******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/ZNF24.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr1:156414396-156414416 1.0000 20 chr1:18929139-18929159 1.0000 20 chr9:135865668-135865688 1.0000 20 chr19:841500-841520 1.0000 20 chr9:139474192-139474212 1.0000 20 chr19:4232844-4232864 1.0000 20 chr9:136599482-136599502 1.0000 20 chr22:50336307-50336327 1.0000 20 chr6:20092411-20092431 1.0000 20 chr20:48730280-48730300 1.0000 20 chr19:3140753-3140773 1.0000 20 chr20:62175298-62175318 1.0000 20 chr11:114484009-11448402 1.0000 20 chr16:22960330-22960350 1.0000 20 chr20:61688980-61689000 1.0000 20 chrX:1609276-1609296 1.0000 20 chr11:114494616-11449463 1.0000 20 chr1:15068969-15068989 1.0000 20 chr21:37792547-37792567 1.0000 20 chr15:75083026-75083046 1.0000 20 chr6:11381735-11381755 1.0000 20 chrX:1609685-1609705 1.0000 20 chr11:1223250-1223270 1.0000 20 chrX:119798125-119798145 1.0000 20 chr14:80680042-80680062 1.0000 20 chr22:20105538-20105558 1.0000 20 chr19:17593869-17593889 1.0000 20 chr10:119620532-11962055 1.0000 20 chr3:189666388-189666408 1.0000 20 chr9:139042763-139042783 1.0000 20 chr16:829076-829096 1.0000 20 chr1:16533761-16533781 1.0000 20 chr3:53763904-53763924 1.0000 20 chr4:1170583-1170603 1.0000 20 chr9:139475797-139475817 1.0000 20 chr4:3608339-3608359 1.0000 20 chr11:14170404-14170424 1.0000 20 chr5:1035339-1035359 1.0000 20 chr19:4197896-4197916 1.0000 20 chr4:703245-703265 1.0000 20 chr6:149798128-149798148 1.0000 20 chr17:75662078-75662098 1.0000 20 chr1:200860061-200860081 1.0000 20 chr6:159026561-159026581 1.0000 20 chr5:172192063-172192083 1.0000 20 chr11:114477638-11447765 1.0000 20 chr1:26718126-26718146 1.0000 20 chr13:59279260-59279280 1.0000 20 chr1:23922235-23922255 1.0000 20 chrX:1608462-1608482 1.0000 20 chr6:150658033-150658053 1.0000 20 chr1:25391079-25391099 1.0000 20 chr3:194397365-194397385 1.0000 20 chr1:22598488-22598508 1.0000 20 chr15:78610019-78610039 1.0000 20 chr8:8374900-8374920 1.0000 20 chr10:14004019-14004039 1.0000 20 chr1:114401858-114401878 1.0000 20 chr20:14862936-14862956 1.0000 20 chrX:134618721-134618741 1.0000 20 chr22:39858458-39858478 1.0000 20 chr16:88281164-88281184 1.0000 20 chr2:172015108-172015128 1.0000 20 chr6:31326278-31326298 1.0000 20 chr16:87972330-87972350 1.0000 20 chr2:9940673-9940693 1.0000 20 chr16:85137286-85137306 1.0000 20 chr16:29285031-29285051 1.0000 20 chr3:52057185-52057205 1.0000 20 chr10:26761493-26761513 1.0000 20 chr18:60318705-60318725 1.0000 20 chr1:25272576-25272596 1.0000 20 chr2:232650312-232650332 1.0000 20 chr1:25245029-25245049 1.0000 20 chr1:175450421-175450441 1.0000 20 chr9:37415430-37415450 1.0000 20 chr12:4222076-4222096 1.0000 20 chr14:69830843-69830863 1.0000 20 chr7:65015001-65015021 1.0000 20 chr6:6818520-6818540 1.0000 20 chr11:114476301-11447632 1.0000 20 chr22:39867792-39867812 1.0000 20 chr16:1357647-1357667 1.0000 20 chr5:59789402-59789422 1.0000 20 chr2:216593511-216593531 1.0000 20 chr1:16872478-16872498 1.0000 20 chr1:203279360-203279380 1.0000 20 chr3:61096401-61096421 1.0000 20 chr1:220454579-220454599 1.0000 20 chr6:41978829-41978849 1.0000 20 chr11:114481468-11448148 1.0000 20 chr6:15837637-15837657 1.0000 20 chr2:75906871-75906891 1.0000 20 chr18:5106911-5106931 1.0000 20 chr6:41990083-41990103 1.0000 20 chr2:184370819-184370839 1.0000 20 chr9:119809129-119809149 1.0000 20 chr7:36301228-36301248 1.0000 20 chr17:71871612-71871632 1.0000 20 chr14:64140222-64140242 1.0000 20 chr20:35473798-35473818 1.0000 20 chr21:36216944-36216964 1.0000 20 chr14:88471177-88471197 1.0000 20 chr10:98778541-98778561 1.0000 20 chr19:47139283-47139303 1.0000 20 chr8:117744896-117744916 1.0000 20 chr2:48123899-48123919 1.0000 20 chr16:81531621-81531641 1.0000 20 chr17:38770197-38770217 1.0000 20 chr3:53175301-53175321 1.0000 20 chr12:110561833-11056185 1.0000 20 chr16:29679770-29679790 1.0000 20 chr22:23270454-23270474 1.0000 20 chr1:148849026-148849046 1.0000 20 chr6:16764891-16764911 1.0000 20 chr4:185777484-185777504 1.0000 20 chr4:75893908-75893928 1.0000 20 chr2:222383264-222383284 1.0000 20 chr6:122994631-122994651 1.0000 20 chr4:156623168-156623188 1.0000 20 chr5:157024493-157024513 1.0000 20 chr2:43709242-43709262 1.0000 20 chr11:6490123-6490143 1.0000 20 chr2:25632109-25632129 1.0000 20 chr11:95188640-95188660 1.0000 20 chrX:790077-790097 1.0000 20 chr1:41810453-41810473 1.0000 20 chr7:65540431-65540451 1.0000 20 chr17:43461475-43461495 1.0000 20 chr10:87806839-87806859 1.0000 20 chr10:14700497-14700517 1.0000 20 chrX:94187419-94187439 1.0000 20 chr12:89915460-89915480 1.0000 20 chrX:1607847-1607867 1.0000 20 chr19:49735341-49735361 1.0000 20 chr10:5405063-5405083 1.0000 20 chr4:6259588-6259608 1.0000 20 chr9:4984333-4984353 1.0000 20 chr16:10873972-10873992 1.0000 20 chr8:26447043-26447063 1.0000 20 chr19:3172103-3172123 1.0000 20 chr12:108714549-10871456 1.0000 20 chrX:1610199-1610219 1.0000 20 chr22:40858389-40858409 1.0000 20 chr1:42167000-42167020 1.0000 20 chr2:158049673-158049693 1.0000 20 chr14:34510608-34510628 1.0000 20 chr10:12474600-12474620 1.0000 20 chr1:97850085-97850105 1.0000 20 chr12:102445535-10244555 1.0000 20 chr9:102354227-102354247 1.0000 20 chr17:65007814-65007834 1.0000 20 chr12:14817720-14817740 1.0000 20 chr5:100381561-100381581 1.0000 20 chr13:109261850-10926187 1.0000 20 chr8:29941223-29941243 1.0000 20 chr11:117778624-11777864 1.0000 20 chr14:68978575-68978595 1.0000 20 chr17:77015729-77015749 1.0000 20 chr1:85655056-85655076 1.0000 20 chr10:97577954-97577974 1.0000 20 chr7:126338761-126338781 1.0000 20 chr16:81498064-81498084 1.0000 20 chr13:37013394-37013414 1.0000 20 chr1:23501390-23501410 1.0000 20 chr19:45226751-45226771 1.0000 20 chr15:41793541-41793561 1.0000 20 chr7:95051208-95051228 1.0000 20 chr10:97961474-97961494 1.0000 20 chr3:152478000-152478020 1.0000 20 chr10:50399650-50399670 1.0000 20 chr5:149172291-149172311 1.0000 20 chr16:8614146-8614166 1.0000 20 chr3:98319295-98319315 1.0000 20 chr7:73914150-73914170 1.0000 20 chr2:78342514-78342534 1.0000 20 chr3:131526809-131526829 1.0000 20 chr14:50362309-50362329 1.0000 20 chr19:13869380-13869400 1.0000 20 chr18:3209953-3209973 1.0000 20 chr11:10676012-10676032 1.0000 20 chr14:102785391-10278541 1.0000 20 chr19:10198548-10198568 1.0000 20 chr2:36631644-36631664 1.0000 20 chr7:101191014-101191034 1.0000 20 chr1:18607657-18607677 1.0000 20 chr1:40498124-40498144 1.0000 20 chr6:71241104-71241124 1.0000 20 chr4:54562421-54562441 1.0000 20 chr2:231530213-231530233 1.0000 20 chr3:53194566-53194586 1.0000 20 chr17:37810377-37810397 1.0000 20 chr15:37234824-37234844 1.0000 20 chr14:75885670-75885690 1.0000 20 chr10:125154087-12515410 1.0000 20 chr5:55389998-55390018 1.0000 20 chr1:8744889-8744909 1.0000 20 chr6:28910049-28910069 1.0000 20 chr17:7961141-7961161 1.0000 20 chr13:42994630-42994650 1.0000 20 chr4:33188817-33188837 1.0000 20 chr5:55352975-55352995 1.0000 20 chr2:132792362-132792382 1.0000 20 chr3:191051475-191051495 1.0000 20 chr3:14967352-14967372 1.0000 20 chr14:105066892-10506691 1.0000 20 chr2:166748065-166748085 1.0000 20 chr2:56426250-56426270 1.0000 20 chr6:88457564-88457584 1.0000 20 chr3:171475614-171475634 1.0000 20 chr1:111774940-111774960 1.0000 20 chr11:120483261-12048328 1.0000 20 chr12:92950546-92950566 1.0000 20 chr7:114398900-114398920 1.0000 20 chr21:45138802-45138822 1.0000 20 chr1:229574722-229574742 1.0000 20 chr7:81904196-81904216 1.0000 20 chr2:54769292-54769312 1.0000 20 chr13:32458882-32458902 1.0000 20 chr9:119835968-119835988 1.0000 20 chr1:193000787-193000807 1.0000 20 chr6:134432420-134432440 1.0000 20 chr20:4979219-4979239 1.0000 20 chr6:37911588-37911608 1.0000 20 chr21:34601911-34601931 1.0000 20 chr22:37308922-37308942 1.0000 20 chr17:46933943-46933963 1.0000 20 chr9:136812125-136812145 1.0000 20 chr6:41753867-41753887 1.0000 20 chr12:53933529-53933549 1.0000 20 chr10:12065086-12065106 1.0000 20 chr2:43174178-43174198 1.0000 20 chr7:72142104-72142124 1.0000 20 chr4:22478952-22478972 1.0000 20 chr1:82711492-82711512 1.0000 20 chr1:246058948-246058968 1.0000 20 chr4:103427054-103427074 1.0000 20 chr18:23807649-23807669 1.0000 20 chr20:11465338-11465358 1.0000 20 chr11:114486410-11448643 1.0000 20 chr7:67714746-67714766 1.0000 20 chr10:3102957-3102977 1.0000 20 chr14:94858884-94858904 1.0000 20 chr11:114480310-11448033 1.0000 20 chr2:24799707-24799727 1.0000 20 chr3:72866288-72866308 1.0000 20 chr3:72684884-72684904 1.0000 20 chr1:67805425-67805445 1.0000 20 chr4:27704862-27704882 1.0000 20 chr6:21215154-21215174 1.0000 20 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/GM12878/inference_raw/MEME/RankLinear0.6_10_ZNF24/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/GM12878/fasta/RankLinear0.6_10/ZNF24.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 5000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 5000 norand= no csites= 1000 Letter frequencies in dataset: A 0.315 C 0.183 G 0.201 T 0.3 Background letter frequencies (from file dataset with add-one prior applied): A 0.315 C 0.183 G 0.201 T 0.3 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF AATGAATG MEME-1 width = 8 sites = 63 llr = 537 E-value = 3.2e-084 ******************************************************************************** -------------------------------------------------------------------------------- Motif AATGAATG MEME-1 Description -------------------------------------------------------------------------------- Simplified A a8::a9:1 pos.-specific C :::::::: probability G :2:a:1:9 matrix T ::a:::a: bits 2.4 2.2 * 2.0 * 1.7 *** Relative 1.5 * *** ** Entropy 1.2 * ****** (12.3 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AATGAATG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATGAATG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3:72684884-72684904 13 3.58e-05 tgaatgaatg aatgaatg chr14:94858884-94858904 11 3.58e-05 TCATTTAATG AATGAATG AA chr7:67714746-67714766 8 3.58e-05 atgagtg aatgaatg agtga chr9:136812125-136812145 13 3.58e-05 tgaatgaaca aatgaatg chr1:229574722-229574742 1 3.58e-05 . aatgaatg aatgatatat chr3:191051475-191051495 3 3.58e-05 ta aatgaatg agtgaatgaa chr19:13869380-13869400 3 3.58e-05 ct aatgaatg aacaaatgaa chr14:50362309-50362329 3 3.58e-05 TG AATGAATG ATGTGTAGAC chr2:78342514-78342534 1 3.58e-05 . aatgaatg gcaaagagaa chr7:73914150-73914170 1 3.58e-05 . aatgaatg tgcacaccaa chr7:126338761-126338781 12 3.58e-05 GCAACAAAAC AATGAATG A chr11:117778624-11777864 3 3.58e-05 tg aatgaatg aaGTCTTCTT chr10:12474600-12474620 2 3.58e-05 g aatgaatg agtgaataga chr16:10873972-10873992 3 3.58e-05 tg aatgaatg aataaaATAA chr9:4984333-4984353 6 3.58e-05 gaatg aatgaatG AGGCCCT chr2:222383264-222383284 10 3.58e-05 ATACGAATG AATGAATG AAT chr6:15837637-15837657 13 3.58e-05 tgaatgaatg aatgaatg chr6:41978829-41978849 10 3.58e-05 gaatgaatg aatgaatg aat chr16:1357647-1357667 11 3.58e-05 ggagggaatg aATGAATg ag chr14:69830843-69830863 6 3.58e-05 tcttg aatgaatg aaCAAGT chr2:232650312-232650332 8 3.58e-05 ttgaata aatgaatG AGTTG chr2:172015108-172015128 11 3.58e-05 tgaatgaatg aatgaatg aa chrX:1608462-1608482 2 3.58e-05 G AATGAATG ATACCCAGAT chr1:200860061-200860081 2 3.58e-05 G AATGAATG GATGAACGGG chr4:703245-703265 9 3.58e-05 catgagca aatgaatg aaag chr19:4197896-4197916 1 3.58e-05 . aatgaatg aacgagtgaa chr5:1035339-1035359 9 3.58e-05 agtgagtt aatgaatg agtg chr3:53763904-53763924 10 3.58e-05 gagtgaagg aatGAATG AGT chr19:17593869-17593889 11 3.58e-05 tgaaggaggg aatgaatg aa chr11:1223250-1223270 5 3.58e-05 agtg aatgaatg aatgagcg chrX:1609685-1609705 1 3.58e-05 . AATGAATG ATACCCAGAT chr6:11381735-11381755 12 3.58e-05 ggaagaaatg aatgaatg G chr1:15068969-15068989 9 3.58e-05 CGTGCTTG AATGAATG AAGG chrX:1609276-1609296 11 3.58e-05 ATGTGGAGGG AATGAATG AA chr19:3140753-3140773 2 3.58e-05 g aatgaatg aatgaatCAT chr19:4232844-4232864 2 3.58e-05 g aatgaatg CTGACATCCC chr1:18929139-18929159 13 3.58e-05 tgcatgagtg aatgaatg chr1:18607657-18607677 11 5.86e-05 tgaacaggtg agtgaatg aa chr16:8614146-8614166 12 5.86e-05 tgaatgagtt agtgaatg a chr14:88471177-88471197 11 5.86e-05 tggcatgatg agtgaatg aa chr1:25272576-25272596 5 5.86e-05 gctg agtgaatg aacgaatg chr4:3608339-3608359 3 5.86e-05 tg agtgaatg agtgagtgaa chr9:139042763-139042783 10 5.86e-05 gagtgaatg agtgaatg aat chr20:62175298-62175318 4 5.86e-05 acg agtgaatg agatgaatg chr22:50336307-50336327 8 5.86e-05 gtgagtg agtgaatg agtaa chr16:29285031-29285051 4 8.15e-05 gcg aatgagtg gatgagtga chr19:841500-841520 3 8.15e-05 tg aatgagtg aacgaatgaa chr7:81904196-81904216 3 1.38e-04 tg aatgaata atgGCCAATA chr14:75885670-75885690 1 1.38e-04 . aatgaata aaAATCCAAC chr9:102354227-102354247 2 1.38e-04 g aatgaatA GGATAATTCA chr1:25391079-25391099 2 1.38e-04 g aatgaatA TAATCAGACA chr16:88281164-88281184 5 1.74e-04 actg agtgagtg actgagtg chr15:37234824-37234844 11 2.08e-04 GAATCAATGC ATTGAATG AA chr18:3209953-3209973 10 2.08e-04 taaatattt attgaatg aat chr2:75906871-75906891 1 2.62e-04 . AATGAATT TATACCGGTT chr13:37013394-37013414 5 2.97e-04 TTAC AGTGAATA AACTACTT chr2:43174178-43174198 10 3.83e-04 TTGCTCTGT TATGAATG ACT chr8:8374900-8374920 1 3.83e-04 . aatgaaAG AGCAAATTTA chrX:1610199-1610219 13 5.06e-04 ATGTGGGGGG AATTAATG chr2:231530213-231530233 1 5.20e-04 . aatgagcg aACCACAAGA chr6:37911588-37911608 2 5.76e-04 T AATGAGTT TCAAAGTAAA chr22:40858389-40858409 9 5.76e-04 CAGCAGAC AATGAGTT AAAG chr10:14004019-14004039 3 6.56e-04 ta aatgaaCA AAAACACACg -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATGAATG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:72684884-72684904 3.6e-05 12_[+1] chr14:94858884-94858904 3.6e-05 10_[+1]_2 chr7:67714746-67714766 3.6e-05 7_[+1]_5 chr9:136812125-136812145 3.6e-05 12_[+1] chr1:229574722-229574742 3.6e-05 [+1]_12 chr3:191051475-191051495 3.6e-05 2_[+1]_10 chr19:13869380-13869400 3.6e-05 2_[+1]_10 chr14:50362309-50362329 3.6e-05 2_[+1]_10 chr2:78342514-78342534 3.6e-05 [+1]_12 chr7:73914150-73914170 3.6e-05 [+1]_12 chr7:126338761-126338781 3.6e-05 11_[+1]_1 chr11:117778624-11777864 3.6e-05 2_[+1]_10 chr10:12474600-12474620 3.6e-05 1_[+1]_11 chr16:10873972-10873992 3.6e-05 2_[+1]_10 chr9:4984333-4984353 3.6e-05 5_[+1]_7 chr2:222383264-222383284 3.6e-05 9_[+1]_3 chr6:15837637-15837657 3.6e-05 12_[+1] chr6:41978829-41978849 3.6e-05 9_[+1]_3 chr16:1357647-1357667 3.6e-05 10_[+1]_2 chr14:69830843-69830863 3.6e-05 5_[+1]_7 chr2:232650312-232650332 3.6e-05 7_[+1]_5 chr2:172015108-172015128 3.6e-05 10_[+1]_2 chrX:1608462-1608482 3.6e-05 1_[+1]_11 chr1:200860061-200860081 3.6e-05 1_[+1]_11 chr4:703245-703265 3.6e-05 8_[+1]_4 chr19:4197896-4197916 3.6e-05 [+1]_12 chr5:1035339-1035359 3.6e-05 8_[+1]_4 chr3:53763904-53763924 3.6e-05 9_[+1]_3 chr19:17593869-17593889 3.6e-05 10_[+1]_2 chr11:1223250-1223270 3.6e-05 4_[+1]_8 chrX:1609685-1609705 3.6e-05 [+1]_12 chr6:11381735-11381755 3.6e-05 11_[+1]_1 chr1:15068969-15068989 3.6e-05 8_[+1]_4 chrX:1609276-1609296 3.6e-05 10_[+1]_2 chr19:3140753-3140773 3.6e-05 1_[+1]_11 chr19:4232844-4232864 3.6e-05 1_[+1]_11 chr1:18929139-18929159 3.6e-05 12_[+1] chr1:18607657-18607677 5.9e-05 10_[+1]_2 chr16:8614146-8614166 5.9e-05 11_[+1]_1 chr14:88471177-88471197 5.9e-05 10_[+1]_2 chr1:25272576-25272596 5.9e-05 4_[+1]_8 chr4:3608339-3608359 5.9e-05 2_[+1]_10 chr9:139042763-139042783 5.9e-05 9_[+1]_3 chr20:62175298-62175318 5.9e-05 3_[+1]_9 chr22:50336307-50336327 5.9e-05 7_[+1]_5 chr16:29285031-29285051 8.1e-05 3_[+1]_9 chr19:841500-841520 8.1e-05 2_[+1]_10 chr7:81904196-81904216 0.00014 2_[+1]_10 chr14:75885670-75885690 0.00014 [+1]_12 chr9:102354227-102354247 0.00014 1_[+1]_11 chr1:25391079-25391099 0.00014 1_[+1]_11 chr16:88281164-88281184 0.00017 4_[+1]_8 chr15:37234824-37234844 0.00021 10_[+1]_2 chr18:3209953-3209973 0.00021 9_[+1]_3 chr2:75906871-75906891 0.00026 [+1]_12 chr13:37013394-37013414 0.0003 4_[+1]_8 chr2:43174178-43174198 0.00038 9_[+1]_3 chr8:8374900-8374920 0.00038 [+1]_12 chrX:1610199-1610219 0.00051 12_[+1] chr2:231530213-231530233 0.00052 [+1]_12 chr6:37911588-37911608 0.00058 1_[+1]_11 chr22:40858389-40858409 0.00058 8_[+1]_4 chr10:14004019-14004039 0.00066 2_[+1]_10 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATGAATG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AATGAATG width=8 seqs=63 chr3:72684884-72684904 ( 13) AATGAATG 1 chr14:94858884-94858904 ( 11) AATGAATG 1 chr7:67714746-67714766 ( 8) AATGAATG 1 chr9:136812125-136812145 ( 13) AATGAATG 1 chr1:229574722-229574742 ( 1) AATGAATG 1 chr3:191051475-191051495 ( 3) AATGAATG 1 chr19:13869380-13869400 ( 3) AATGAATG 1 chr14:50362309-50362329 ( 3) AATGAATG 1 chr2:78342514-78342534 ( 1) AATGAATG 1 chr7:73914150-73914170 ( 1) AATGAATG 1 chr7:126338761-126338781 ( 12) AATGAATG 1 chr11:117778624-11777864 ( 3) AATGAATG 1 chr10:12474600-12474620 ( 2) AATGAATG 1 chr16:10873972-10873992 ( 3) AATGAATG 1 chr9:4984333-4984353 ( 6) AATGAATG 1 chr2:222383264-222383284 ( 10) AATGAATG 1 chr6:15837637-15837657 ( 13) AATGAATG 1 chr6:41978829-41978849 ( 10) AATGAATG 1 chr16:1357647-1357667 ( 11) AATGAATG 1 chr14:69830843-69830863 ( 6) AATGAATG 1 chr2:232650312-232650332 ( 8) AATGAATG 1 chr2:172015108-172015128 ( 11) AATGAATG 1 chrX:1608462-1608482 ( 2) AATGAATG 1 chr1:200860061-200860081 ( 2) AATGAATG 1 chr4:703245-703265 ( 9) AATGAATG 1 chr19:4197896-4197916 ( 1) AATGAATG 1 chr5:1035339-1035359 ( 9) AATGAATG 1 chr3:53763904-53763924 ( 10) AATGAATG 1 chr19:17593869-17593889 ( 11) AATGAATG 1 chr11:1223250-1223270 ( 5) AATGAATG 1 chrX:1609685-1609705 ( 1) AATGAATG 1 chr6:11381735-11381755 ( 12) AATGAATG 1 chr1:15068969-15068989 ( 9) AATGAATG 1 chrX:1609276-1609296 ( 11) AATGAATG 1 chr19:3140753-3140773 ( 2) AATGAATG 1 chr19:4232844-4232864 ( 2) AATGAATG 1 chr1:18929139-18929159 ( 13) AATGAATG 1 chr1:18607657-18607677 ( 11) AGTGAATG 1 chr16:8614146-8614166 ( 12) AGTGAATG 1 chr14:88471177-88471197 ( 11) AGTGAATG 1 chr1:25272576-25272596 ( 5) AGTGAATG 1 chr4:3608339-3608359 ( 3) AGTGAATG 1 chr9:139042763-139042783 ( 10) AGTGAATG 1 chr20:62175298-62175318 ( 4) AGTGAATG 1 chr22:50336307-50336327 ( 8) AGTGAATG 1 chr16:29285031-29285051 ( 4) AATGAGTG 1 chr19:841500-841520 ( 3) AATGAGTG 1 chr7:81904196-81904216 ( 3) AATGAATA 1 chr14:75885670-75885690 ( 1) AATGAATA 1 chr9:102354227-102354247 ( 2) AATGAATA 1 chr1:25391079-25391099 ( 2) AATGAATA 1 chr16:88281164-88281184 ( 5) AGTGAGTG 1 chr15:37234824-37234844 ( 11) ATTGAATG 1 chr18:3209953-3209973 ( 10) ATTGAATG 1 chr2:75906871-75906891 ( 1) AATGAATT 1 chr13:37013394-37013414 ( 5) AGTGAATA 1 chr2:43174178-43174198 ( 10) TATGAATG 1 chr8:8374900-8374920 ( 1) AATGAAAG 1 chrX:1610199-1610219 ( 13) AATTAATG 1 chr2:231530213-231530233 ( 1) AATGAGCG 1 chr6:37911588-37911608 ( 2) AATGAGTT 1 chr22:40858389-40858409 ( 9) AATGAGTT 1 chr10:14004019-14004039 ( 3) AATGAACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATGAATG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 6.39367 E= 3.2e-084 164 -1262 -1262 -424 136 -1262 -34 -324 -1262 -1262 -1262 174 -1262 -1262 229 -424 167 -1262 -1262 -1262 152 -1262 -108 -1262 -431 -253 -1262 166 -172 -1262 209 -266 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATGAATG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 63 E= 3.2e-084 0.984127 0.000000 0.000000 0.015873 0.809524 0.000000 0.158730 0.031746 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.984127 0.015873 1.000000 0.000000 0.000000 0.000000 0.904762 0.000000 0.095238 0.000000 0.015873 0.031746 0.000000 0.952381 0.095238 0.000000 0.857143 0.047619 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATGAATG MEME-1 regular expression -------------------------------------------------------------------------------- AATGAATG -------------------------------------------------------------------------------- Time 1.89 secs. ******************************************************************************** ******************************************************************************** MOTIF TTCATTCA MEME-2 width = 8 sites = 58 llr = 457 E-value = 2.0e-057 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTCATTCA MEME-2 Description -------------------------------------------------------------------------------- Simplified A :1:a:::8 pos.-specific C 1:a:2:91 probability G ::::1::1 matrix T 99::7a1: bits 2.4 * 2.2 * 2.0 * 1.7 * ** Relative 1.5 ** ** Entropy 1.2 * ** ** (11.4 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTCATTCA consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCATTCA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr22:37308922-37308942 9 2.69e-05 ctcattca ttcattca ttca chr1:193000787-193000807 13 2.69e-05 CATTCattca ttcattca chr13:32458882-32458902 2 2.69e-05 C ttcattca ttcattcatt chr4:54562421-54562441 1 2.69e-05 . ttcattca tttattcatt chr7:101191014-101191034 5 2.69e-05 ctga ttcattca ttctttta chr5:149172291-149172311 12 2.69e-05 CGTAGTTGTa ttcattca t chr10:97577954-97577974 3 2.69e-05 Aa ttcattca ttcattcatt chr17:77015729-77015749 4 2.69e-05 TCA TTCATTCA TATGTTGAC chr12:89915460-89915480 10 2.69e-05 AGCcattca ttcattca ttc chrX:790077-790097 8 2.69e-05 tcattca ttcattca caagc chr2:25632109-25632129 8 2.69e-05 tcattca ttcattca ctcat chr4:156623168-156623188 1 2.69e-05 . ttcattca ttcattcatt chr4:75893908-75893928 13 2.69e-05 gcatttttta ttcattca chr22:23270454-23270474 11 2.69e-05 CTAAGGGCTT ttcattca tt chr17:38770197-38770217 13 2.69e-05 TTGGTattca ttcattca chr16:81531621-81531641 11 2.69e-05 TGTTGGTCTG ttcattca tt chr8:117744896-117744916 1 2.69e-05 . ttcattca ttcattcatt chr19:47139283-47139303 11 2.69e-05 cgcagaagAa ttcattca ct chr10:98778541-98778561 13 2.69e-05 GTTACTTGTT ttcattca chr17:71871612-71871632 11 2.69e-05 AGCTGTAAca ttcattca tt chr1:203279360-203279380 13 2.69e-05 AGtcgttcat ttcattca chr5:59789402-59789422 12 2.69e-05 TACACAAtca ttcattca t chr10:26761493-26761513 10 2.69e-05 TTTGTttca ttcattca ttc chr3:52057185-52057205 12 2.69e-05 TCCTTattca ttcattca t chr3:194397365-194397385 1 2.69e-05 . ttcattca ctcactcatc chr9:136599482-136599502 12 2.69e-05 cactcattca ttcattca c chr22:39867792-39867812 1 4.33e-05 . TTCACTCA TTCTTTCACT chr1:22598488-22598508 8 4.33e-05 tcattta ttcactca ccact chr9:139475797-139475817 5 4.33e-05 ctca ttcactca ctcattca chr16:829076-829096 12 4.33e-05 ttcactcatt ttcactca c chr9:139474192-139474212 8 4.33e-05 tcactca ttcactca ctcat chr9:135865668-135865688 13 4.33e-05 cattcatttg ttcactca chr1:8744889-8744909 3 5.98e-05 ta ctcattca tccattcatt chr16:85137286-85137306 7 7.54e-05 TGACGC TTCATTCC CTTGTG chr16:22960330-22960350 12 7.54e-05 ATGGAGttcg ttcattcc t chr10:3102957-3102977 2 8.54e-05 a ctcactca ttactcattt chr16:87972330-87972350 7 8.54e-05 cattct ctcactca gtcaat chr21:34601911-34601931 3 1.41e-04 Ca ttcagtca gtcaacacat chr4:1170583-1170603 1 1.41e-04 . tacattca tgcaatcatc chr12:108714549-10871456 4 1.58e-04 TCA TTCATTCG TTCTACAAG chr17:75662078-75662098 3 1.58e-04 ca ttcattcg ctcttcattc chr1:111774940-111774960 10 2.03e-04 AAAAATGTC ttcattta ttc chr20:14862936-14862956 1 2.96e-04 . TGCACTCA CTGAATTTTT chr5:172192063-172192083 4 3.62e-04 AGC CACATTCA AGGAAAAGG chr5:100381561-100381581 3 4.71e-04 CA TTCATTAA CAGAAACACA chr7:36301228-36301248 3 4.71e-04 TT TTCATTAA TGATTCATTC chr1:16533761-16533781 10 5.39e-04 TTTCCTCGG TTCCCTCA AGA chr20:61688980-61689000 8 5.39e-04 tcattca cacactca tttgt chr2:132792362-132792382 7 5.71e-04 catttc ttcatttc atcatt chr1:148849026-148849046 10 5.71e-04 tatcatttc ttcatttc acc chr7:65015001-65015021 13 5.71e-04 atttgatctt ttcatttc chrX:1607847-1607867 12 6.11e-04 GCATCCAGGG TACACTCC T chr14:64140222-64140242 12 6.11e-04 GATCAGGTGC TACAGTCA T chr21:36216944-36216964 4 8.18e-04 ATG CTCATCCA GCAGTGTGG chr10:87806839-87806859 7 9.66e-04 TAGCTG CTCATTCT CAAAAC chr22:20105538-20105558 8 1.06e-03 AGTACGG TGCATTTA TTCTT chr6:31326278-31326298 4 1.10e-03 TTC TTCACTTG CAatggttg chr20:35473798-35473818 9 1.19e-03 CCCTTCAC CACAGTCA ATTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCATTCA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr22:37308922-37308942 2.7e-05 8_[+2]_4 chr1:193000787-193000807 2.7e-05 12_[+2] chr13:32458882-32458902 2.7e-05 1_[+2]_11 chr4:54562421-54562441 2.7e-05 [+2]_12 chr7:101191014-101191034 2.7e-05 4_[+2]_8 chr5:149172291-149172311 2.7e-05 11_[+2]_1 chr10:97577954-97577974 2.7e-05 2_[+2]_10 chr17:77015729-77015749 2.7e-05 3_[+2]_9 chr12:89915460-89915480 2.7e-05 9_[+2]_3 chrX:790077-790097 2.7e-05 7_[+2]_5 chr2:25632109-25632129 2.7e-05 7_[+2]_5 chr4:156623168-156623188 2.7e-05 [+2]_12 chr4:75893908-75893928 2.7e-05 12_[+2] chr22:23270454-23270474 2.7e-05 10_[+2]_2 chr17:38770197-38770217 2.7e-05 12_[+2] chr16:81531621-81531641 2.7e-05 10_[+2]_2 chr8:117744896-117744916 2.7e-05 [+2]_12 chr19:47139283-47139303 2.7e-05 10_[+2]_2 chr10:98778541-98778561 2.7e-05 12_[+2] chr17:71871612-71871632 2.7e-05 10_[+2]_2 chr1:203279360-203279380 2.7e-05 12_[+2] chr5:59789402-59789422 2.7e-05 11_[+2]_1 chr10:26761493-26761513 2.7e-05 9_[+2]_3 chr3:52057185-52057205 2.7e-05 11_[+2]_1 chr3:194397365-194397385 2.7e-05 [+2]_12 chr9:136599482-136599502 2.7e-05 11_[+2]_1 chr22:39867792-39867812 4.3e-05 [+2]_12 chr1:22598488-22598508 4.3e-05 7_[+2]_5 chr9:139475797-139475817 4.3e-05 4_[+2]_8 chr16:829076-829096 4.3e-05 11_[+2]_1 chr9:139474192-139474212 4.3e-05 7_[+2]_5 chr9:135865668-135865688 4.3e-05 12_[+2] chr1:8744889-8744909 6e-05 2_[+2]_10 chr16:85137286-85137306 7.5e-05 6_[+2]_6 chr16:22960330-22960350 7.5e-05 11_[+2]_1 chr10:3102957-3102977 8.5e-05 1_[+2]_11 chr16:87972330-87972350 8.5e-05 6_[+2]_6 chr21:34601911-34601931 0.00014 2_[+2]_10 chr4:1170583-1170603 0.00014 [+2]_12 chr12:108714549-10871456 0.00016 3_[+2]_9 chr17:75662078-75662098 0.00016 2_[+2]_10 chr1:111774940-111774960 0.0002 9_[+2]_3 chr20:14862936-14862956 0.0003 [+2]_12 chr5:172192063-172192083 0.00036 3_[+2]_9 chr5:100381561-100381581 0.00047 2_[+2]_10 chr7:36301228-36301248 0.00047 2_[+2]_10 chr1:16533761-16533781 0.00054 9_[+2]_3 chr20:61688980-61689000 0.00054 7_[+2]_5 chr2:132792362-132792382 0.00057 6_[+2]_6 chr1:148849026-148849046 0.00057 9_[+2]_3 chr7:65015001-65015021 0.00057 12_[+2] chrX:1607847-1607867 0.00061 11_[+2]_1 chr14:64140222-64140242 0.00061 11_[+2]_1 chr21:36216944-36216964 0.00082 3_[+2]_9 chr10:87806839-87806859 0.00097 6_[+2]_6 chr22:20105538-20105558 0.0011 7_[+2]_5 chr6:31326278-31326298 0.0011 3_[+2]_9 chr20:35473798-35473818 0.0012 8_[+2]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCATTCA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTCATTCA width=8 seqs=58 chr22:37308922-37308942 ( 9) TTCATTCA 1 chr1:193000787-193000807 ( 13) TTCATTCA 1 chr13:32458882-32458902 ( 2) TTCATTCA 1 chr4:54562421-54562441 ( 1) TTCATTCA 1 chr7:101191014-101191034 ( 5) TTCATTCA 1 chr5:149172291-149172311 ( 12) TTCATTCA 1 chr10:97577954-97577974 ( 3) TTCATTCA 1 chr17:77015729-77015749 ( 4) TTCATTCA 1 chr12:89915460-89915480 ( 10) TTCATTCA 1 chrX:790077-790097 ( 8) TTCATTCA 1 chr2:25632109-25632129 ( 8) TTCATTCA 1 chr4:156623168-156623188 ( 1) TTCATTCA 1 chr4:75893908-75893928 ( 13) TTCATTCA 1 chr22:23270454-23270474 ( 11) TTCATTCA 1 chr17:38770197-38770217 ( 13) TTCATTCA 1 chr16:81531621-81531641 ( 11) TTCATTCA 1 chr8:117744896-117744916 ( 1) TTCATTCA 1 chr19:47139283-47139303 ( 11) TTCATTCA 1 chr10:98778541-98778561 ( 13) TTCATTCA 1 chr17:71871612-71871632 ( 11) TTCATTCA 1 chr1:203279360-203279380 ( 13) TTCATTCA 1 chr5:59789402-59789422 ( 12) TTCATTCA 1 chr10:26761493-26761513 ( 10) TTCATTCA 1 chr3:52057185-52057205 ( 12) TTCATTCA 1 chr3:194397365-194397385 ( 1) TTCATTCA 1 chr9:136599482-136599502 ( 12) TTCATTCA 1 chr22:39867792-39867812 ( 1) TTCACTCA 1 chr1:22598488-22598508 ( 8) TTCACTCA 1 chr9:139475797-139475817 ( 5) TTCACTCA 1 chr16:829076-829096 ( 12) TTCACTCA 1 chr9:139474192-139474212 ( 8) TTCACTCA 1 chr9:135865668-135865688 ( 13) TTCACTCA 1 chr1:8744889-8744909 ( 3) CTCATTCA 1 chr16:85137286-85137306 ( 7) TTCATTCC 1 chr16:22960330-22960350 ( 12) TTCATTCC 1 chr10:3102957-3102977 ( 2) CTCACTCA 1 chr16:87972330-87972350 ( 7) CTCACTCA 1 chr21:34601911-34601931 ( 3) TTCAGTCA 1 chr4:1170583-1170603 ( 1) TACATTCA 1 chr12:108714549-10871456 ( 4) TTCATTCG 1 chr17:75662078-75662098 ( 3) TTCATTCG 1 chr1:111774940-111774960 ( 10) TTCATTTA 1 chr20:14862936-14862956 ( 1) TGCACTCA 1 chr5:172192063-172192083 ( 4) CACATTCA 1 chr5:100381561-100381581 ( 3) TTCATTAA 1 chr7:36301228-36301248 ( 3) TTCATTAA 1 chr1:16533761-16533781 ( 10) TTCCCTCA 1 chr20:61688980-61689000 ( 8) CACACTCA 1 chr2:132792362-132792382 ( 7) TTCATTTC 1 chr1:148849026-148849046 ( 10) TTCATTTC 1 chr7:65015001-65015021 ( 13) TTCATTTC 1 chrX:1607847-1607867 ( 12) TACACTCC 1 chr14:64140222-64140242 ( 12) TACAGTCA 1 chr21:36216944-36216964 ( 4) CTCATCCA 1 chr10:87806839-87806859 ( 7) CTCATTCT 1 chr22:20105538-20105558 ( 8) TGCATTTA 1 chr6:31326278-31326298 ( 4) TTCACTTG 1 chr20:35473798-35473818 ( 9) CACAGTCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCATTCA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 6.43238 E= 2.0e-057 -1250 -41 -1250 152 -161 -1250 -255 152 -1250 245 -1250 -1250 164 -341 -1250 -1250 -1250 29 -196 127 -1250 -341 -1250 171 -319 223 -1250 -154 139 -82 -196 -412 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCATTCA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 58 E= 2.0e-057 0.000000 0.137931 0.000000 0.862069 0.103448 0.000000 0.034483 0.862069 0.000000 1.000000 0.000000 0.000000 0.982759 0.017241 0.000000 0.000000 0.000000 0.224138 0.051724 0.724138 0.000000 0.017241 0.000000 0.982759 0.034483 0.862069 0.000000 0.103448 0.827586 0.103448 0.051724 0.017241 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTCATTCA MEME-2 regular expression -------------------------------------------------------------------------------- TTCA[TC]TCA -------------------------------------------------------------------------------- Time 3.42 secs. ******************************************************************************** ******************************************************************************** MOTIF YTCATTCA MEME-3 width = 8 sites = 16 llr = 138 E-value = 2.7e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif YTCATTCA MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::9:::a pos.-specific C 419:1:9: probability G :::::::: matrix T 69119a1: bits 2.4 2.2 2.0 * 1.7 * *** Relative 1.5 ** *** Entropy 1.2 ******* (12.4 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTCATTCA consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTCATTCA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr22:37308922-37308942 1 1.64e-05 . ctcattca ttcattcatt chr9:139475797-139475817 13 1.64e-05 cattcactca ctcattca chr9:136599482-136599502 4 1.64e-05 tca ctcattca ttcattcac chr9:135865668-135865688 1 1.64e-05 . ctcattca tttgttcact chr1:193000787-193000807 5 4.33e-05 GCCA TTCattca ttcattca chr13:32458882-32458902 10 4.33e-05 Cttcattca ttcattca ttc chr10:97577954-97577974 11 4.33e-05 Aattcattca ttcattca tt chr4:156623168-156623188 13 4.33e-05 cattcattca ttcattca chr8:117744896-117744916 13 4.33e-05 cattcattca ttcattca chr3:194397365-194397385 9 5.33e-05 ttcattca ctcactca tcca chr16:829076-829096 2 6.98e-05 a ttcactca ttttcactca chr3:52057185-52057205 4 1.07e-04 CTC CTTattca ttcattcat chr1:8744889-8744909 11 1.23e-04 tactcattca tccattca tt chr4:54562421-54562441 9 1.83e-04 ttcattca tttattca ttAA chr22:39867792-39867812 9 2.09e-04 TTCACTCA TTCTTTCA CTGG chr10:3102957-3102977 13 2.35e-04 tcactcatta ctcattta -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTCATTCA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr22:37308922-37308942 1.6e-05 [+3]_12 chr9:139475797-139475817 1.6e-05 12_[+3] chr9:136599482-136599502 1.6e-05 3_[+3]_9 chr9:135865668-135865688 1.6e-05 [+3]_12 chr1:193000787-193000807 4.3e-05 4_[+3]_8 chr13:32458882-32458902 4.3e-05 9_[+3]_3 chr10:97577954-97577974 4.3e-05 10_[+3]_2 chr4:156623168-156623188 4.3e-05 12_[+3] chr8:117744896-117744916 4.3e-05 12_[+3] chr3:194397365-194397385 5.3e-05 8_[+3]_4 chr16:829076-829096 7e-05 1_[+3]_11 chr3:52057185-52057205 0.00011 3_[+3]_9 chr1:8744889-8744909 0.00012 10_[+3]_2 chr4:54562421-54562441 0.00018 8_[+3]_4 chr22:39867792-39867812 0.00021 8_[+3]_4 chr10:3102957-3102977 0.00024 12_[+3] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTCATTCA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YTCATTCA width=8 seqs=16 chr22:37308922-37308942 ( 1) CTCATTCA 1 chr9:139475797-139475817 ( 13) CTCATTCA 1 chr9:136599482-136599502 ( 4) CTCATTCA 1 chr9:135865668-135865688 ( 1) CTCATTCA 1 chr1:193000787-193000807 ( 5) TTCATTCA 1 chr13:32458882-32458902 ( 10) TTCATTCA 1 chr10:97577954-97577974 ( 11) TTCATTCA 1 chr4:156623168-156623188 ( 13) TTCATTCA 1 chr8:117744896-117744916 ( 13) TTCATTCA 1 chr3:194397365-194397385 ( 9) CTCACTCA 1 chr16:829076-829096 ( 2) TTCACTCA 1 chr3:52057185-52057205 ( 4) CTTATTCA 1 chr1:8744889-8744909 ( 11) TCCATTCA 1 chr4:54562421-54562441 ( 9) TTTATTCA 1 chr22:39867792-39867812 ( 9) TTCTTTCA 1 chr10:3102957-3102977 ( 13) CTCATTTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTCATTCA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 8.98531 E= 2.7e-004 -1064 125 -1064 90 -1064 -155 -1064 164 -1064 225 -1064 -126 157 -1064 -1064 -226 -1064 -55 -1064 154 -1064 -1064 -1064 173 -1064 235 -1064 -226 167 -1064 -1064 -1064 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTCATTCA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 2.7e-004 0.000000 0.437500 0.000000 0.562500 0.000000 0.062500 0.000000 0.937500 0.000000 0.875000 0.000000 0.125000 0.937500 0.000000 0.000000 0.062500 0.000000 0.125000 0.000000 0.875000 0.000000 0.000000 0.000000 1.000000 0.000000 0.937500 0.000000 0.062500 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTCATTCA MEME-3 regular expression -------------------------------------------------------------------------------- [TC]TCATTCA -------------------------------------------------------------------------------- Time 6.36 secs. ******************************************************************************** ******************************************************************************** MOTIF AATGARTG MEME-4 width = 8 sites = 25 llr = 176 E-value = 2.5e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif AATGARTG MEME-4 Description -------------------------------------------------------------------------------- Simplified A 87:1a6:: pos.-specific C ::1::::: probability G 1219:41a matrix T ::8:::8: bits 2.4 2.2 2.0 * 1.7 ** * Relative 1.5 ** * Entropy 1.2 ** * (10.2 bits) 1.0 * ****** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AATGAATG consensus G G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATGARTG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3:72684884-72684904 1 5.86e-05 . aatgaatg aatgaatgaa chr9:136812125-136812145 1 5.86e-05 . aatgaatg aacaaatgaa chr6:15837637-15837657 1 5.86e-05 . aatgaatg aatgaatgaa chr6:41978829-41978849 2 5.86e-05 g aatgaatg aatgaatgaa chr2:172015108-172015128 3 5.86e-05 tg aatgaatg aatgaatgaa chr4:3608339-3608359 11 7.32e-05 tgagtgaatg agtgagtg aa chr3:191051475-191051495 11 9.61e-05 taaatgaatg agtgaatg aa chr19:4197896-4197916 13 9.61e-05 tgaatgaacg agtgaatg chr9:139042763-139042783 2 9.61e-05 g agtgaatg agtgaatgaa chr12:14817720-14817740 13 1.41e-04 acagagtata gatgagtg chr16:29285031-29285051 12 1.41e-04 cgaatgagtg gatgagtg a chr20:62175298-62175318 13 2.12e-04 gagtgaatga gatgaatg chr1:25272576-25272596 13 2.48e-04 tgagtgaatg aacgaatg chr19:841500-841520 11 2.48e-04 tgaatgagtg aacgaatg aa chr16:1357647-1357667 3 3.22e-04 gg agggaatg aATGAATgag chr3:53763904-53763924 2 3.22e-04 g agtgaagg aatGAATGAG chr16:88281164-88281184 13 3.35e-04 tgagtgagtg actgagtg chr11:1223250-1223270 13 4.06e-04 tgaatgaatg aatgagcg chr1:18929139-18929159 5 4.06e-04 catg catgagtg aatgaatg chr11:114480310-11448033 3 4.84e-04 AT AATAAGTG TTGCCTCGTG chr11:114481468-11448148 2 4.84e-04 T AATAAGTG TTGCCTTGTC chr8:26447043-26447063 10 5.91e-04 TAGTGTCAC AAGGAGGG AGG chr19:17593869-17593889 3 5.91e-04 tg aaggaggg aatgaatgaa chr15:37234824-37234844 2 6.91e-04 G AATCAATG CATTGAATGA chr19:3140753-3140773 10 7.41e-04 gaatgaatg aatgaatC ATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATGARTG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:72684884-72684904 5.9e-05 [+4]_12 chr9:136812125-136812145 5.9e-05 [+4]_12 chr6:15837637-15837657 5.9e-05 [+4]_12 chr6:41978829-41978849 5.9e-05 1_[+4]_11 chr2:172015108-172015128 5.9e-05 2_[+4]_10 chr4:3608339-3608359 7.3e-05 10_[+4]_2 chr3:191051475-191051495 9.6e-05 10_[+4]_2 chr19:4197896-4197916 9.6e-05 12_[+4] chr9:139042763-139042783 9.6e-05 1_[+4]_11 chr12:14817720-14817740 0.00014 12_[+4] chr16:29285031-29285051 0.00014 11_[+4]_1 chr20:62175298-62175318 0.00021 12_[+4] chr1:25272576-25272596 0.00025 12_[+4] chr19:841500-841520 0.00025 10_[+4]_2 chr16:1357647-1357667 0.00032 2_[+4]_10 chr3:53763904-53763924 0.00032 1_[+4]_11 chr16:88281164-88281184 0.00034 12_[+4] chr11:1223250-1223270 0.00041 12_[+4] chr1:18929139-18929159 0.00041 4_[+4]_8 chr11:114480310-11448033 0.00048 2_[+4]_10 chr11:114481468-11448148 0.00048 1_[+4]_11 chr8:26447043-26447063 0.00059 9_[+4]_3 chr19:17593869-17593889 0.00059 2_[+4]_10 chr15:37234824-37234844 0.00069 1_[+4]_11 chr19:3140753-3140773 0.00074 9_[+4]_3 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATGARTG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AATGARTG width=8 seqs=25 chr3:72684884-72684904 ( 1) AATGAATG 1 chr9:136812125-136812145 ( 1) AATGAATG 1 chr6:15837637-15837657 ( 1) AATGAATG 1 chr6:41978829-41978849 ( 2) AATGAATG 1 chr2:172015108-172015128 ( 3) AATGAATG 1 chr4:3608339-3608359 ( 11) AGTGAGTG 1 chr3:191051475-191051495 ( 11) AGTGAATG 1 chr19:4197896-4197916 ( 13) AGTGAATG 1 chr9:139042763-139042783 ( 2) AGTGAATG 1 chr12:14817720-14817740 ( 13) GATGAGTG 1 chr16:29285031-29285051 ( 12) GATGAGTG 1 chr20:62175298-62175318 ( 13) GATGAATG 1 chr1:25272576-25272596 ( 13) AACGAATG 1 chr19:841500-841520 ( 11) AACGAATG 1 chr16:1357647-1357667 ( 3) AGGGAATG 1 chr3:53763904-53763924 ( 2) AGTGAAGG 1 chr16:88281164-88281184 ( 13) ACTGAGTG 1 chr11:1223250-1223270 ( 13) AATGAGCG 1 chr1:18929139-18929159 ( 5) CATGAGTG 1 chr11:114480310-11448033 ( 3) AATAAGTG 1 chr11:114481468-11448148 ( 2) AATAAGTG 1 chr8:26447043-26447063 ( 10) AAGGAGGG 1 chr19:17593869-17593889 ( 3) AAGGAGGG 1 chr15:37234824-37234844 ( 2) AATCAATG 1 chr19:3140753-3140773 ( 10) AATGAATC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATGARTG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 7.5045 E= 2.5e+001 141 -219 -75 -1129 119 -219 25 -1129 -1129 -120 -75 141 -198 -219 213 -1129 167 -1129 -1129 -1129 93 -1129 99 -1129 -1129 -219 -75 148 -1129 -219 225 -1129 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATGARTG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 25 E= 2.5e+001 0.840000 0.040000 0.120000 0.000000 0.720000 0.040000 0.240000 0.000000 0.000000 0.080000 0.120000 0.800000 0.080000 0.040000 0.880000 0.000000 1.000000 0.000000 0.000000 0.000000 0.600000 0.000000 0.400000 0.000000 0.000000 0.040000 0.120000 0.840000 0.000000 0.040000 0.960000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATGARTG MEME-4 regular expression -------------------------------------------------------------------------------- A[AG]TGA[AG]TG -------------------------------------------------------------------------------- Time 9.54 secs. ******************************************************************************** ******************************************************************************** MOTIF CCASCCYC MEME-5 width = 8 sites = 3 llr = 35 E-value = 5.0e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCASCCYC MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::a::::: pos.-specific C aa:7aa7a probability G :::3:::: matrix T ::::::3: bits 2.4 ** ** * 2.2 ** ** * 2.0 ** ** * 1.7 *** ** * Relative 1.5 ****** * Entropy 1.2 ******** (16.7 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CCACCCCC consensus G T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCASCCYC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr10:125154087-12515410 2 2.17e-06 C CCACCCCC AAAAAATGAG chr15:41793541-41793561 5 4.54e-06 TCAT CCAGCCCC AGCTGCTT chr19:49735341-49735361 4 8.09e-06 ccc ccaccctc tgatcatta -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCASCCYC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:125154087-12515410 2.2e-06 1_[+5]_11 chr15:41793541-41793561 4.5e-06 4_[+5]_8 chr19:49735341-49735361 8.1e-06 3_[+5]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCASCCYC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCASCCYC width=8 seqs=3 chr10:125154087-12515410 ( 2) CCACCCCC 1 chr15:41793541-41793561 ( 5) CCAGCCCC 1 chr19:49735341-49735361 ( 4) CCACCCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCASCCYC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 3250 bayes= 10.5277 E= 5.0e+002 -823 244 -823 -823 -823 244 -823 -823 166 -823 -823 -823 -823 186 72 -823 -823 244 -823 -823 -823 244 -823 -823 -823 186 -823 15 -823 244 -823 -823 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCASCCYC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 5.0e+002 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.666667 0.333333 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.666667 0.000000 0.333333 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCASCCYC MEME-5 regular expression -------------------------------------------------------------------------------- CCA[CG]CC[CT]C -------------------------------------------------------------------------------- Time 12.01 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:156414396-156414416 1.40e-01 20 chr1:18929139-18929159 4.35e-04 12_[+1(3.58e-05)] chr9:135865668-135865688 2.40e-04 [+3(1.64e-05)]_4_[+2(4.33e-05)] chr19:841500-841520 8.17e-04 2_[+4(2.28e-05)]_10 chr9:139474192-139474212 4.27e-05 3_[+3(1.64e-05)]_[+3(5.33e-05)]_1 chr19:4232844-4232864 6.43e-05 1_[+1(3.58e-05)]_11 chr9:136599482-136599502 7.66e-05 3_[+3(1.64e-05)]_[+3(4.33e-05)]_1 chr22:50336307-50336327 1.46e-03 7_[+1(5.86e-05)]_5 chr6:20092411-20092431 8.86e-01 20 chr20:48730280-48730300 4.88e-01 20 chr19:3140753-3140773 5.98e-04 1_[+1(3.58e-05)]_11 chr20:62175298-62175318 1.90e-03 3_[+1(5.86e-05)]_9 chr11:114484009-11448402 5.86e-01 20 chr16:22960330-22960350 3.35e-03 11_[+2(7.54e-05)]_1 chr20:61688980-61689000 7.90e-03 20 chrX:1609276-1609296 8.80e-04 10_[+1(3.58e-05)]_2 chr11:114494616-11449463 6.67e-01 20 chr1:15068969-15068989 5.94e-04 8_[+1(3.58e-05)]_4 chr21:37792547-37792567 6.91e-02 20 chr15:75083026-75083046 1.47e-02 20 chr6:11381735-11381755 8.80e-04 7_[+1(3.58e-05)]_5 chrX:1609685-1609705 3.16e-04 [+1(3.58e-05)]_12 chr11:1223250-1223270 8.80e-04 4_[+1(3.58e-05)]_8 chrX:119798125-119798145 3.24e-01 20 chr14:80680042-80680062 2.98e-01 20 chr22:20105538-20105558 9.52e-02 20 chr19:17593869-17593889 8.80e-04 10_[+1(3.58e-05)]_2 chr10:119620532-11962055 3.87e-01 20 chr3:189666388-189666408 9.40e-02 20 chr9:139042763-139042783 6.27e-04 1_[+1(5.86e-05)]_[+1(5.86e-05)]_3 chr16:829076-829096 1.88e-04 1_[+2(4.33e-05)]_2_[+2(4.33e-05)]_1 chr1:16533761-16533781 1.90e-02 20 chr3:53763904-53763924 9.21e-04 9_[+1(3.58e-05)]_3 chr4:1170583-1170603 4.61e-03 20 chr9:139475797-139475817 4.27e-05 [+3(1.64e-05)]_4_[+3(1.64e-05)] chr4:3608339-3608359 6.57e-04 6_[+4(2.28e-05)]_6 chr11:14170404-14170424 9.66e-01 20 chr5:1035339-1035359 3.10e-04 12_[+4(2.28e-05)] chr19:4197896-4197916 8.70e-04 [+1(3.58e-05)]_4_[+1(5.86e-05)] chr4:703245-703265 8.67e-04 8_[+1(3.58e-05)]_4 chr6:149798128-149798148 8.63e-01 20 chr17:75662078-75662098 1.33e-02 20 chr1:200860061-200860081 8.83e-04 1_[+1(3.58e-05)]_11 chr6:159026561-159026581 2.97e-01 20 chr5:172192063-172192083 5.95e-04 20 chr11:114477638-11447765 6.08e-01 20 chr1:26718126-26718146 6.44e-01 20 chr13:59279260-59279280 2.50e-01 20 chr1:23922235-23922255 8.44e-02 20 chrX:1608462-1608482 3.16e-04 1_[+1(3.58e-05)]_11 chr6:150658033-150658053 9.64e-01 20 chr1:25391079-25391099 1.91e-02 20 chr3:194397365-194397385 6.34e-05 [+2(2.69e-05)]_[+3(5.33e-05)]_4 chr1:22598488-22598508 1.58e-04 7_[+2(4.33e-05)]_5 chr15:78610019-78610039 3.68e-01 20 chr8:8374900-8374920 3.24e-02 20 chr10:14004019-14004039 1.45e-01 20 chr1:114401858-114401878 4.56e-01 20 chr20:14862936-14862956 6.02e-04 20 chrX:134618721-134618741 5.61e-01 20 chr22:39858458-39858478 5.47e-01 20 chr16:88281164-88281184 2.39e-03 4_[+4(7.32e-05)]_8 chr2:172015108-172015128 8.80e-04 2_[+1(3.58e-05)]_[+1(3.58e-05)]_2 chr6:31326278-31326298 5.77e-02 20 chr16:87972330-87972350 6.40e-05 6_[+3(5.33e-05)]_6 chr2:9940673-9940693 2.69e-01 20 chr16:85137286-85137306 3.62e-03 6_[+2(7.54e-05)]_6 chr16:29285031-29285051 8.42e-04 3_[+4(2.28e-05)]_9 chr3:52057185-52057205 2.28e-04 7_[+2(2.69e-05)]_5 chr10:26761493-26761513 4.64e-04 5_[+2(2.69e-05)]_7 chr18:60318705-60318725 8.66e-01 20 chr1:25272576-25272596 1.32e-03 4_[+1(5.86e-05)]_8 chr2:232650312-232650332 6.21e-04 7_[+1(3.58e-05)]_5 chr1:25245029-25245049 5.78e-01 20 chr1:175450421-175450441 9.80e-01 20 chr9:37415430-37415450 6.84e-01 20 chr12:4222076-4222096 6.26e-01 20 chr14:69830843-69830863 7.17e-04 5_[+1(3.58e-05)]_7 chr7:65015001-65015021 3.40e-02 20 chr6:6818520-6818540 4.14e-01 20 chr11:114476301-11447632 8.00e-01 20 chr22:39867792-39867812 4.12e-04 [+2(4.33e-05)]_12 chr16:1357647-1357667 8.80e-04 6_[+1(3.58e-05)]_6 chr5:59789402-59789422 8.72e-05 11_[+2(2.69e-05)]_1 chr2:216593511-216593531 6.87e-01 20 chr1:16872478-16872498 2.00e-01 20 chr1:203279360-203279380 2.98e-04 12_[+2(2.69e-05)] chr3:61096401-61096421 4.87e-01 20 chr1:220454579-220454599 2.75e-01 20 chr6:41978829-41978849 8.80e-04 1_[+1(3.58e-05)]_[+1(3.58e-05)]_3 chr11:114481468-11448148 5.02e-02 20 chr6:15837637-15837657 8.80e-04 [+1(3.58e-05)]_[+1(3.58e-05)]_4 chr2:75906871-75906891 1.50e-02 20 chr18:5106911-5106931 7.98e-01 20 chr6:41990083-41990103 8.29e-01 20 chr2:184370819-184370839 2.05e-01 20 chr9:119809129-119809149 7.32e-01 20 chr7:36301228-36301248 5.09e-03 20 chr17:71871612-71871632 4.06e-04 10_[+2(2.69e-05)]_2 chr14:64140222-64140242 6.78e-02 20 chr20:35473798-35473818 5.81e-03 20 chr21:36216944-36216964 3.11e-03 20 chr14:88471177-88471197 1.83e-03 10_[+1(5.86e-05)]_2 chr10:98778541-98778561 2.49e-04 12_[+2(2.69e-05)] chr19:47139283-47139303 6.00e-05 10_[+2(2.69e-05)]_2 chr8:117744896-117744916 4.64e-04 [+2(2.69e-05)]_[+2(2.69e-05)]_4 chr2:48123899-48123919 9.46e-01 20 chr16:81531621-81531641 3.51e-04 10_[+2(2.69e-05)]_2 chr17:38770197-38770217 3.08e-04 8_[+2(2.69e-05)]_4 chr3:53175301-53175321 2.12e-01 20 chr12:110561833-11056185 8.21e-01 20 chr16:29679770-29679790 6.67e-01 20 chr22:23270454-23270474 4.32e-04 10_[+2(2.69e-05)]_2 chr1:148849026-148849046 7.88e-02 20 chr6:16764891-16764911 8.06e-01 20 chr4:185777484-185777504 6.03e-01 20 chr4:75893908-75893928 3.26e-04 12_[+2(2.69e-05)] chr2:222383264-222383284 8.80e-04 5_[+1(3.58e-05)]_7 chr6:122994631-122994651 4.25e-02 20 chr4:156623168-156623188 4.64e-04 [+2(2.69e-05)]_[+2(2.69e-05)]_4 chr5:157024493-157024513 3.56e-01 20 chr2:43709242-43709262 1.79e-01 20 chr11:6490123-6490143 8.73e-01 20 chr2:25632109-25632129 2.47e-04 3_[+2(2.69e-05)]_[+2(4.33e-05)]_1 chr11:95188640-95188660 8.23e-01 20 chrX:790077-790097 2.47e-04 3_[+2(2.69e-05)]_9 chr1:41810453-41810473 2.89e-01 20 chr7:65540431-65540451 2.46e-01 20 chr17:43461475-43461495 8.28e-01 20 chr10:87806839-87806859 2.30e-02 20 chr10:14700497-14700517 9.79e-01 20 chrX:94187419-94187439 9.70e-01 20 chr12:89915460-89915480 1.66e-04 5_[+2(2.69e-05)]_7 chrX:1607847-1607867 4.29e-02 20 chr19:49735341-49735361 2.08e-03 3_[+5(8.09e-06)]_9 chr10:5405063-5405083 7.07e-01 20 chr4:6259588-6259608 9.57e-01 20 chr9:4984333-4984353 2.88e-04 1_[+1(3.58e-05)]_11 chr16:10873972-10873992 8.48e-04 2_[+1(3.58e-05)]_10 chr8:26447043-26447063 2.81e-01 20 chr19:3172103-3172123 8.91e-01 20 chr12:108714549-10871456 2.16e-02 20 chrX:1610199-1610219 1.35e-01 20 chr22:40858389-40858409 9.95e-02 20 chr1:42167000-42167020 3.88e-01 20 chr2:158049673-158049693 2.77e-01 20 chr14:34510608-34510628 6.41e-01 20 chr10:12474600-12474620 4.51e-04 5_[+4(2.28e-05)]_7 chr1:97850085-97850105 1.94e-01 20 chr12:102445535-10244555 7.06e-01 20 chr9:102354227-102354247 1.66e-02 20 chr17:65007814-65007834 5.95e-01 20 chr12:14817720-14817740 3.84e-02 20 chr5:100381561-100381581 1.96e-02 20 chr13:109261850-10926187 5.06e-01 20 chr8:29941223-29941243 8.66e-01 20 chr11:117778624-11777864 4.49e-04 2_[+1(3.58e-05)]_10 chr14:68978575-68978595 9.98e-01 20 chr17:77015729-77015749 4.48e-04 3_[+2(2.69e-05)]_9 chr1:85655056-85655076 7.74e-01 20 chr10:97577954-97577974 1.93e-04 2_[+2(2.69e-05)]_[+2(2.69e-05)]_2 chr7:126338761-126338781 8.66e-04 11_[+1(3.58e-05)]_1 chr16:81498064-81498084 8.52e-01 20 chr13:37013394-37013414 3.40e-02 20 chr1:23501390-23501410 6.28e-01 20 chr19:45226751-45226771 2.28e-01 20 chr15:41793541-41793561 1.08e-02 4_[+5(4.54e-06)]_8 chr7:95051208-95051228 9.71e-01 20 chr10:97961474-97961494 9.10e-01 20 chr3:152478000-152478020 9.31e-01 20 chr10:50399650-50399670 6.70e-01 20 chr5:149172291-149172311 3.08e-04 11_[+2(2.69e-05)]_1 chr16:8614146-8614166 1.48e-03 11_[+1(5.86e-05)]_1 chr3:98319295-98319315 6.30e-01 20 chr7:73914150-73914170 2.47e-05 [+1(3.58e-05)]_12 chr2:78342514-78342534 9.56e-04 [+1(3.58e-05)]_12 chr3:131526809-131526829 7.97e-01 20 chr14:50362309-50362329 8.80e-04 2_[+1(3.58e-05)]_10 chr19:13869380-13869400 6.74e-04 2_[+1(3.58e-05)]_10 chr18:3209953-3209973 8.85e-03 20 chr11:10676012-10676032 6.67e-01 20 chr14:102785391-10278541 8.73e-01 20 chr19:10198548-10198568 7.69e-01 20 chr2:36631644-36631664 7.75e-01 20 chr7:101191014-101191034 3.96e-04 4_[+2(2.69e-05)]_8 chr1:18607657-18607677 1.81e-03 10_[+1(5.86e-05)]_2 chr1:40498124-40498144 2.65e-01 20 chr6:71241104-71241124 9.64e-01 20 chr4:54562421-54562441 3.34e-04 [+2(2.69e-05)]_12 chr2:231530213-231530233 3.14e-03 20 chr3:53194566-53194586 5.16e-01 20 chr17:37810377-37810397 1.61e-01 20 chr15:37234824-37234844 1.52e-03 20 chr14:75885670-75885690 4.60e-02 20 chr10:125154087-12515410 2.67e-04 1_[+5(2.17e-06)]_11 chr5:55389998-55390018 6.51e-01 20 chr1:8744889-8744909 1.44e-04 2_[+3(1.64e-05)]_10 chr6:28910049-28910069 2.02e-01 20 chr17:7961141-7961161 8.61e-01 20 chr13:42994630-42994650 2.54e-01 20 chr4:33188817-33188837 1.55e-01 20 chr5:55352975-55352995 1.12e-01 20 chr2:132792362-132792382 7.44e-02 20 chr3:191051475-191051495 4.20e-04 2_[+1(3.58e-05)]_[+1(5.86e-05)]_2 chr3:14967352-14967372 2.34e-01 20 chr14:105066892-10506691 3.43e-01 20 chr2:166748065-166748085 9.97e-02 20 chr2:56426250-56426270 5.52e-01 20 chr6:88457564-88457584 9.93e-01 20 chr3:171475614-171475634 8.18e-01 20 chr1:111774940-111774960 6.40e-03 20 chr11:120483261-12048328 7.45e-02 20 chr12:92950546-92950566 7.53e-01 20 chr7:114398900-114398920 9.24e-01 20 chr21:45138802-45138822 5.76e-02 20 chr1:229574722-229574742 8.09e-04 [+1(3.58e-05)]_12 chr7:81904196-81904216 6.32e-02 20 chr2:54769292-54769312 3.49e-01 20 chr13:32458882-32458902 3.70e-04 1_[+2(2.69e-05)]_[+2(2.69e-05)]_3 chr9:119835968-119835988 8.53e-01 20 chr1:193000787-193000807 2.47e-04 4_[+2(2.69e-05)]_[+2(2.69e-05)] chr6:134432420-134432440 7.83e-01 20 chr20:4979219-4979239 8.87e-01 20 chr6:37911588-37911608 8.65e-02 20 chr21:34601911-34601931 6.64e-04 20 chr22:37308922-37308942 2.19e-04 [+3(1.64e-05)]_4_[+2(2.69e-05)] chr17:46933943-46933963 6.54e-01 20 chr9:136812125-136812145 8.80e-04 [+1(3.58e-05)]_4_[+1(3.58e-05)] chr6:41753867-41753887 5.30e-01 20 chr12:53933529-53933549 9.67e-01 20 chr10:12065086-12065106 5.95e-02 20 chr2:43174178-43174198 1.31e-02 20 chr7:72142104-72142124 5.57e-01 20 chr4:22478952-22478972 7.96e-01 20 chr1:82711492-82711512 7.78e-01 20 chr1:246058948-246058968 1.65e-01 20 chr4:103427054-103427074 5.02e-01 20 chr18:23807649-23807669 1.38e-01 20 chr20:11465338-11465358 6.27e-02 20 chr11:114486410-11448643 4.55e-01 20 chr7:67714746-67714766 4.30e-04 11_[+4(2.28e-05)]_1 chr10:3102957-3102977 2.84e-04 1_[+3(5.33e-05)]_11 chr14:94858884-94858904 3.63e-04 6_[+1(3.58e-05)]_6 chr11:114480310-11448033 2.22e-02 20 chr2:24799707-24799727 2.34e-02 20 chr3:72866288-72866308 5.72e-01 20 chr3:72684884-72684904 8.80e-04 [+1(3.58e-05)]_[+1(3.58e-05)]_4 chr1:67805425-67805445 4.21e-01 20 chr4:27704862-27704882 3.18e-01 20 chr6:21215154-21215174 3.49e-01 20 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n09.farnam.hpc.yale.internal ********************************************************************************