 -1214 69 111 -1214 -1214 237 -1214 -1214 -1214 237 -1214 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCWGRTGG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 45 E= 7.3e-024 0.000000 0.600000 0.244444 0.155556 0.000000 0.777778 0.000000 0.222222 0.600000 0.000000 0.000000 0.400000 0.244444 0.044444 0.711111 0.000000 0.400000 0.111111 0.488889 0.000000 0.044444 0.000000 0.311111 0.644444 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCWGRTGG MEME-3 regular expression -------------------------------------------------------------------------------- [CG][CT][AT][GA][GA][TG]GG -------------------------------------------------------------------------------- Time 3.70 secs. ******************************************************************************** ******************************************************************************** MOTIF YGCCCYCY MEME-4 width = 8 sites = 21 llr = 171 E-value = 2.2e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif YGCCCYCY MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::::3::: pos.-specific C 6:9a7683 probability G :8:::::: matrix T 42:::427 bits 2.4 * 2.1 * 1.9 ** 1.7 *** Relative 1.4 **** * Entropy 1.2 ******* (11.8 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CGCCCCCT consensus T ATTC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGCCCYCY MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr1:53152068-53152088 13 2.97e-06 ATGGCAAGCT CGCCCCCT chr10:81227324-81227344 12 2.97e-06 TGTTCTCCAG CGCCCCCT A chrX:19352496-19352516 8 1.41e-05 GTTAGAA TGCCCCCT GTGGG chr2:10188994-10189014 4 1.41e-05 CAG TGCCCCCT TCTGTTCAC chr19:47343931-47343951 3 2.49e-05 GT CGCCACCT GCTGACAGCT chr2:216134748-216134768 3 3.97e-05 AG TGCCCTCT AGCGGTCAGT chr17:884394-884414 8 4.27e-05 GAAAACC CGCCCCTC TCAGA chr19:10111079-10111099 8 5.18e-05 cctctgg ctccccct actgt chr6:33292200-33292220 3 6.23e-05 CC CTCCCCCC TCAAAAGTAT chr6:31797894-31797914 4 7.69e-05 CAC TGCCACCT TCTGTACGA chrX:130887397-130887417 2 9.83e-05 C CGCCCTTC CTGCCTCAAA chrX:130936983-130937003 3 9.83e-05 CC CGCCCTTC CTGTGTGAAA chr11:45315329-45315349 1 9.83e-05 . TGCCACCC GGAGGATGTG chrX:115074685-115074705 10 1.05e-04 CCAGGTCCA CTCCCTCT GCC chrX:123094514-123094534 5 1.32e-04 CGAC CGCCACTT TCAAAACC chrX:115066596-115066616 9 1.32e-04 CAGGTCCA CTCCCTCC ACCC chr12:15148933-15148953 7 1.44e-04 TTAGAC TGCCATCT TGTGGA chr16:4598916-4598936 13 1.44e-04 CTATAACCAG TGCCATCT chr12:5158499-5158519 10 1.86e-04 TGCTGGGGA CGTCCCCT AGG chrX:130863569-130863589 2 2.00e-04 C TGCCCTTC CTGTCTGAAA chr15:55401202-55401222 12 2.35e-04 CAGGCTGCTC CGGCCTCT G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGCCCYCY MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:53152068-53152088 3e-06 12_[+4] chr10:81227324-81227344 3e-06 11_[+4]_1 chrX:19352496-19352516 1.4e-05 7_[+4]_5 chr2:10188994-10189014 1.4e-05 3_[+4]_9 chr19:47343931-47343951 2.5e-05 2_[+4]_10 chr2:216134748-216134768 4e-05 2_[+4]_10 chr17:884394-884414 4.3e-05 7_[+4]_5 chr19:10111079-10111099 5.2e-05 7_[+4]_5 chr6:33292200-33292220 6.2e-05 2_[+4]_10 chr6:31797894-31797914 7.7e-05 3_[+4]_9 chrX:130887397-130887417 9.8e-05 1_[+4]_11 chrX:130936983-130937003 9.8e-05 2_[+4]_10 chr11:45315329-45315349 9.8e-05 [+4]_12 chrX:115074685-115074705 0.00011 9_[+4]_3 chrX:123094514-123094534 0.00013 4_[+4]_8 chrX:115066596-115066616 0.00013 8_[+4]_4 chr12:15148933-15148953 0.00014 6_[+4]_6 chr16:4598916-4598936 0.00014 12_[+4] chr12:5158499-5158519 0.00019 9_[+4]_3 chrX:130863569-130863589 0.0002 1_[+4]_11 chr15:55401202-55401222 0.00023 11_[+4]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGCCCYCY MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YGCCCYCY width=8 seqs=21 chr1:53152068-53152088 ( 13) CGCCCCCT 1 chr10:81227324-81227344 ( 12) CGCCCCCT 1 chrX:19352496-19352516 ( 8) TGCCCCCT 1 chr2:10188994-10189014 ( 4) TGCCCCCT 1 chr19:47343931-47343951 ( 3) CGCCACCT 1 chr2:216134748-216134768 ( 3) TGCCCTCT 1 chr17:884394-884414 ( 8) CGCCCCTC 1 chr19:10111079-10111099 ( 8) CTCCCCCT 1 chr6:33292200-33292220 ( 3) CTCCCCCC 1 chr6:31797894-31797914 ( 4) TGCCACCT 1 chrX:130887397-130887417 ( 2) CGCCCTTC 1 chrX:130936983-130937003 ( 3) CGCCCTTC 1 chr11:45315329-45315349 ( 1) TGCCACCC 1 chrX:115074685-115074705 ( 10) CTCCCTCT 1 chrX:123094514-123094534 ( 5) CGCCACTT 1 chrX:115066596-115066616 ( 9) CTCCCTCC 1 chr12:15148933-15148953 ( 7) TGCCATCT 1 chr16:4598916-4598936 ( 13) TGCCATCT 1 chr12:5158499-5158519 ( 10) CGTCCCCT 1 chrX:130863569-130863589 ( 2) TGCCCTTC 1 chr15:55401202-55401222 ( 12) CGGCCTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGCCCYCY MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 9.12759 E= 2.2e-006 -1104 168 -1104 35 -1104 -1104 207 -65 -1104 223 -202 -264 -1104 237 -1104 -1104 -14 188 -1104 -1104 -1104 156 -1104 52 -1104 198 -1104 -32 -1104 78 -1104 116 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGCCCYCY MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 21 E= 2.2e-006 0.000000 0.619048 0.000000 0.380952 0.000000 0.000000 0.809524 0.190476 0.000000 0.904762 0.047619 0.047619 0.000000 1.000000 0.000000 0.000000 0.285714 0.714286 0.000000 0.000000 0.000000 0.571429 0.000000 0.428571 0.000000 0.761905 0.000000 0.238095 0.000000 0.333333 0.000000 0.666667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGCCCYCY MEME-4 regular expression -------------------------------------------------------------------------------- [CT]GCC[CA][CT][CT][TC] -------------------------------------------------------------------------------- Time 6.89 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTTTTTT MEME-5 width = 8 sites = 15 llr = 124 E-value = 2.3e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::2 pos.-specific C ::::::21 probability G :::::::1 matrix T aaaaaa86 bits 2.4 2.1 1.9 1.7 ****** Relative 1.4 ****** Entropy 1.2 ******* (11.9 bits) 0.9 ******* 0.7 ******* 0.5 ******* 0.2 ******** 0.0 -------- Multilevel TTTTTTTT consensus CA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr15:40388352-40388372 12 6.22e-05 Cttttttttt tttttttt t chr14:66826369-66826389 13 6.22e-05 CTTTTTTTTT TTTTTTTT chr12:54585460-54585480 13 6.22e-05 TTTTTTTTTT TTTTTTTT chr6:110116304-110116324 13 6.22e-05 tttttttttt tttttttt chr14:24801442-24801462 10 6.22e-05 CTTTTTTTT TTTTTTTT TCA chr20:36621512-36621532 12 6.22e-05 CTTTTTTTTT TTTTTTTT G chr4:148758791-148758811 13 6.22e-05 gttttttttt tttttttt chr6:16317095-16317115 11 6.22e-05 Cttttttttt tttttttt tt chr6:21648923-21648943 13 6.22e-05 Cttttttttt tttttttt chr17:70000999-70001019 1 1.43e-04 . tttttttc tttttttttt chr2:64789469-64789489 13 2.08e-04 CTTTTTTTTT TTTTTTTA chr12:27020101-27020121 13 2.49e-04 CCTTTTTTTT TTTTTTTG chr7:27960951-27960971 13 2.75e-04 CTTTTTTTTT TTTTTTCC chrX:130896884-130896904 7 3.17e-04 GTAGCA TTTTTTCA GACAGA chrX:130875166-130875186 5 3.17e-04 GGCG TTTTTTCA GACGGGAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr15:40388352-40388372 6.2e-05 11_[+5]_1 chr14:66826369-66826389 6.2e-05 12_[+5] chr12:54585460-54585480 6.2e-05 12_[+5] chr6:110116304-110116324 6.2e-05 12_[+5] chr14:24801442-24801462 6.2e-05 9_[+5]_3 chr20:36621512-36621532 6.2e-05 11_[+5]_1 chr4:148758791-148758811 6.2e-05 12_[+5] chr6:16317095-16317115 6.2e-05 10_[+5]_2 chr6:21648923-21648943 6.2e-05 12_[+5] chr17:70000999-70001019 0.00014 [+5]_12 chr2:64789469-64789489 0.00021 12_[+5] chr12:27020101-27020121 0.00025 12_[+5] chr7:27960951-27960971 0.00027 12_[+5] chrX:130896884-130896904 0.00032 6_[+5]_6 chrX:130875166-130875186 0.00032 4_[+5]_8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTTTTTT width=8 seqs=15 chr15:40388352-40388372 ( 12) TTTTTTTT 1 chr14:66826369-66826389 ( 13) TTTTTTTT 1 chr12:54585460-54585480 ( 13) TTTTTTTT 1 chr6:110116304-110116324 ( 13) TTTTTTTT 1 chr14:24801442-24801462 ( 10) TTTTTTTT 1 chr20:36621512-36621532 ( 12) TTTTTTTT 1 chr4:148758791-148758811 ( 13) TTTTTTTT 1 chr6:16317095-16317115 ( 11) TTTTTTTT 1 chr6:21648923-21648943 ( 13) TTTTTTTT 1 chr17:70000999-70001019 ( 1) TTTTTTTC 1 chr2:64789469-64789489 ( 13) TTTTTTTA 1 chr12:27020101-27020121 ( 13) TTTTTTTG 1 chr7:27960951-27960971 ( 13) TTTTTTCC 1 chrX:130896884-130896904 ( 7) TTTTTTCA 1 chrX:130875166-130875186 ( 5) TTTTTTCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.42938 E= 2.3e-001 -1055 -1055 -1055 175 -1055 -1055 -1055 175 -1055 -1055 -1055 175 -1055 -1055 -1055 175 -1055 -1055 -1055 175 -1055 -1055 -1055 175 -1055 5 -1055 142 -66 -54 -153 101 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 2.3e-001 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.200000 0.000000 0.800000 0.200000 0.133333 0.066667 0.600000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-5 regular expression -------------------------------------------------------------------------------- TTTTTT[TC][TA] -------------------------------------------------------------------------------- Time 9.44 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr8:76314444-76314464 7.59e-01 20 chr5:123006887-123006907 4.13e-04 5_[+1(6.22e-05)]_7 chr15:66579937-66579957 2.04e-01 [+2(9.69e-05)]_[+2(9.69e-05)]_4 chr17:20020131-20020151 8.77e-04 [+1(6.22e-05)]_12 chrX:48489964-48489984 6.38e-01 20 chr2:86595617-86595637 2.04e-01 4_[+2(9.69e-05)]_[+2(9.69e-05)] chr7:27960951-27960971 1.20e-03 3_[+1(6.22e-05)]_9 chr13:20771656-20771676 9.23e-01 20 chr6:87776340-87776360 9.75e-01 20 chr1:174713270-174713290 6.84e-01 20 chr2:4007079-4007099 6.15e-01 20 chr5:158526877-158526897 3.69e-02 20 chr11:118754464-11875448 1.25e-01 7_[+2(9.69e-05)]_5 chr10:22242712-22242732 8.60e-02 20 chrX:130875166-130875186 5.39e-03 20 chr10:123494220-12349424 1.07e-05 12_[+3(1.26e-05)] chr19:15202856-15202876 9.98e-01 20 chr22:20772592-20772612 4.29e-02 6_[+3(2.35e-05)]_6 chr4:75055161-75055181 6.73e-01 20 chr15:72036490-72036510 1.25e-03 [+1(6.22e-05)]_[+1(6.22e-05)]_4 chrX:115066596-115066616 2.28e-01 20 chr6:21648923-21648943 7.87e-04 3_[+1(6.22e-05)]_[+1(6.22e-05)]_1 chr16:46822053-46822073 1.90e-01 4_[+2(9.69e-05)]_[+2(9.69e-05)] chr7:28429211-28429231 3.16e-01 20 chr9:94489710-94489730 3.07e-01 20 chr2:10188994-10189014 1.18e-02 3_[+4(1.41e-05)]_9 chr11:31418999-31419019 8.00e-01 20 chr2:136873819-136873839 2.28e-02 8_[+2(9.69e-05)]_4 chr7:18395946-18395966 1.35e-01 20 chr6:16317095-16317115 1.22e-03 1_[+1(6.22e-05)]_[+1(6.22e-05)]_3 chr14:37023032-37023052 5.45e-01 20 chr8:72740304-72740324 7.19e-01 20 chr14:81940585-81940605 2.04e-01 3_[+2(9.69e-05)]_9 chr6:43037882-43037902 2.11e-01 20 chr12:67749797-67749817 3.27e-01 20 chrX:56829413-56829433 8.66e-01 20 chr6:39949011-39949031 9.84e-01 20 chr6:129929247-129929267 2.63e-04 2_[+1(6.22e-05)]_10 chr8:56941561-56941581 2.91e-01 20 chr11:124285434-12428545 6.14e-01 20 chr5:118668798-118668818 1.01e-03 [+1(6.22e-05)]_12 chr2:166984562-166984582 2.04e-01 [+2(9.69e-05)]_[+2(9.69e-05)]_4 chr14:68938413-68938433 1.79e-01 [+2(9.69e-05)]_12 chr3:169553992-169554012 3.42e-01 20 chr6:41516525-41516545 9.47e-01 20 chr8:65664728-65664748 2.04e-01 2_[+2(9.69e-05)]_10 chr12:42678123-42678143 2.04e-01 [+2(9.69e-05)]_[+2(9.69e-05)]_4 chrX:122547392-122547412 2.05e-01 [+2(9.69e-05)]_[+2(9.69e-05)]_4 chr2:11969563-11969583 5.43e-02 11_[+2(9.69e-05)]_1 chr2:216134748-216134768 3.12e-02 2_[+4(3.97e-05)]_10 chr4:130284036-130284056 4.91e-01 20 chr9:75815809-75815829 9.21e-01 20 chr3:50384808-50384828 9.82e-01 20 chrX:115074685-115074705 1.30e-01 20 chr1:160960223-160960243 1.71e-01 20 chr15:40509593-40509613 8.27e-01 20 chr12:113634947-11363496 9.92e-01 20 chr11:14476753-14476773 8.10e-01 20 chr18:3995686-3995706 9.57e-02 20 chr8:17434548-17434568 2.99e-02 7_[+3(1.26e-05)]_5 chr5:96088320-96088340 9.79e-01 20 chr11:7716081-7716101 9.60e-01 20 chr5:38994576-38994596 5.54e-01 20 chr12:57151451-57151471 3.64e-01 20 chr6:114176155-114176175 4.32e-01 20 chr7:6037013-6037033 1.61e-01 20 chr12:97380913-97380933 1.03e-01 [+3(4.09e-05)]_12 chr3:107379387-107379407 9.53e-01 20 chr17:46429384-46429404 8.62e-01 20 chr10:131908131-13190815 9.01e-01 20 chr12:112383205-11238322 4.16e-01 20 chr20:17485628-17485648 1.14e-01 20 chr14:79400499-79400519 1.86e-01 5_[+2(9.69e-05)]_7 chr1:234624530-234624550 7.22e-05 5_[+1(6.22e-05)]_7 chrX:123094514-123094534 2.06e-01 20 chr14:98087070-98087090 2.04e-01 [+2(9.69e-05)]_[+2(9.69e-05)]_4 chr8:8350905-8350925 2.24e-01 20 chr4:148758791-148758811 1.16e-03 3_[+1(6.22e-05)]_[+1(6.22e-05)]_1 chr19:17010702-17010722 2.50e-04 7_[+1(6.22e-05)]_5 chr3:105405325-105405345 4.71e-01 20 chr19:34827908-34827928 5.09e-03 [+4(3.97e-05)]_12 chr11:133280485-13328050 1.61e-04 1_[+1(6.22e-05)]_11 chr20:5816738-5816758 1.07e-03 3_[+1(6.22e-05)]_9 chr8:11108652-11108672 2.05e-01 [+2(9.69e-05)]_[+2(9.69e-05)]_4 chr20:36621512-36621532 1.21e-03 2_[+1(6.22e-05)]_[+1(6.22e-05)]_2 chr11:124633253-12463327 2.99e-01 20 chr19:47343931-47343951 1.75e-02 2_[+4(2.49e-05)]_10 chr7:70294327-70294347 3.79e-01 20 chr20:3096354-3096374 3.74e-01 20 chr13:96313444-96313464 1.00e+00 20 chr4:13658276-13658296 1.33e-01 12_[+3(4.87e-05)] chr8:124706219-124706239 4.37e-05 12_[+1(6.22e-05)] chr1:186692079-186692099 1.03e-03 1_[+1(6.22e-05)]_11 chr12:95968138-95968158 1.92e-01 4_[+2(9.69e-05)]_[+2(9.69e-05)] chr1:220164570-220164590 2.05e-01 [+2(9.69e-05)]_[+2(9.69e-05)]_4 chr5:138161130-138161150 2.26e-01 20 chr13:73383243-73383263 5.43e-02 20 chr2:43804617-43804637 8.17e-02 6_[+3(2.83e-05)]_6 chr15:84662510-84662530 5.95e-04 20 chr8:21771312-21771332 2.27e-04 [+1(6.22e-05)]_12 chr5:146833579-146833599 9.44e-01 20 chrX:115057303-115057323 8.27e-01 20 chrX:130845207-130845227 5.69e-01 20 chr15:59983600-59983620 1.20e-01 20 chr7:35464666-35464686 2.12e-01 20 chr20:58524318-58524338 6.87e-01 20 chr4:186017375-186017395 5.14e-04 8_[+3(1.26e-05)]_4 chr10:7453067-7453087 9.98e-01 20 chr11:111802705-11180272 9.91e-01 20 chr6:97074801-97074821 1.56e-01 20 chr11:47475938-47475958 3.58e-01 20 chrX:130868881-130868901 3.47e-01 20 chr2:180990406-180990426 5.64e-02 6_[+3(2.35e-05)]_6 chr10:85786700-85786720 7.65e-04 [+1(6.22e-05)]_12 chrX:130912714-130912734 8.37e-01 20 chr6:53516202-53516222 1.71e-01 [+2(9.69e-05)]_12 chr1:51954140-51954160 1.94e-01 4_[+2(9.69e-05)]_[+2(9.69e-05)] chr10:81227324-81227344 3.37e-03 11_[+4(2.97e-06)]_1 chr4:77679636-77679656 2.76e-02 5_[+3(1.26e-05)]_7 chr12:923535-923555 6.91e-02 20 chr17:7816451-7816471 9.65e-01 20 chr16:4598916-4598936 2.11e-01 20 chr12:8089053-8089073 6.50e-01 20 chr5:55232125-55232145 8.71e-01 20 chr7:149232522-149232542 9.91e-01 20 chr19:2264562-2264582 2.04e-01 1_[+2(9.69e-05)]_[+2(9.69e-05)]_3 chr10:7914139-7914159 9.02e-01 20 chr12:108070204-10807022 9.74e-02 1_[+3(8.47e-05)]_11 chr1:9352927-9352947 3.94e-02 20 chr5:150508506-150508526 1.79e-01 1_[+2(9.69e-05)]_[+2(9.69e-05)]_3 chr10:63843027-63843047 8.01e-01 20 chr3:127415195-127415215 8.47e-01 20 chr15:57515798-57515818 9.38e-01 20 chr3:32440720-32440740 1.03e-01 20 chr8:127836823-127836843 6.13e-01 20 chr12:122028769-12202878 1.17e-02 20 chr4:175286354-175286374 7.87e-01 20 chr7:140712006-140712026 9.23e-01 20 chr6:152589551-152589571 5.58e-02 20 chr19:13305497-13305517 1.95e-02 3_[+3(4.85e-06)]_9 chr6:31797894-31797914 8.92e-02 3_[+4(7.69e-05)]_9 chr14:24801442-24801462 1.22e-03 1_[+1(6.22e-05)]_[+1(6.22e-05)]_3 chr6:110116304-110116324 1.25e-03 [+1(6.22e-05)]_[+1(6.22e-05)]_4 chr13:49154504-49154524 7.61e-01 20 chr12:49147420-49147440 1.03e-01 20 chr21:26412226-26412246 2.12e-01 20 chr15:55401202-55401222 1.67e-01 20 chr1:102033317-102033337 2.21e-03 4_[+4(5.18e-05)]_8 chr12:116504605-11650462 4.32e-01 20 chr6:20528748-20528768 1.97e-01 20 chr1:21444237-21444257 2.05e-01 [+2(9.69e-05)]_[+2(9.69e-05)]_4 chr1:46872185-46872205 4.18e-02 3_[+3(2.35e-05)]_9 chr2:233470685-233470705 1.65e-01 20 chr9:22239127-22239147 1.25e-03 [+1(6.22e-05)]_[+1(6.22e-05)]_4 chr12:106780168-10678018 1.74e-01 20 chr17:884394-884414 1.17e-01 7_[+4(4.27e-05)]_5 chr5:35003673-35003693 1.05e-04 10_[+1(6.22e-05)]_2 chr19:10111079-10111099 4.32e-02 7_[+4(5.18e-05)]_5 chrX:24072329-24072349 3.35e-01 20 chr12:4381198-4381218 2.05e-01 [+2(9.69e-05)]_[+2(9.69e-05)]_4 chr11:35843514-35843534 9.84e-01 20 chrX:130863569-130863589 9.28e-02 20 chr3:18430754-18430774 8.77e-04 [+1(6.22e-05)]_[+1(6.22e-05)]_4 chr6:144665170-144665190 7.52e-01 20 chr14:52347685-52347705 2.05e-01 [+2(9.69e-05)]_[+2(9.69e-05)]_4 chr16:69158053-69158073 6.60e-03 10_[+3(1.26e-05)]_2 chr1:172711974-172711994 7.54e-01 20 chr7:66949403-66949423 8.33e-01 20 chr11:86002996-86003016 9.72e-01 20 chr1:226369920-226369940 1.86e-01 8_[+2(9.69e-05)]_4 chr1:20539509-20539529 2.15e-01 20 chr8:28727820-28727840 9.56e-01 20 chr11:30367812-30367832 5.74e-01 20 chr6:33292200-33292220 6.73e-02 2_[+4(6.23e-05)]_10 chr4:77669974-77669994 1.25e-03 [+1(6.22e-05)]_[+1(6.22e-05)]_4 chr4:96077478-96077498 5.83e-02 20 chr5:151894598-151894618 1.92e-01 4_[+2(9.69e-05)]_[+2(9.69e-05)] chrX:130886577-130886597 1.20e-01 20 chr3:149687872-149687892 9.98e-01 20 chr4:87994431-87994451 2.04e-01 1_[+2(9.69e-05)]_[+2(9.69e-05)]_3 chr2:64789469-64789489 7.87e-04 3_[+1(6.22e-05)]_[+1(6.22e-05)]_1 chr2:64367996-64368016 3.15e-01 20 chr17:42295960-42295980 1.86e-01 2_[+2(9.69e-05)]_10 chr1:51972421-51972441 7.19e-01 20 chr4:46978375-46978395 2.05e-01 [+2(9.69e-05)]_[+2(9.69e-05)]_4 chr1:226862836-226862856 1.79e-01 [+2(9.69e-05)]_[+2(9.69e-05)]_4 chr11:102193513-10219353 2.05e-01 [+2(9.69e-05)]_[+2(9.69e-05)]_4 chr11:45315329-45315349 4.15e-02 [+4(9.83e-05)]_12 chr1:8532883-8532903 8.38e-01 20 chrX:19905749-19905769 2.05e-01 [+2(9.69e-05)]_[+2(9.69e-05)]_4 chr2:166060611-166060631 2.03e-01 [+2(9.69e-05)]_12 chr12:54585460-54585480 1.25e-03 1_[+1(6.22e-05)]_[+1(6.22e-05)]_3 chr4:129207742-129207762 1.90e-01 [+2(9.69e-05)]_12 chr12:5158499-5158519 5.83e-02 20 chr4:74519525-74519545 8.56e-01 20 chr7:8218212-8218232 1.40e-05 [+1(6.22e-05)]_12 chrX:130902405-130902425 3.16e-01 20 chr6:160141828-160141848 2.82e-01 20 chr13:39396449-39396469 7.09e-01 20 chr2:30937174-30937194 6.73e-04 5_[+1(6.22e-05)]_7 chr3:151987644-151987664 8.21e-01 20 chr19:50094337-50094357 2.17e-05 11_[+1(6.22e-05)]_1 chr22:25477549-25477569 6.57e-01 20 chr11:122754295-12275431 1.87e-04 [+1(6.22e-05)]_12 chr13:25302303-25302323 1.82e-01 20 chr2:190935212-190935232 5.30e-03 11_[+3(9.99e-05)]_1 chr4:106635608-106635628 1.20e-04 12_[+1(6.22e-05)] chr8:37248153-37248173 3.88e-01 20 chr3:183613204-183613224 7.09e-01 20 chr6:22194607-22194627 1.85e-01 7_[+2(9.69e-05)]_5 chrX:130936983-130937003 9.53e-02 2_[+4(9.83e-05)]_10 chr17:70000999-70001019 5.05e-04 8_[+1(6.22e-05)]_4 chrX:69658968-69658988 2.04e-01 3_[+2(9.69e-05)]_[+2(9.69e-05)]_1 chrX:130887397-130887417 9.66e-02 1_[+4(9.83e-05)]_11 chr12:50147723-50147743 6.25e-01 20 chr4:186319945-186319965 1.86e-01 3_[+2(9.69e-05)]_[+2(9.69e-05)]_1 chr13:51467834-51467854 9.99e-01 20 chr3:148673431-148673451 8.21e-01 20 chr13:91708790-91708810 8.40e-01 20 chr1:53152068-53152088 1.41e-02 12_[+4(2.97e-06)] chr1:211649728-211649748 2.05e-03 7_[+4(9.49e-06)]_5 chrX:130896884-130896904 5.82e-03 20 chr1:150505213-150505233 3.30e-01 20 chrX:19352496-19352516 8.47e-03 7_[+4(1.41e-05)]_5 chr8:1729577-1729597 1.91e-01 20 chrX:56790289-56790309 9.69e-01 20 chr12:27020101-27020121 7.56e-04 4_[+1(6.22e-05)]_8 chr10:112625643-11262566 7.02e-01 20 chr12:92861020-92861040 1.92e-01 6_[+2(9.69e-05)]_6 chr21:28221954-28221974 6.86e-01 20 chr8:117460311-117460331 8.63e-01 20 chr8:22841003-22841023 2.04e-01 [+2(9.69e-05)]_12 chr20:30048469-30048489 5.96e-01 20 chr12:15148933-15148953 4.57e-02 20 chr21:30848981-30849001 1.24e-01 20 chr12:109255827-10925584 1.08e-01 20 chr5:88042260-88042280 5.17e-04 [+1(6.22e-05)]_12 chr18:70320449-70320469 1.81e-01 20 chr11:14353266-14353286 9.98e-01 20 chr6:141884136-141884156 2.58e-03 7_[+4(7.69e-05)]_5 chr14:66826369-66826389 1.22e-03 3_[+1(6.22e-05)]_[+1(6.22e-05)]_1 chrX:25739904-25739924 2.05e-01 [+2(9.69e-05)]_[+2(9.69e-05)]_4 chr1:171455235-171455255 7.83e-04 11_[+1(6.22e-05)]_1 chr6:88541881-88541901 5.75e-04 10_[+1(6.22e-05)]_2 chr6:3126774-3126794 8.90e-01 20 chr5:55289871-55289891 1.91e-01 5_[+2(9.69e-05)]_7 chr17:2185689-2185709 2.05e-01 [+2(9.69e-05)]_[+2(9.69e-05)]_4 chr8:66946013-66946033 3.06e-04 [+1(6.22e-05)]_12 chr15:40388352-40388372 1.22e-03 2_[+1(6.22e-05)]_[+1(6.22e-05)]_2 chr1:151128635-151128655 9.21e-01 20 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n10.farnam.hpc.yale.internal ********************************************************************************